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The map label for this gene is ycfJ [C]

Identifier: 119775187

GI number: 119775187

Start: 2488462

End: 2488929

Strand: Reverse

Name: ycfJ [C]

Synonym: Sama_2052

Alternate gene names: 119775187

Gene position: 2488929-2488462 (Counterclockwise)

Preceding gene: 119775191

Following gene: 119775185

Centisome position: 57.8

GC content: 55.34

Gene sequence:

>468_bases
ATGTGGAAACCTGCACTCTATTGTCTGGTGCTTTTGACAGCATGTTTCTCAGGCTCGGTCTGTGCCGGTTACGAGAGAAA
TCAGGCGATGCCGGTGGAAAAAGTACTTTATGGTGAGGTTATCTCAGTGCGTCGACTGACCCAGCAGGAATTGGTGGCTG
ACAAGCATCGTGGCTGGCGAACCTTTGGGGGCGCTTTGCTCGGCGGCGTGATTGGCCATCAGTTTGGGGGCGGCTCAGGA
CAGGATGTGGCGACAGTCCTCGGGGCCCTGCTTGGCGGGGTGATTGCCAATCAGGCCGGAGGCGACAGTTATCGTGAGCT
TCGTCTGATTGAGCTGATGATCCGTCAGGAAGACGACACGCAAATCATGATTTTGCAGGACGAAGACTCAGGCATGCCCT
TCAAGGCTGGTGATGAGGTGCGCGTGGTATACCTTCAGGGCATGGTCAGAGTCGATAAAGCCATGTGA

Upstream 100 bases:

>100_bases
GAGAAGGAAATCTTATCTGTTCATCATCGATAAAAGACAGGCCGTTCACAAAGGCGTACTATCAAAGGGTTCATCCTAAT
AAAGTAGCGGAAATTGGATT

Downstream 100 bases:

>100_bases
TGGTTGGCTAATTCCGTTAAAATAATTAAAGCCCGGCATTGCCGGGCTCTTTGCTGCGTCCTTGGCCACAGGAGGGGCTT
GTAAACGAGCGTCTATTTTA

Product: hypothetical protein

Products: NA

Alternate protein names: Outer Membrane Protein; Outer Membrane Lipoprotein; Surface Antigen

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MWKPALYCLVLLTACFSGSVCAGYERNQAMPVEKVLYGEVISVRRLTQQELVADKHRGWRTFGGALLGGVIGHQFGGGSG
QDVATVLGALLGGVIANQAGGDSYRELRLIELMIRQEDDTQIMILQDEDSGMPFKAGDEVRVVYLQGMVRVDKAM

Sequences:

>Translated_155_residues
MWKPALYCLVLLTACFSGSVCAGYERNQAMPVEKVLYGEVISVRRLTQQELVADKHRGWRTFGGALLGGVIGHQFGGGSG
QDVATVLGALLGGVIANQAGGDSYRELRLIELMIRQEDDTQIMILQDEDSGMPFKAGDEVRVVYLQGMVRVDKAM
>Mature_155_residues
MWKPALYCLVLLTACFSGSVCAGYERNQAMPVEKVLYGEVISVRRLTQQELVADKHRGWRTFGGALLGGVIGHQFGGGSG
QDVATVLGALLGGVIANQAGGDSYRELRLIELMIRQEDDTQIMILQDEDSGMPFKAGDEVRVVYLQGMVRVDKAM

Specific function: Unknown

COG id: COG3134

COG function: function code S; Predicted outer membrane lipoprotein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16880; Mature: 16880

Theoretical pI: Translated: 5.21; Mature: 5.21

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWKPALYCLVLLTACFSGSVCAGYERNQAMPVEKVLYGEVISVRRLTQQELVADKHRGWR
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
TFGGALLGGVIGHQFGGGSGQDVATVLGALLGGVIANQAGGDSYRELRLIELMIRQEDDT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
QIMILQDEDSGMPFKAGDEVRVVYLQGMVRVDKAM
EEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHCCC
>Mature Secondary Structure
MWKPALYCLVLLTACFSGSVCAGYERNQAMPVEKVLYGEVISVRRLTQQELVADKHRGWR
CCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
TFGGALLGGVIGHQFGGGSGQDVATVLGALLGGVIANQAGGDSYRELRLIELMIRQEDDT
HHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCC
QIMILQDEDSGMPFKAGDEVRVVYLQGMVRVDKAM
EEEEEEECCCCCCCCCCCCEEEEEEHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA