| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775127
Identifier: 119775127
GI number: 119775127
Start: 2422789
End: 2423628
Strand: Direct
Name: 119775127
Synonym: Sama_1992
Alternate gene names: NA
Gene position: 2422789-2423628 (Clockwise)
Preceding gene: 119775125
Following gene: 119775128
Centisome position: 56.26
GC content: 53.1
Gene sequence:
>840_bases ATGAAATTGGAAACTATTGATTACCGCTCGCCCGACGCGGCAGCACAATTCGTTCAATCATTGCGGGATACCGGCTTTGG CGTATTGTCAAACCACCCTATTCAGCAATCTTTGGTCGAAGCCATTTATAAAGATTGGTACGAATTCTTCCAGAGTGGTG CCAAGGAAGAATTTCGCTTCAATCCGGAAACCCAGGACGGATTTTTCCCGGCAGATGTGTCGGAAACGGCCAAAGGTCAC AGTGTAAAAGACATAAAAGAGTACTACCACGTTTACCCGTGGGGCCGTATACCCGAGAGCCTCAGAGCCAACATTCTGGC CTACTATGACCACGCCAATCAGCTGGCGGCCGAATTGTTGTCCTGGGTTGAAGCTCACAGCCCGGATGAAGTGAAGGCTC TCTTTACCGAGCCACTGCCAAACATGATAGATGGTAGCCACAAGACCCTGCTGCGAGTGCTCCACTATCCCCCCATGAAG GGTGATGAAGAGCCGGGAGCCATCCGCGCCGCCGCCCATGAAGACATCAACCTGCTTACCGTGTTGCCTGCCGCCAATGA ACCCGGGCTGCAAGTAAAAGCCAAAGACGGTACCTGGCTGGATGTCCCTTCAGATTTTGGCAACATTATCATCAACATCG GTGACATGTTGCAGGAAGCCTCCGGCGGTTACTTCCCATCGACTTCCCACCGGGTAATTAACCCCGAAGGCATGGACAAA ACCAAGTCGCGGATTTCCCTGCCACTGTTTTTACACCCTCGCCCTGACGTGGTGCTGTCGGAGCGTTATACCGCCGACAG CTATTTGATGGAGCGTCTGCGCGAGCTCGGCGTCATCTGA
Upstream 100 bases:
>100_bases ATACTTTATTTACGCCAAAGCGAACACAGAGTTTGCACTCCGCTACGCCCCCGACTAGACTCTCGCCCGGGGTTAAACCA CAACAAAAAGAAAACATAAC
Downstream 100 bases:
>100_bases TGATGGCCAAAAGCGTCCCTCGGGACGCTTTTTTTGTGCCTGATGGCGGATACGGGTAGAATATGCGCCCCAAGACAGAG GTAAGCAGGATTTAAACAAT
Product: isopenicillin-N synthase
Products: isopenicillin N; H2O
Alternate protein names: Oxidoreductase; 2OG-Fe(II) Oxygenase Family Oxidoreductase; Oxidoreductase 2OG-Fe(II) Oxygenase Family; Isopenicillin N Synthase; Iron/Ascorbate Family Oxidoreductase; 2OG-Fe(II) Oxygenase Superfamily Protein; Oxidoreductase 2OG-Fe(II) Oxygenase Family Protein; Flavonol Synthase/Dioxygenase; 2og-Fe(Ii) Oxygenase; Iron/Ascorbate Oxidoreductase; Oxidoreductase Iron/Ascorbate Family Protein; Iron/Ascorbate-Dependent Oxidoreductase; 1-Aminocyclopropane-1-Carboxylate Oxidase; Oxygenase; Isopenicillin N Synthase And Related Dioxygenases; Oxidoreductase 2og-Fe(Ii) Oxygenase Family; Iron/Ascorbate-Dependent Oxidoreductase Family Protein; Oxidoreductase Iron/Ascorbate Family; Fe-Containing Oxidoreductase; Isopenicillin-N Synthase; Flavonol Synthase/Flavanone 3-Hydroxylase; 2-Oxoglutarate And Fe(Ii)-Dependent Oxygenase; Oxygenase/Oxidoreductase; Iron/Ascorbate Oxidoreductase Family Protein
Number of amino acids: Translated: 279; Mature: 279
Protein sequence:
>279_residues MKLETIDYRSPDAAAQFVQSLRDTGFGVLSNHPIQQSLVEAIYKDWYEFFQSGAKEEFRFNPETQDGFFPADVSETAKGH SVKDIKEYYHVYPWGRIPESLRANILAYYDHANQLAAELLSWVEAHSPDEVKALFTEPLPNMIDGSHKTLLRVLHYPPMK GDEEPGAIRAAAHEDINLLTVLPAANEPGLQVKAKDGTWLDVPSDFGNIIINIGDMLQEASGGYFPSTSHRVINPEGMDK TKSRISLPLFLHPRPDVVLSERYTADSYLMERLRELGVI
