| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775205
Identifier: 119775205
GI number: 119775205
Start: 2505349
End: 2505834
Strand: Reverse
Name: 119775205
Synonym: Sama_2070
Alternate gene names: NA
Gene position: 2505834-2505349 (Counterclockwise)
Preceding gene: 119775206
Following gene: 119775204
Centisome position: 58.19
GC content: 53.91
Gene sequence:
>486_bases ATGACGCAGATACCAGATCCTAACACTCAGTCGGCCAACGCCATGAGTCAGGAAGGGCCCCCCGAGGCCGCCGCCTTTGC GGCCATGGAGAATATGCTGAAGCCAGCCTTTTGCAGCGAACAACCGCTTTTTGCTATAGATGAAGCTGGGCGATGGCACT ATCAGGGACAGCCCCTGCCCGATAAATTTGCCCGGCTCTTTATGGGTATCCTCAGGCCCGATAGCGGCGGCTGGGCCCTG GTAACACCGGCAGAGAGGGTCAAAGTGACGGTAGCCAGAACGCCTGTGGTGATAGTGGATTTTGAAACAGCGGCAGACCA GTTGATCCTTACCTGTGTGTTGGGAAGCCAGTACCGAGTCGACAAAGCAGATATCTCATTGATGGAAGAGGGTGTTTTGA TTTCACTTCCCAATTTGAAAACCGGCAGCATGAGCCGTGCCTGCTTCTATCGCTATGCGGAATTACTCCTGTGTGACAAA GACTGA
Upstream 100 bases:
>100_bases AAGGCCCTTTCACAGAGTGATGGGGCCTTTTACTTCCGATTTATGCCATCCCGGTTTAGCCTGAGTAACAAGATTAGTGA TGCAAAGGAAGACACACATC
Downstream 100 bases:
>100_bases ATTTGCGCAGGGCCGCTAGTGTATTGCGCTTTCGGTGATAGTATTAAGAAGGTGGCTGTGAATTCTGGCCAGCAGCTTGA ACGACGGGAGGTGCTGTTTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 161; Mature: 160
Protein sequence:
>161_residues MTQIPDPNTQSANAMSQEGPPEAAAFAAMENMLKPAFCSEQPLFAIDEAGRWHYQGQPLPDKFARLFMGILRPDSGGWAL VTPAERVKVTVARTPVVIVDFETAADQLILTCVLGSQYRVDKADISLMEEGVLISLPNLKTGSMSRACFYRYAELLLCDK D
Sequences:
>Translated_161_residues MTQIPDPNTQSANAMSQEGPPEAAAFAAMENMLKPAFCSEQPLFAIDEAGRWHYQGQPLPDKFARLFMGILRPDSGGWAL VTPAERVKVTVARTPVVIVDFETAADQLILTCVLGSQYRVDKADISLMEEGVLISLPNLKTGSMSRACFYRYAELLLCDK D >Mature_160_residues TQIPDPNTQSANAMSQEGPPEAAAFAAMENMLKPAFCSEQPLFAIDEAGRWHYQGQPLPDKFARLFMGILRPDSGGWALV TPAERVKVTVARTPVVIVDFETAADQLILTCVLGSQYRVDKADISLMEEGVLISLPNLKTGSMSRACFYRYAELLLCDKD
Specific function: Unknown
COG id: COG3816
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17700; Mature: 17568
Theoretical pI: Translated: 4.50; Mature: 4.50
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.8 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.8 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTQIPDPNTQSANAMSQEGPPEAAAFAAMENMLKPAFCSEQPLFAIDEAGRWHYQGQPLP CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEECCCCCH DKFARLFMGILRPDSGGWALVTPAERVKVTVARTPVVIVDFETAADQLILTCVLGSQYRV HHHHHHHHHHHCCCCCCEEEECCHHHEEEEEECCCEEEEECCCCHHHEEEEEECCCCEEE DKADISLMEEGVLISLPNLKTGSMSRACFYRYAELLLCDKD CHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHEEECCC >Mature Secondary Structure TQIPDPNTQSANAMSQEGPPEAAAFAAMENMLKPAFCSEQPLFAIDEAGRWHYQGQPLP CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCEEECCCCCH DKFARLFMGILRPDSGGWALVTPAERVKVTVARTPVVIVDFETAADQLILTCVLGSQYRV HHHHHHHHHHHCCCCCCEEEECCHHHEEEEEECCCEEEEECCCCHHHEEEEEECCCCEEE DKADISLMEEGVLISLPNLKTGSMSRACFYRYAELLLCDKD CHHHHHHHCCCEEEECCCCCCCCCHHHHHHHHHHHEEECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA