| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is icd [H]
Identifier: 119775194
GI number: 119775194
Start: 2493959
End: 2496184
Strand: Reverse
Name: icd [H]
Synonym: Sama_2059
Alternate gene names: 119775194
Gene position: 2496184-2493959 (Counterclockwise)
Preceding gene: 119775201
Following gene: 119775192
Centisome position: 57.97
GC content: 55.17
Gene sequence:
>2226_bases ATGAAAGATAATTCCCCAACGATTATTTACACTGAAACCGATGAGGCGCCAGCACTCGCTACCCTGTCCCTGCTGCCTAT CCTTCAGACATTTGCCGAGCCAGCCGGCGTGAAGATCGAAACCCGCGACATCTCTCTGTCCGGTCGCGTTATTGCTACTT TTCCTGAGAAGCTGACCGATGCCCAGCGCATTGGCGATCACCTGGCTGAACTGGGCGAACTGGCCACCAAGCCAGAAGCC AACATCATCAAGCTGCCAAACATCTCTGCTTCTATCCCACAGCTCAAAGCCTGTATTAAAGAGCTGCAGGCTCAGGGTTA TGACATCCCTAACTATCCTGAAGAGCCAAAGACTGATGAAGAGAAGTCTATCAAGGCCCGTTACGACAAGATTAAAGGCA GTGCAGTAAACCCTGTACTGCGTGAAGGTAACTCCGACCGCCGTGCGCCGCTGTCAGTGAAAAACTATGCCCGCAAGAAC CCACACTCCATGGGCAAGTGGGCAAGCGACTCCAAGTCTCACGTATCTCATATGGAAGCCGGTGATTTTTACGGCTCTGA GCAGTCTGTGACATTGGCCGATGCCGATAGCGTCAGCATAGTGCACACCAGCAAAGCCGGTGTGGAAACCGTTCTGAAAT CAGGTCTTAAGCTGCAAGCCGGTGAAATCATCGACTCAGCTGTGATGAGCAAAAATGCCCTGGTTGCCTTCTTTGAGCGC GAAATCGAAGCCGCCAAGGCAGAAGATGTGCTGCTGTCGCTGCACCTGAAAGCCACCATGATGAAGGTGTCTGACCCCAT CATGTTTGGTCACGCTGTTAAAGTGTTTTTCAAGCCACTGTTCGCCAAGCATGCCGAAACCTTCGAACGTCTGGGTGTGG ATGTAAACAACGGTTTTGGTGACGTGGTTGCCAAAATCCAGTCTCTGCCGGAAGCCGAGCGCGCCGCCATCGAAGCCGAT ATCCAGGCCGTGTACGCCGAGCGTCCTGCCATGGCCATGGTGAACTCTGACAAGGGCATCACCAACCTGCACGTACCAAG TGACATCATCATCGATGCCTCCATGCCTGCGGCTATCCGCTCTTCAGGCCAGATGTGGGGCCCGGACGGCCAGCTTAAAG ACACCAAGTTTATGATCCCGGATCGCTGCTATGCCGGTGTGTACGATGCCACCATCAACTTCTGTAAAGCGCACGGCGCC TTCGATCCCCGCACCATGGGTACCATCCCTAACGTGGGCCTGATGGCGCAGAAAGCCGAAGAGTACGGCAGCCACGACAA AACCTTTGAAATCGCCGAAGACGGCGTGGTGACTGTGGTTAACGCGGCGGGTTCTGTGCTGATGAGCCACACTGTTGAAG CCGGTGACATCTTCCGTATGTGTCAGGTGAAAGACGCGCCAATCCAGGATTGGGTGAAGCTCGCCGTTCGTCGCGCCCGC TTGTCTGAGACTCCAGCGGTGTTCTGGCTTGATAAAAACCGTGCCCACGATGCTGAGCTGATCAAGAAGGTGGAAGCCTA CCTGCCACAGCACGACACCTCAGGTCTGGAAATTCACATCATGTCTCCGGTTGAAGCAACCCAGTTCTCGCTGGCGCGCA TGAAAGATGGCAAAGACACCATCTCAGTTACCGGTAACGTACTGCGTGACTACCTGACTGACCTGTTCCCCATCCTTGAA CTCGGTACCAGCGCCAAGATGCTGTCGATCGTGCCTTTGATGAATGGCGGCGGTCTGTTTGAAACCGGTGCCGGTGGCAG CGCGCCCAAGCACGTTGAGCAGGTTCAGAGCGAAAACTACCTGCGTTGGGATTCACTGGGTGAGTTCCTGGCACTGGCTG CATCTTTCGAACACCTGGCCCAAACCGCCGGTGTTGCCAAGGCGCAGGTGCTGGCCGATACCCTGGATACTGCTATCGGT AAGTTCCTGGACGAAAACAAGTCACCAGCCCGTCGTGTAGGTCAAATCGACAACCGTGGCAGCCACTTCTACCTGGCCAT GTACTGGGCTCAGGCACTGGCCGCGCAAACTGCCGATGCCGAGCTTGCTGCTCACTTCGGTCAGTTGGCTGATAAGCTTG CTGCCAACGAAGAAACCATTTTGGCGGAGCTGATTGGTGTACAGGGCCACAGCGTGGATCTCGGCGGTTACTATCGTCCT GATTTTGCCAAGGCAAGTGCAGTAATGCGCCCAAGCGCGACCCTGAACGGCCTGATGAGCCACTGA
Upstream 100 bases:
>100_bases ACCGGTTACCGTGCGGTGAAGTCAGGTGCGTATACTGCTCATCGTGAATATCGAATAAAAACTATAAATCTTTAAATTAT ACAATCACGTAGGAAGCAAA
Downstream 100 bases:
>100_bases GCATAGTCAGTCGTTGAAAAAGGAGAGCTCAGGCTCTCCTTTTTTAATGGGTGTTAAAAATAAATGGCAGGGAAAAGAAC TAAAAATAAAAAGGCAGGAA
Product: isocitrate dehydrogenase (NADP(+))
Products: NA
Alternate protein names: IDH; Oxalosuccinate decarboxylase [H]
Number of amino acids: Translated: 741; Mature: 741
Protein sequence:
>741_residues MKDNSPTIIYTETDEAPALATLSLLPILQTFAEPAGVKIETRDISLSGRVIATFPEKLTDAQRIGDHLAELGELATKPEA NIIKLPNISASIPQLKACIKELQAQGYDIPNYPEEPKTDEEKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKN PHSMGKWASDSKSHVSHMEAGDFYGSEQSVTLADADSVSIVHTSKAGVETVLKSGLKLQAGEIIDSAVMSKNALVAFFER EIEAAKAEDVLLSLHLKATMMKVSDPIMFGHAVKVFFKPLFAKHAETFERLGVDVNNGFGDVVAKIQSLPEAERAAIEAD IQAVYAERPAMAMVNSDKGITNLHVPSDIIIDASMPAAIRSSGQMWGPDGQLKDTKFMIPDRCYAGVYDATINFCKAHGA FDPRTMGTIPNVGLMAQKAEEYGSHDKTFEIAEDGVVTVVNAAGSVLMSHTVEAGDIFRMCQVKDAPIQDWVKLAVRRAR LSETPAVFWLDKNRAHDAELIKKVEAYLPQHDTSGLEIHIMSPVEATQFSLARMKDGKDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVEQVQSENYLRWDSLGEFLALAASFEHLAQTAGVAKAQVLADTLDTAIG KFLDENKSPARRVGQIDNRGSHFYLAMYWAQALAAQTADAELAAHFGQLADKLAANEETILAELIGVQGHSVDLGGYYRP DFAKASAVMRPSATLNGLMSH
Sequences:
>Translated_741_residues MKDNSPTIIYTETDEAPALATLSLLPILQTFAEPAGVKIETRDISLSGRVIATFPEKLTDAQRIGDHLAELGELATKPEA NIIKLPNISASIPQLKACIKELQAQGYDIPNYPEEPKTDEEKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKN PHSMGKWASDSKSHVSHMEAGDFYGSEQSVTLADADSVSIVHTSKAGVETVLKSGLKLQAGEIIDSAVMSKNALVAFFER EIEAAKAEDVLLSLHLKATMMKVSDPIMFGHAVKVFFKPLFAKHAETFERLGVDVNNGFGDVVAKIQSLPEAERAAIEAD IQAVYAERPAMAMVNSDKGITNLHVPSDIIIDASMPAAIRSSGQMWGPDGQLKDTKFMIPDRCYAGVYDATINFCKAHGA FDPRTMGTIPNVGLMAQKAEEYGSHDKTFEIAEDGVVTVVNAAGSVLMSHTVEAGDIFRMCQVKDAPIQDWVKLAVRRAR LSETPAVFWLDKNRAHDAELIKKVEAYLPQHDTSGLEIHIMSPVEATQFSLARMKDGKDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVEQVQSENYLRWDSLGEFLALAASFEHLAQTAGVAKAQVLADTLDTAIG KFLDENKSPARRVGQIDNRGSHFYLAMYWAQALAAQTADAELAAHFGQLADKLAANEETILAELIGVQGHSVDLGGYYRP DFAKASAVMRPSATLNGLMSH >Mature_741_residues MKDNSPTIIYTETDEAPALATLSLLPILQTFAEPAGVKIETRDISLSGRVIATFPEKLTDAQRIGDHLAELGELATKPEA NIIKLPNISASIPQLKACIKELQAQGYDIPNYPEEPKTDEEKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKN PHSMGKWASDSKSHVSHMEAGDFYGSEQSVTLADADSVSIVHTSKAGVETVLKSGLKLQAGEIIDSAVMSKNALVAFFER EIEAAKAEDVLLSLHLKATMMKVSDPIMFGHAVKVFFKPLFAKHAETFERLGVDVNNGFGDVVAKIQSLPEAERAAIEAD IQAVYAERPAMAMVNSDKGITNLHVPSDIIIDASMPAAIRSSGQMWGPDGQLKDTKFMIPDRCYAGVYDATINFCKAHGA FDPRTMGTIPNVGLMAQKAEEYGSHDKTFEIAEDGVVTVVNAAGSVLMSHTVEAGDIFRMCQVKDAPIQDWVKLAVRRAR LSETPAVFWLDKNRAHDAELIKKVEAYLPQHDTSGLEIHIMSPVEATQFSLARMKDGKDTISVTGNVLRDYLTDLFPILE LGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVEQVQSENYLRWDSLGEFLALAASFEHLAQTAGVAKAQVLADTLDTAIG KFLDENKSPARRVGQIDNRGSHFYLAMYWAQALAAQTADAELAAHFGQLADKLAANEETILAELIGVQGHSVDLGGYYRP DFAKASAVMRPSATLNGLMSH
Specific function: Unknown
COG id: COG2838
COG function: function code C; Monomeric isocitrate dehydrogenase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the monomeric-type IDH family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001804 - InterPro: IPR004436 [H]
Pfam domain/function: PF03971 IDH [H]
EC number: =1.1.1.42 [H]
Molecular weight: Translated: 80333; Mature: 80333
Theoretical pI: Translated: 5.51; Mature: 5.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKDNSPTIIYTETDEAPALATLSLLPILQTFAEPAGVKIETRDISLSGRVIATFPEKLTD CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEECCHHHHH AQRIGDHLAELGELATKPEANIIKLPNISASIPQLKACIKELQAQGYDIPNYPEEPKTDE HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH EKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKNPHSMGKWASDSKSHVSHMEA HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHC GDFYGSEQSVTLADADSVSIVHTSKAGVETVLKSGLKLQAGEIIDSAVMSKNALVAFFER CCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHCCCCEEHHHHHHHHHHCCCHHHHHHHH EIEAAKAEDVLLSLHLKATMMKVSDPIMFGHAVKVFFKPLFAKHAETFERLGVDVNNGFG HHHHHHHHHHHEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DVVAKIQSLPEAERAAIEADIQAVYAERPAMAMVNSDKGITNLHVPSDIIIDASMPAAIR HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHHH SSGQMWGPDGQLKDTKFMIPDRCYAGVYDATINFCKAHGAFDPRTMGTIPNVGLMAQKAE CCCCCCCCCCCCCCCEEECCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH EYGSHDKTFEIAEDGVVTVVNAAGSVLMSHTVEAGDIFRMCQVKDAPIQDWVKLAVRRAR HHCCCCCEEEECCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH LSETPAVFWLDKNRAHDAELIKKVEAYLPQHDTSGLEIHIMSPVEATQFSLARMKDGKDT HCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCE ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVEQVQSENY EEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHCCC LRWDSLGEFLALAASFEHLAQTAGVAKAQVLADTLDTAIGKFLDENKSPARRVGQIDNRG CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC SHFYLAMYWAQALAAQTADAELAAHFGQLADKLAANEETILAELIGVQGHSVDLGGYYRP CEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCCC DFAKASAVMRPSATLNGLMSH CHHHHHHHCCCCHHHHHHHCC >Mature Secondary Structure MKDNSPTIIYTETDEAPALATLSLLPILQTFAEPAGVKIETRDISLSGRVIATFPEKLTD CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEEECCCEEEECCHHHHH AQRIGDHLAELGELATKPEANIIKLPNISASIPQLKACIKELQAQGYDIPNYPEEPKTDE HHHHHHHHHHHHHHHCCCCCCEEECCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCH EKSIKARYDKIKGSAVNPVLREGNSDRRAPLSVKNYARKNPHSMGKWASDSKSHVSHMEA HHHHHHHHHHHCCCCCCHHHHCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCHHHHHHHHC GDFYGSEQSVTLADADSVSIVHTSKAGVETVLKSGLKLQAGEIIDSAVMSKNALVAFFER CCCCCCCCEEEEECCCCEEEEECCHHHHHHHHHCCCCEEHHHHHHHHHHCCCHHHHHHHH EIEAAKAEDVLLSLHLKATMMKVSDPIMFGHAVKVFFKPLFAKHAETFERLGVDVNNGFG HHHHHHHHHHHEEHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHH DVVAKIQSLPEAERAAIEADIQAVYAERPAMAMVNSDKGITNLHVPSDIIIDASMPAAIR HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCEEEECCCCEEEECCCCHHHH SSGQMWGPDGQLKDTKFMIPDRCYAGVYDATINFCKAHGAFDPRTMGTIPNVGLMAQKAE CCCCCCCCCCCCCCCEEECCCHHHCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHH EYGSHDKTFEIAEDGVVTVVNAAGSVLMSHTVEAGDIFRMCQVKDAPIQDWVKLAVRRAR HHCCCCCEEEECCCCEEEEEHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHH LSETPAVFWLDKNRAHDAELIKKVEAYLPQHDTSGLEIHIMSPVEATQFSLARMKDGKDT HCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCE ISVTGNVLRDYLTDLFPILELGTSAKMLSIVPLMNGGGLFETGAGGSAPKHVEQVQSENY EEHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCEEECCCCCCCHHHHHHHHHCCC LRWDSLGEFLALAASFEHLAQTAGVAKAQVLADTLDTAIGKFLDENKSPARRVGQIDNRG CCHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC SHFYLAMYWAQALAAQTADAELAAHFGQLADKLAANEETILAELIGVQGHSVDLGGYYRP CEEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCEEECCCCCCC DFAKASAVMRPSATLNGLMSH CHHHHHHHCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 12005040; 4149369; 12467571 [H]