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The map label for this gene is yiaD [H]

Identifier: 119775139

GI number: 119775139

Start: 2434710

End: 2435432

Strand: Reverse

Name: yiaD [H]

Synonym: Sama_2004

Alternate gene names: 119775139

Gene position: 2435432-2434710 (Counterclockwise)

Preceding gene: 119775144

Following gene: 119775138

Centisome position: 56.56

GC content: 56.71

Gene sequence:

>723_bases
ATGAAAACCCAATTACTCGCTTCTGTTATTTCTCTGGCTCTGATTGCACCTGCGGCCAATGCCGCTGAGCGCGACCATAA
CGAAGAACTGGTCGGTTTGGGCTCAGGTGCCCTGATTGGTGCCGCCGTGGGGGGACCCGTAGGTGCCATCATAGGCGCCT
TTGCCGGCGGCATTATCGGAAAATCCGTCGGTGATGAGGAAGAGATTAACGATCATAAGCAGGCACTCGCCACACAGGAT
GCCGAAATTGAACGCCTTGCTCAAAAAAGCGCCAACTATGATGCACTTGCCAGTGACTATGCCATAACCCGCGCCCAGCT
GAATACCCTGCAAACAGCCCGGGAGGCCAAGCTGACCGAGCTTACGCTCGGGCTTAACGTGCAGTTCAAAACCGGATCGT
CGGACATTGAACCCCACTTTCAAAACCAACTGCAGGCTGTGGCCCGCGTGATGGAGGCCCAGCCAGATCTGGTTATTGAT
TTGAAAGGCTTTGCCGACCGCAGGGGAGACAGTGACTACAACCAGGCCCTGTCTGAGCAGCGCCTCGCCAATGTGAAAGC
CTATCTCGTCAGTGCCGGTGTGGCATCAGACCGGCTCCAGGGAAAGGCCTTTGGCGCCACAGCGCCGCTCAGTGCCGATG
CGGGCTTTGAAAGTGACTTTTTTGACCGTCGTGTGACTCTGGAGCTGGTTCCTGCGGATACCAGCATGGCGGCAACGCAC
TGA

Upstream 100 bases:

>100_bases
CGCCATTTTTACTCCCCTTGATTGCCACGAGAGGGGAGTTAAATAAGTTCATCACCAACAGGCCGGGCACGTCCGGCAGT
CCAACAAGGAATGATGACTT

Downstream 100 bases:

>100_bases
TAAAAGTCCATTCATAACAACGGCAAAGTACGGGTAATGAATAGCATGAAGGATGATAAGAGTATGTATAGCCAAAGGAA
GGTCGTGCCCAAGGTGGAGA

Product: OmpA family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 240; Mature: 240

Protein sequence:

>240_residues
MKTQLLASVISLALIAPAANAAERDHNEELVGLGSGALIGAAVGGPVGAIIGAFAGGIIGKSVGDEEEINDHKQALATQD
AEIERLAQKSANYDALASDYAITRAQLNTLQTAREAKLTELTLGLNVQFKTGSSDIEPHFQNQLQAVARVMEAQPDLVID
LKGFADRRGDSDYNQALSEQRLANVKAYLVSAGVASDRLQGKAFGATAPLSADAGFESDFFDRRVTLELVPADTSMAATH

Sequences:

>Translated_240_residues
MKTQLLASVISLALIAPAANAAERDHNEELVGLGSGALIGAAVGGPVGAIIGAFAGGIIGKSVGDEEEINDHKQALATQD
AEIERLAQKSANYDALASDYAITRAQLNTLQTAREAKLTELTLGLNVQFKTGSSDIEPHFQNQLQAVARVMEAQPDLVID
LKGFADRRGDSDYNQALSEQRLANVKAYLVSAGVASDRLQGKAFGATAPLSADAGFESDFFDRRVTLELVPADTSMAATH
>Mature_240_residues
MKTQLLASVISLALIAPAANAAERDHNEELVGLGSGALIGAAVGGPVGAIIGAFAGGIIGKSVGDEEEINDHKQALATQD
AEIERLAQKSANYDALASDYAITRAQLNTLQTAREAKLTELTLGLNVQFKTGSSDIEPHFQNQLQAVARVMEAQPDLVID
LKGFADRRGDSDYNQALSEQRLANVKAYLVSAGVASDRLQGKAFGATAPLSADAGFESDFFDRRVTLELVPADTSMAATH

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=111, Percent_Identity=30.6306306306306, Blast_Score=68, Evalue=7e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 25221; Mature: 25221

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS00107 PROTEIN_KINASE_ATP ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTQLLASVISLALIAPAANAAERDHNEELVGLGSGALIGAAVGGPVGAIIGAFAGGIIG
CCHHHHHHHHHHHHHHCCCHHHHCCCCCCEEECCCCCEEHHHHCCHHHHHHHHHHHHHHH
KSVGDEEEINDHKQALATQDAEIERLAQKSANYDALASDYAITRAQLNTLQTAREAKLTE
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHE
LTLGLNVQFKTGSSDIEPHFQNQLQAVARVMEAQPDLVIDLKGFADRRGDSDYNQALSEQ
EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHH
RLANVKAYLVSAGVASDRLQGKAFGATAPLSADAGFESDFFDRRVTLELVPADTSMAATH
HHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHCCEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MKTQLLASVISLALIAPAANAAERDHNEELVGLGSGALIGAAVGGPVGAIIGAFAGGIIG
CCHHHHHHHHHHHHHHCCCHHHHCCCCCCEEECCCCCEEHHHHCCHHHHHHHHHHHHHHH
KSVGDEEEINDHKQALATQDAEIERLAQKSANYDALASDYAITRAQLNTLQTAREAKLTE
CCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHE
LTLGLNVQFKTGSSDIEPHFQNQLQAVARVMEAQPDLVIDLKGFADRRGDSDYNQALSEQ
EEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHH
RLANVKAYLVSAGVASDRLQGKAFGATAPLSADAGFESDFFDRRVTLELVPADTSMAATH
HHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCHHCCEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]