| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is yceG [C]
Identifier: 119775179
GI number: 119775179
Start: 2480486
End: 2481460
Strand: Reverse
Name: yceG [C]
Synonym: Sama_2044
Alternate gene names: 119775179
Gene position: 2481460-2480486 (Counterclockwise)
Preceding gene: 119775180
Following gene: 119775178
Centisome position: 57.63
GC content: 53.64
Gene sequence:
>975_bases ATGTCCCTGACTTTGCTCGGCGCCGCTACGGCGTTATGGGGTATGAAAGAGCTTGAAACCTTTGCCAACAGGCCTCTGAT GCTTGAGCAGGCGAGGGAGCTGGAACTCAATCGGGGAACCAATGCCCGCGCATTGGGCAAAGAGTTGGTTGAGCAGGGAC TCCTTGAAGGCTCATGGCATTACGATTGGTATCTGCGATTAAATCCCGCCATGGCGGGCATTCGTCAGGGGTTGTACGAA ATCACCCCAGGCGACACGGTCAAGTCACTGCTTGAAAAGCTCATCAGCGGTAAAGTGAAGGACTTCGCAATCACTTTGGT TGAAGGCCAAACGCTGCGGGAATGGCAGGCTAAGCTGGAAACTGCCCCCAGGCTGAATTGGGACGCGGATGTTTTCCATA AGGTTCTCAAGGCGAACGGTGATGATTCCGGATTGCCGGAAGGGAAATTTTTTCCCGATACCTACAGCTATCCTGCCAAC CAGGATGTGGAAACGCTGCTTACCCAGAGCTACCTGAAGATGCAGCAAGAGCTGGCAGCGGCCTGGCAGGTCAGAGCTCC CGATTTACCTCTGGCGAGCGCCTATGAGCTGCTTATCCTGGCGTCCATTATAGAGAAAGAGACCGGCAAGGCCGAGGAGC GCCCCTTGATTGCTGCGGTGTTTATCAACCGGCTGCGAAAGGGAATGCGACTGCAGACAGACCCCACGGTGATTTATGGC ATGGGAACGCGCTTTAACGGCAATATCACCCGTAAAGATCTGCGTGAGGATACGCCCTTCAACACCTATCGCATTCAAGG ACTGCCACCTACGCCTATTGCGGCACCCGGACGTGAAGCCTTGATGGCGGCGGCACAACCGGCACAATCAGATTATCTTT ACTTTGTGTCCAGAAACGATGGCAGCCACGTATTTTCCCGCACACTCGCTGAACACAATCGCGCAGTAAACCAATTTCAG AGAAAACAAAAATGA
Upstream 100 bases:
>100_bases ATAACTTTCATTATCAGGTTTTTACTGAAAGCCAGAGCATTCGCGATGCGCTGGAATTGAATTTATGAAGAGAATTCTCA TTGGGATAGTTGGGGCGATT
Downstream 100 bases:
>100_bases CGCAGAATCCCGGTAAATTCATTGTGATTGAGGGGCTTGAAGGCGCAGGTAAGTCCAGTGCCATCACACTGGTACATGAC TTTATCGAGAAGCACACCGG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 324; Mature: 323
Protein sequence:
>324_residues MSLTLLGAATALWGMKELETFANRPLMLEQARELELNRGTNARALGKELVEQGLLEGSWHYDWYLRLNPAMAGIRQGLYE ITPGDTVKSLLEKLISGKVKDFAITLVEGQTLREWQAKLETAPRLNWDADVFHKVLKANGDDSGLPEGKFFPDTYSYPAN QDVETLLTQSYLKMQQELAAAWQVRAPDLPLASAYELLILASIIEKETGKAEERPLIAAVFINRLRKGMRLQTDPTVIYG MGTRFNGNITRKDLREDTPFNTYRIQGLPPTPIAAPGREALMAAAQPAQSDYLYFVSRNDGSHVFSRTLAEHNRAVNQFQ RKQK
Sequences:
>Translated_324_residues MSLTLLGAATALWGMKELETFANRPLMLEQARELELNRGTNARALGKELVEQGLLEGSWHYDWYLRLNPAMAGIRQGLYE ITPGDTVKSLLEKLISGKVKDFAITLVEGQTLREWQAKLETAPRLNWDADVFHKVLKANGDDSGLPEGKFFPDTYSYPAN QDVETLLTQSYLKMQQELAAAWQVRAPDLPLASAYELLILASIIEKETGKAEERPLIAAVFINRLRKGMRLQTDPTVIYG MGTRFNGNITRKDLREDTPFNTYRIQGLPPTPIAAPGREALMAAAQPAQSDYLYFVSRNDGSHVFSRTLAEHNRAVNQFQ RKQK >Mature_323_residues SLTLLGAATALWGMKELETFANRPLMLEQARELELNRGTNARALGKELVEQGLLEGSWHYDWYLRLNPAMAGIRQGLYEI TPGDTVKSLLEKLISGKVKDFAITLVEGQTLREWQAKLETAPRLNWDADVFHKVLKANGDDSGLPEGKFFPDTYSYPANQ DVETLLTQSYLKMQQELAAAWQVRAPDLPLASAYELLILASIIEKETGKAEERPLIAAVFINRLRKGMRLQTDPTVIYGM GTRFNGNITRKDLREDTPFNTYRIQGLPPTPIAAPGREALMAAAQPAQSDYLYFVSRNDGSHVFSRTLAEHNRAVNQFQR KQK
Specific function: Unknown
COG id: COG1559
COG function: function code R; Predicted periplasmic solute-binding protein
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the UPF0755 family [H]
Homologues:
Organism=Escherichia coli, GI1787339, Length=317, Percent_Identity=41.3249211356467, Blast_Score=238, Evalue=3e-64,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003770 [H]
Pfam domain/function: PF02618 ADC_lyase [H]
EC number: NA
Molecular weight: Translated: 36454; Mature: 36323
Theoretical pI: Translated: 7.79; Mature: 7.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLTLLGAATALWGMKELETFANRPLMLEQARELELNRGTNARALGKELVEQGLLEGSWH CCEEEHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC YDWYLRLNPAMAGIRQGLYEITPGDTVKSLLEKLISGKVKDFAITLVEGQTLREWQAKLE EEEEEEECHHHHHHHHCCEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHH TAPRLNWDADVFHKVLKANGDDSGLPEGKFFPDTYSYPANQDVETLLTQSYLKMQQELAA CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH AWQVRAPDLPLASAYELLILASIIEKETGKAEERPLIAAVFINRLRKGMRLQTDPTVIYG HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHCCEECCCCEEEEE MGTRFNGNITRKDLREDTPFNTYRIQGLPPTPIAAPGREALMAAAQPAQSDYLYFVSRND CCCEECCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCC GSHVFSRTLAEHNRAVNQFQRKQK CHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure SLTLLGAATALWGMKELETFANRPLMLEQARELELNRGTNARALGKELVEQGLLEGSWH CEEEHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCC YDWYLRLNPAMAGIRQGLYEITPGDTVKSLLEKLISGKVKDFAITLVEGQTLREWQAKLE EEEEEEECHHHHHHHHCCEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHH TAPRLNWDADVFHKVLKANGDDSGLPEGKFFPDTYSYPANQDVETLLTQSYLKMQQELAA CCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH AWQVRAPDLPLASAYELLILASIIEKETGKAEERPLIAAVFINRLRKGMRLQTDPTVIYG HHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHCCCHHHHHHHHHHHHCCEECCCCEEEEE MGTRFNGNITRKDLREDTPFNTYRIQGLPPTPIAAPGREALMAAAQPAQSDYLYFVSRND CCCEECCCCCHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHCCCCCCCEEEEEECCC GSHVFSRTLAEHNRAVNQFQRKQK CHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]