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The map label for this gene is ybgF [H]

Identifier: 119775219

GI number: 119775219

Start: 2528286

End: 2529050

Strand: Reverse

Name: ybgF [H]

Synonym: Sama_2084

Alternate gene names: 119775219

Gene position: 2529050-2528286 (Counterclockwise)

Preceding gene: 119775220

Following gene: 119775218

Centisome position: 58.73

GC content: 52.94

Gene sequence:

>765_bases
ATGAAAAAGACTGTATTACTGGTAGCCATGTTGGCGGCGGGGCAAGCCTTTGCCGCCGCGCCGGTTGAAGATTTGGGTGG
TGGCGGTAGCCTCGATGAGCGTATCGCCAAGCTTGAGCGAATTCTGAAAGCCAAACAGCAAACCGACTTTGACATGCAGC
GTCGTTTGGACGCCCTGCAGCAGGAAGTGTTGGATTTGCGTGGGCTCACGGAGCAGCAGAACTATCAAATCAACCAGATG
CTTGAGCGTCAGCGCAAACTGTATGAAGAGATAGCCAGCTTAAGCTCAGGTGCTGCCAAGGTGCAGCCCCAGGCGCAGGC
ACCTGTCAGTGCTGCTGGCGGCGCAAGCAAGCCAGTCATTAGTGACGGCACTGTGGCGGTGGAAGCTTCACTCAATGAGA
CCGCTTCTTACGAGCAGGCCATTAACCTGGTCCTCAAAGAGCGCAAGTACGATGAGGCTATCGCGGCATTTCGCAGTTTT
GTCAAAAAATACCCTGGCTCAAACTACACTGATAATGCCAACTATTGGCTGGGTCAGCTTCTCTATAATAAGAACGAGCT
CGACGAGGCCCGTGGTGCCTTTACTGTGGTGGTGGAAAAATATCCCGATTCCAGTAAGCGTGGTGACAGCTTGGTCAAGC
TGGGTCTGATTGCCGAGAAGAAAGGCGATACCGTTGGCGCAAAAAACCTGTACCGCAAGGTAATAAAAGAGTACGCAAAC
AGTGCTGCTGCGCGCATTGCACAGCAGCAATTGAACGCGCTTTGA

Upstream 100 bases:

>100_bases
GAAGAAAAGCCACAGGATCTGACCCGTACCGATGAAGGTTTCTCCAAGAACCGTCGCGCAGTATTGGTGTACTGAGGGTT
AACACGACAGGGTAGGATTG

Downstream 100 bases:

>100_bases
CGGGTTTTAATCCAGAAAACAGTCTCTTGGGCTGTTTTTCATGCAAACGGCAAAAGTTTCGGGAATTTGCGCTTGCATGG
ATAACTGAAAAAGGTATTAT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 254

Protein sequence:

>254_residues
MKKTVLLVAMLAAGQAFAAAPVEDLGGGGSLDERIAKLERILKAKQQTDFDMQRRLDALQQEVLDLRGLTEQQNYQINQM
LERQRKLYEEIASLSSGAAKVQPQAQAPVSAAGGASKPVISDGTVAVEASLNETASYEQAINLVLKERKYDEAIAAFRSF
VKKYPGSNYTDNANYWLGQLLYNKNELDEARGAFTVVVEKYPDSSKRGDSLVKLGLIAEKKGDTVGAKNLYRKVIKEYAN
SAAARIAQQQLNAL

Sequences:

>Translated_254_residues
MKKTVLLVAMLAAGQAFAAAPVEDLGGGGSLDERIAKLERILKAKQQTDFDMQRRLDALQQEVLDLRGLTEQQNYQINQM
LERQRKLYEEIASLSSGAAKVQPQAQAPVSAAGGASKPVISDGTVAVEASLNETASYEQAINLVLKERKYDEAIAAFRSF
VKKYPGSNYTDNANYWLGQLLYNKNELDEARGAFTVVVEKYPDSSKRGDSLVKLGLIAEKKGDTVGAKNLYRKVIKEYAN
SAAARIAQQQLNAL
>Mature_254_residues
MKKTVLLVAMLAAGQAFAAAPVEDLGGGGSLDERIAKLERILKAKQQTDFDMQRRLDALQQEVLDLRGLTEQQNYQINQM
LERQRKLYEEIASLSSGAAKVQPQAQAPVSAAGGASKPVISDGTVAVEASLNETASYEQAINLVLKERKYDEAIAAFRSF
VKKYPGSNYTDNANYWLGQLLYNKNELDEARGAFTVVVEKYPDSSKRGDSLVKLGLIAEKKGDTVGAKNLYRKVIKEYAN
SAAARIAQQQLNAL

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786963, Length=252, Percent_Identity=40.8730158730159, Blast_Score=168, Evalue=4e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27818; Mature: 27818

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKTVLLVAMLAAGQAFAAAPVEDLGGGGSLDERIAKLERILKAKQQTDFDMQRRLDALQ
CCHHHHHHHHHHCCCHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
QEVLDLRGLTEQQNYQINQMLERQRKLYEEIASLSSGAAKVQPQAQAPVSAAGGASKPVI
HHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
SDGTVAVEASLNETASYEQAINLVLKERKYDEAIAAFRSFVKKYPGSNYTDNANYWLGQL
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LYNKNELDEARGAFTVVVEKYPDSSKRGDSLVKLGLIAEKKGDTVGAKNLYRKVIKEYAN
HHCCHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
SAAARIAQQQLNAL
HHHHHHHHHHHHCC
>Mature Secondary Structure
MKKTVLLVAMLAAGQAFAAAPVEDLGGGGSLDERIAKLERILKAKQQTDFDMQRRLDALQ
CCHHHHHHHHHHCCCHHHCCCHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
QEVLDLRGLTEQQNYQINQMLERQRKLYEEIASLSSGAAKVQPQAQAPVSAAGGASKPVI
HHHHHHHCCCCHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
SDGTVAVEASLNETASYEQAINLVLKERKYDEAIAAFRSFVKKYPGSNYTDNANYWLGQL
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHH
LYNKNELDEARGAFTVVVEKYPDSSKRGDSLVKLGLIAEKKGDTVGAKNLYRKVIKEYAN
HHCCHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH
SAAARIAQQQLNAL
HHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1574003; 8905232; 9278503; 7567469 [H]