Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775094

Identifier: 119775094

GI number: 119775094

Start: 2388430

End: 2389005

Strand: Reverse

Name: 119775094

Synonym: Sama_1959

Alternate gene names: NA

Gene position: 2389005-2388430 (Counterclockwise)

Preceding gene: 119775096

Following gene: 119775093

Centisome position: 55.48

GC content: 46.7

Gene sequence:

>576_bases
ATGTTTATTCGTACTTTGTTGGGCGCAGCCCTGCTGGTATCTGCCTCGGGTGCCATGGCCGATTGGCAATTGAATGCAGC
CAATTCCAACGTCAGCTTCATCTCGGTCAAGAAGGGCGATGTTGCTGAAGTTCACAAATTTAAAAGCCTTGAAGGCAAAC
TGTCCGAACAAGGCGATTTCAGCCTCAATATTCCACTGGCGTCTGTCGATACAGGTATTGAAATTCGCGATGAGCGCATG
AAAAGCATGTTATTTGAAGTGGAGCAATTTCCCTCATTAACACTTTCTGCCAAGATAGAGCCGTCATTGGTGAACGCATT
GAAACCCGGTGAAATCACAAAAGCGGAAATTCCAGCGACTGTGGAATTGCATGGTAAATCAGACAAGCTCAATGTCGAAG
TGACTGTGGCAAGAGTCTCTGATAACACCCTGATGGTCAGCAGCAGTGCCATGTTAATCGTTAACGCAGCCAATTTTGGT
TTAACCGCCGGGATTGAAAAGTTGCGTGAATTGGCGGGATTATCGGCCATCAGCAGTGCCGTACCGGTTTCATTCGTGCT
AACACTTGAGAAATAA

Upstream 100 bases:

>100_bases
CAGCTAGAGTTATAGTGGCCGTTTGGTTTATTGTTTGTGTTGTCACTAATTTAGCAATTCAGGAATGGCCTGAACGCAAC
GAAACACAAGGAGACAAGTG

Downstream 100 bases:

>100_bases
CAGGAATTGCATGCTTTAAGGAAGAAGAAAGCAACTTGTTCCATAATAAAAATGCGGGCTTAAACCCGACATTAATGCAA
TACGGGATTTGACATGGTCA

Product: hypothetical protein

Products: NA

Alternate protein names: YceI Like Family; YceI Like Family Protein; YceI-Like Family Protein

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MFIRTLLGAALLVSASGAMADWQLNAANSNVSFISVKKGDVAEVHKFKSLEGKLSEQGDFSLNIPLASVDTGIEIRDERM
KSMLFEVEQFPSLTLSAKIEPSLVNALKPGEITKAEIPATVELHGKSDKLNVEVTVARVSDNTLMVSSSAMLIVNAANFG
LTAGIEKLRELAGLSAISSAVPVSFVLTLEK

Sequences:

>Translated_191_residues
MFIRTLLGAALLVSASGAMADWQLNAANSNVSFISVKKGDVAEVHKFKSLEGKLSEQGDFSLNIPLASVDTGIEIRDERM
KSMLFEVEQFPSLTLSAKIEPSLVNALKPGEITKAEIPATVELHGKSDKLNVEVTVARVSDNTLMVSSSAMLIVNAANFG
LTAGIEKLRELAGLSAISSAVPVSFVLTLEK
>Mature_191_residues
MFIRTLLGAALLVSASGAMADWQLNAANSNVSFISVKKGDVAEVHKFKSLEGKLSEQGDFSLNIPLASVDTGIEIRDERM
KSMLFEVEQFPSLTLSAKIEPSLVNALKPGEITKAEIPATVELHGKSDKLNVEVTVARVSDNTLMVSSSAMLIVNAANFG
LTAGIEKLRELAGLSAISSAVPVSFVLTLEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20318; Mature: 20318

Theoretical pI: Translated: 5.04; Mature: 5.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFIRTLLGAALLVSASGAMADWQLNAANSNVSFISVKKGDVAEVHKFKSLEGKLSEQGDF
CHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCE
SLNIPLASVDTGIEIRDERMKSMLFEVEQFPSLTLSAKIEPSLVNALKPGEITKAEIPAT
EEECEEEECCCCCEEHHHHHHHHHHHHHHCCCEEEEEEECHHHHHCCCCCCCEECCCCEE
VELHGKSDKLNVEVTVARVSDNTLMVSSSAMLIVNAANFGLTAGIEKLRELAGLSAISSA
EEEECCCCEEEEEEEEEEECCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHCHHHHHHC
VPVSFVLTLEK
CCEEEEEEECC
>Mature Secondary Structure
MFIRTLLGAALLVSASGAMADWQLNAANSNVSFISVKKGDVAEVHKFKSLEGKLSEQGDF
CHHHHHHHHHHHHCCCCCCEEEEEECCCCCEEEEEECCCCHHHHHHHHCCCCCCCCCCCE
SLNIPLASVDTGIEIRDERMKSMLFEVEQFPSLTLSAKIEPSLVNALKPGEITKAEIPAT
EEECEEEECCCCCEEHHHHHHHHHHHHHHCCCEEEEEEECHHHHHCCCCCCCEECCCCEE
VELHGKSDKLNVEVTVARVSDNTLMVSSSAMLIVNAANFGLTAGIEKLRELAGLSAISSA
EEEECCCCEEEEEEEEEEECCCEEEEECCEEEEEEECCCCHHHHHHHHHHHHCHHHHHHC
VPVSFVLTLEK
CCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA