Click here to switch to the map view.

The map label for this gene is rbgA [H]

Identifier: 119775128

GI number: 119775128

Start: 2423727

End: 2424671

Strand: Direct

Name: rbgA [H]

Synonym: Sama_1993

Alternate gene names: 119775128

Gene position: 2423727-2424671 (Clockwise)

Preceding gene: 119775127

Following gene: 119775131

Centisome position: 56.29

GC content: 53.97

Gene sequence:

>945_bases
ATGGCGATTCAATGGTATCCGGGACACATGCACAAGGCACAAAAGGAAATTGCCGAAGCCATGCCCCAGGTCGATTTGGT
GATAGAGGTACTGGATGCCCGCATTCCCTACTCCAGCGAAAACCCCATGGTTGCCAAACTTCGCGGTGACAAACCCTGTA
TTAAACTGCTGAACAAATGCGATCTTGCCGATCCGGCCATCACAGAGGCCTGGATAGCACACCTTGAAAAAGAACAAGGT
GTGAAGGCCATGGCCGTCACCACCTTACAGCCCGGTCATCTTAAAACGGTTATTCCTGAACTTGTGCGCAAGTTGGTGCC
TGAGCGTGACCGCGCGGACAAAGACATACGCACCATGATTATGGGGATCCCCAATGTGGGTAAATCGACCATCATCAATA
CGCTGGCTGGACGTGTGATTGCCAAAACCGGCAACGAGCCTGCGGTCACCAAGGCACAGCAGCGCATCAATCTCAAAAAC
GGTATTGTACTGTCAGATACACCGGGCATTCTGTGGCCCAAGGTGGACAACGAAGCCAGCAGCTATCGTCTGGCCGTGAC
CGGCGCCATCAAAGACACCGCCATGGAATATGAAGACGTAGCGCTCTTTGCCGCAGCTTTTTTTCGCGATGCTTATCCTG
CTGAGCTGAAAGAACGTTATAAGCTCGATGAACTGTCCGATGACGATGTGGCATTGCTGGAAGACATTGGCCGCAAGCGA
GGGGCGCTGCGAAGCGGTGGTTATGTGGATCTGCACAAAGCCGCCGAGCTGCTGCTGCACGAATTCCGCAGTGGCAAACT
GGGGCTGCTGAGCCTGGAAACACCGGAAATGGCTGAAATCGAAAAAGCCGAAGTGGAGCGGATCCTCGCAGAGAAAGAAG
CCCTGCGTCAGGAGAAACTGGCCGCCGAAAAGCTGCGCCGTTCCGGTAAGCGCCACAATAACTGA

Upstream 100 bases:

>100_bases
GATGATGGCCAAAAGCGTCCCTCGGGACGCTTTTTTTGTGCCTGATGGCGGATACGGGTAGAATATGCGCCCCAAGACAG
AGGTAAGCAGGATTTAAACA

Downstream 100 bases:

>100_bases
GCACCATCAAAACCAAGCGCCACAATAACCGGACGCATATAAACCGGGTATCACAGCAACGAGGCGTTAGCCTGTGCACC
CATGCCAAACCGGACCAGCG

Product: ribosomal biogenesis GTPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 313

Protein sequence:

>314_residues
MAIQWYPGHMHKAQKEIAEAMPQVDLVIEVLDARIPYSSENPMVAKLRGDKPCIKLLNKCDLADPAITEAWIAHLEKEQG
VKAMAVTTLQPGHLKTVIPELVRKLVPERDRADKDIRTMIMGIPNVGKSTIINTLAGRVIAKTGNEPAVTKAQQRINLKN
GIVLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAAFFRDAYPAELKERYKLDELSDDDVALLEDIGRKR
GALRSGGYVDLHKAAELLLHEFRSGKLGLLSLETPEMAEIEKAEVERILAEKEALRQEKLAAEKLRRSGKRHNN

Sequences:

>Translated_314_residues
MAIQWYPGHMHKAQKEIAEAMPQVDLVIEVLDARIPYSSENPMVAKLRGDKPCIKLLNKCDLADPAITEAWIAHLEKEQG
VKAMAVTTLQPGHLKTVIPELVRKLVPERDRADKDIRTMIMGIPNVGKSTIINTLAGRVIAKTGNEPAVTKAQQRINLKN
GIVLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAAFFRDAYPAELKERYKLDELSDDDVALLEDIGRKR
GALRSGGYVDLHKAAELLLHEFRSGKLGLLSLETPEMAEIEKAEVERILAEKEALRQEKLAAEKLRRSGKRHNN
>Mature_313_residues
AIQWYPGHMHKAQKEIAEAMPQVDLVIEVLDARIPYSSENPMVAKLRGDKPCIKLLNKCDLADPAITEAWIAHLEKEQGV
KAMAVTTLQPGHLKTVIPELVRKLVPERDRADKDIRTMIMGIPNVGKSTIINTLAGRVIAKTGNEPAVTKAQQRINLKNG
IVLSDTPGILWPKVDNEASSYRLAVTGAIKDTAMEYEDVALFAAAFFRDAYPAELKERYKLDELSDDDVALLEDIGRKRG
ALRSGGYVDLHKAAELLLHEFRSGKLGLLSLETPEMAEIEKAEVERILAEKEALRQEKLAAEKLRRSGKRHNN

Specific function: Binds GTP and GDP [H]

COG id: COG1161

COG function: function code R; Predicted GTPases

Gene ontology:

Cell location: Cytoplasm (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 G (guanine nucleotide-binding) domain [H]

Homologues:

Organism=Homo sapiens, GI93277113, Length=293, Percent_Identity=30.0341296928328, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI7019419, Length=267, Percent_Identity=27.3408239700375, Blast_Score=101, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI193211047, Length=216, Percent_Identity=31.9444444444444, Blast_Score=96, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17534827, Length=274, Percent_Identity=29.1970802919708, Blast_Score=93, Evalue=2e-19,
Organism=Caenorhabditis elegans, GI71990926, Length=227, Percent_Identity=30.3964757709251, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI32563983, Length=227, Percent_Identity=30.3964757709251, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI32563985, Length=227, Percent_Identity=30.3964757709251, Blast_Score=91, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI25143545, Length=281, Percent_Identity=25.6227758007117, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI115535155, Length=281, Percent_Identity=25.6227758007117, Blast_Score=68, Evalue=5e-12,
Organism=Saccharomyces cerevisiae, GI6324381, Length=270, Percent_Identity=28.1481481481481, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6320842, Length=282, Percent_Identity=28.0141843971631, Blast_Score=77, Evalue=3e-15,
Organism=Drosophila melanogaster, GI85815858, Length=303, Percent_Identity=28.3828382838284, Blast_Score=115, Evalue=4e-26,
Organism=Drosophila melanogaster, GI19922460, Length=265, Percent_Identity=27.5471698113208, Blast_Score=91, Evalue=7e-19,
Organism=Drosophila melanogaster, GI28572990, Length=308, Percent_Identity=26.2987012987013, Blast_Score=74, Evalue=9e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023179
- InterPro:   IPR019991
- InterPro:   IPR016478
- InterPro:   IPR002917 [H]

Pfam domain/function: PF01926 MMR_HSR1 [H]

EC number: NA

Molecular weight: Translated: 34943; Mature: 34812

Theoretical pI: Translated: 7.22; Mature: 7.22

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAIQWYPGHMHKAQKEIAEAMPQVDLVIEVLDARIPYSSENPMVAKLRGDKPCIKLLNKC
CEEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHC
DLADPAITEAWIAHLEKEQGVKAMAVTTLQPGHLKTVIPELVRKLVPERDRADKDIRTMI
CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
MGIPNVGKSTIINTLAGRVIAKTGNEPAVTKAQQRINLKNGIVLSDTPGILWPKVDNEAS
HCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCEECCCCCCCCC
SYRLAVTGAIKDTAMEYEDVALFAAAFFRDAYPAELKERYKLDELSDDDVALLEDIGRKR
CEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHH
GALRSGGYVDLHKAAELLLHEFRSGKLGLLSLETPEMAEIEKAEVERILAEKEALRQEKL
CCCCCCCCEEHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
AAEKLRRSGKRHNN
HHHHHHHCCCCCCC
>Mature Secondary Structure 
AIQWYPGHMHKAQKEIAEAMPQVDLVIEVLDARIPYSSENPMVAKLRGDKPCIKLLNKC
EEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCEEEEECCCCHHHHHHHHC
DLADPAITEAWIAHLEKEQGVKAMAVTTLQPGHLKTVIPELVRKLVPERDRADKDIRTMI
CCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHH
MGIPNVGKSTIINTLAGRVIAKTGNEPAVTKAQQRINLKNGIVLSDTPGILWPKVDNEAS
HCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCEEEECCCCEECCCCCCCCC
SYRLAVTGAIKDTAMEYEDVALFAAAFFRDAYPAELKERYKLDELSDDDVALLEDIGRKR
CEEEEEEECHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHH
GALRSGGYVDLHKAAELLLHEFRSGKLGLLSLETPEMAEIEKAEVERILAEKEALRQEKL
CCCCCCCCEEHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHH
AAEKLRRSGKRHNN
HHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]