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The map label for this gene is pal [H]

Identifier: 119775220

GI number: 119775220

Start: 2529076

End: 2529612

Strand: Reverse

Name: pal [H]

Synonym: Sama_2085

Alternate gene names: 119775220

Gene position: 2529612-2529076 (Counterclockwise)

Preceding gene: 119775221

Following gene: 119775219

Centisome position: 58.74

GC content: 55.31

Gene sequence:

>537_bases
ATGGAATTGAACAAACTGCTTAAGACCATGCTGATTGTGGCTCCTATCATGGCTTTGTCTGCCTGTAGCTCAACCGACTC
AGCCACTGATGCCAGCGGCTCATCCAGCAGTCTGGGTGGCAGCGGCTCAAGCATGGGCGGCGTTGAAACCGGCAGCGTAT
CCGGCATGCTGACTCCCGAAGAGCAGATGCGCATGAAGCAGGAAGAACTGCGCCGCGAGAACGTGATTTACTTCGACTTC
GACCGCAGTGAAGTGTCGCCGTTGTCAGCCGATATTCTGCTGGCCCACGGTAACTATCTGCTTGAAAACCCCTCAGTGCG
TATCCTCATTGAAGGTCACTCTGACGAACGCGGTACCCCTGAGTACAACATTGCCCTGGGTGAGCGCCGTGCCAAGGCCG
TTGCCAAGTATCTGCAGGCCATGGGTGTACAACCTGCCCAGATGAGCATTGTCAGCTACGGCGAAGAAAAGCCACAGGAT
CTGACCCGTACCGATGAAGGTTTCTCCAAGAACCGTCGCGCAGTATTGGTGTACTGA

Upstream 100 bases:

>100_bases
TAAGGCAAGATTGCCCGCGGGGCAGGGGGAGGTGAAATCACCTTCCTGGTCACCGTTCCTGTAACGAATTATCATCATCG
ATTGATTAAAGGATTTAAAA

Downstream 100 bases:

>100_bases
GGGTTAACACGACAGGGTAGGATTGATGAAAAAGACTGTATTACTGGTAGCCATGTTGGCGGCGGGGCAAGCCTTTGCCG
CCGCGCCGGTTGAAGATTTG

Product: peptidoglycan-associated lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 178; Mature: 178

Protein sequence:

>178_residues
MELNKLLKTMLIVAPIMALSACSSTDSATDASGSSSSLGGSGSSMGGVETGSVSGMLTPEEQMRMKQEELRRENVIYFDF
DRSEVSPLSADILLAHGNYLLENPSVRILIEGHSDERGTPEYNIALGERRAKAVAKYLQAMGVQPAQMSIVSYGEEKPQD
LTRTDEGFSKNRRAVLVY

Sequences:

>Translated_178_residues
MELNKLLKTMLIVAPIMALSACSSTDSATDASGSSSSLGGSGSSMGGVETGSVSGMLTPEEQMRMKQEELRRENVIYFDF
DRSEVSPLSADILLAHGNYLLENPSVRILIEGHSDERGTPEYNIALGERRAKAVAKYLQAMGVQPAQMSIVSYGEEKPQD
LTRTDEGFSKNRRAVLVY
>Mature_178_residues
MELNKLLKTMLIVAPIMALSACSSTDSATDASGSSSSLGGSGSSMGGVETGSVSGMLTPEEQMRMKQEELRRENVIYFDF
DRSEVSPLSADILLAHGNYLLENPSVRILIEGHSDERGTPEYNIALGERRAKAVAKYLQAMGVQPAQMSIVSYGEEKPQD
LTRTDEGFSKNRRAVLVY

Specific function: Thought to play a role in bacterial envelope integrity. Very strongly associated with the peptidoglycan [H]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=178, Percent_Identity=49.438202247191, Blast_Score=169, Evalue=9e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 19340; Mature: 19340

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNKLLKTMLIVAPIMALSACSSTDSATDASGSSSSLGGSGSSMGGVETGSVSGMLTPE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCH
EQMRMKQEELRRENVIYFDFDRSEVSPLSADILLAHGNYLLENPSVRILIEGHSDERGTP
HHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCEEEECCCEEEEEECCCCCCCCC
EYNIALGERRAKAVAKYLQAMGVQPAQMSIVSYGEEKPQDLTRTDEGFSKNRRAVLVY
CEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHCCCCCCCCCCCEEEEC
>Mature Secondary Structure
MELNKLLKTMLIVAPIMALSACSSTDSATDASGSSSSLGGSGSSMGGVETGSVSGMLTPE
CCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCH
EQMRMKQEELRRENVIYFDFDRSEVSPLSADILLAHGNYLLENPSVRILIEGHSDERGTP
HHHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEECCCEEEECCCEEEEEECCCCCCCCC
EYNIALGERRAKAVAKYLQAMGVQPAQMSIVSYGEEKPQDLTRTDEGFSKNRRAVLVY
CEEEEECHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCHHHCCCCCCCCCCCEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]