Sequences:
>Translated_279_residues MKLETIDYRSPDAAAQFVQSLRDTGFGVLSNHPIQQSLVEAIYKDWYEFFQSGAKEEFRFNPETQDGFFPADVSETAKGH SVKDIKEYYHVYPWGRIPESLRANILAYYDHANQLAAELLSWVEAHSPDEVKALFTEPLPNMIDGSHKTLLRVLHYPPMK GDEEPGAIRAAAHEDINLLTVLPAANEPGLQVKAKDGTWLDVPSDFGNIIINIGDMLQEASGGYFPSTSHRVINPEGMDK TKSRISLPLFLHPRPDVVLSERYTADSYLMERLRELGVI >Mature_279_residues MKLETIDYRSPDAAAQFVQSLRDTGFGVLSNHPIQQSLVEAIYKDWYEFFQSGAKEEFRFNPETQDGFFPADVSETAKGH SVKDIKEYYHVYPWGRIPESLRANILAYYDHANQLAAELLSWVEAHSPDEVKALFTEPLPNMIDGSHKTLLRVLHYPPMK GDEEPGAIRAAAHEDINLLTVLPAANEPGLQVKAKDGTWLDVPSDFGNIIINIGDMLQEASGGYFPSTSHRVINPEGMDK TKSRISLPLFLHPRPDVVLSERYTADSYLMERLRELGVI
Specific function: Unknown
COG id: COG3491
COG function: function code R; Isopenicillin N synthase and related dioxygenases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Drosophila melanogaster, GI28572124, Length=262, Percent_Identity=25.9541984732824, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI85816264, Length=258, Percent_Identity=26.3565891472868, Blast_Score=67, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 1.21.3.1
Molecular weight: Translated: 31430; Mature: 31430
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLETIDYRSPDAAAQFVQSLRDTGFGVLSNHPIQQSLVEAIYKDWYEFFQSGAKEEFRF CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC NPETQDGFFPADVSETAKGHSVKDIKEYYHVYPWGRIPESLRANILAYYDHANQLAAELL CCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCEEHHHHHHHHHHHH SWVEAHSPDEVKALFTEPLPNMIDGSHKTLLRVLHYPPMKGDEEPGAIRAAAHEDINLLT HHHHCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEEE VLPAANEPGLQVKAKDGTWLDVPSDFGNIIINIGDMLQEASGGYFPSTSHRVINPEGMDK EEECCCCCCCEEEECCCCEEECCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEECCCCCCH TKSRISLPLFLHPRPDVVLSERYTADSYLMERLRELGVI HHHHCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHCCC >Mature Secondary Structure MKLETIDYRSPDAAAQFVQSLRDTGFGVLSNHPIQQSLVEAIYKDWYEFFQSGAKEEFRF CCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC NPETQDGFFPADVSETAKGHSVKDIKEYYHVYPWGRIPESLRANILAYYDHANQLAAELL CCCCCCCCCCCCHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHCCCEEHHHHHHHHHHHH SWVEAHSPDEVKALFTEPLPNMIDGSHKTLLRVLHYPPMKGDEEPGAIRAAAHEDINLLT HHHHCCCCHHHHHHHHCCCCHHHCCCHHHHHHHHHCCCCCCCCCCCCEEECCCCCCEEEE VLPAANEPGLQVKAKDGTWLDVPSDFGNIIINIGDMLQEASGGYFPSTSHRVINPEGMDK EEECCCCCCCEEEECCCCEEECCCCCCCEEEHHHHHHHHHCCCCCCCCCCEEECCCCCCH TKSRISLPLFLHPRPDVVLSERYTADSYLMERLRELGVI HHHHCCCEEEECCCCCEEECCCCCHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine; O2
Specific reaction: N-[(5S)-5-amino-5-carboxypentanoyl]-L-cysteinyl-D-valine + O2 = isopenicillin N + 2 H2O
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA