| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is hisH [H]
Identifier: 119775080
GI number: 119775080
Start: 2373317
End: 2374030
Strand: Direct
Name: hisH [H]
Synonym: Sama_1945
Alternate gene names: 119775080
Gene position: 2373317-2374030 (Clockwise)
Preceding gene: 119775079
Following gene: 119775081
Centisome position: 55.11
GC content: 57.42
Gene sequence:
>714_bases ATGAGTGAGGAGGCTATTCCCAACGCTGAGACCGAGAAATCGGCGCCCGAACTGGTCATCATCGACACCGGCTGCGCCAA TTTAAGCTCGGTGAAGTTTGCCTTTGAGCGCCTTGGAGCAAAGGTGCTGGTAAGCCCAGACAGCGAAGTGCTTCGCGCCG CACCACGTTTGGTGCTGCCCGGCGTTGGCACAGCAGCGGCAGCCATGGATGCCCTGAGAGCCAGAGCGCTTGATAAACTG ATCCCAACCCTGCGCCAGCCTGTGCTCGGAGTCTGCCTTGGGATGCAGCTGTTGATGACCCGCTCACACGAGCGCGGCGC CAAGGGCGAGGATATTGATTGCCTTGATATTATCCCAGGTGAAATCCGTGAGTTGGACGCATCAGGCCACCCCCTGCCCC ACATGGGGTGGAATCAGCTAACGGTGTCCAATCATCCCCTATTTGCAGGCATTGAGCCCGGCGAGTGGGTGTATTTTGTG CACTCCTTCTGTGCGCCAACATCCGCAGCCACCATCGCCAGCTGCGAATACGGTGAAACCTTTAGCGCCGCCATCGCCAA AGACAACTTTATGGGGGTACAGTTCCATCCGGAGAAAAGCGCCACGACTGGCGCCAAAATCCTCAGGAATTTTCTGGCAA TCACCCTGGCCGACCTGGGGCTTGATGACCATTTTCGAGCGCAATCACATGCTGGCACCTTGGAGCAATCATGA
Upstream 100 bases:
>100_bases ACCACAAGGTAGAAGCCCTGTTCAAGGTGCTTGGCCGCACCCTACGCCAGGCCATTGCCATCGAAGGTGATGCCCTGCCA TCGTCAAAAGGAGTGCTTTG
Downstream 100 bases:
>100_bases TCATTCCTGCAATTGACCTTATCGATGGTCAGGTGGTGCGCCTGTTTCAGGGCGATTACGCCAAAAAGACCGAATTTTCA CTGGACCCCAAGAACCAGCT
Product: imidazole glycerol phosphate synthase subunit HisH
Products: NA
Alternate protein names: IGP synthase glutamine amidotransferase subunit; IGP synthase subunit hisH; ImGP synthase subunit hisH; IGPS subunit hisH [H]
Number of amino acids: Translated: 237; Mature: 236
Protein sequence:
>237_residues MSEEAIPNAETEKSAPELVIIDTGCANLSSVKFAFERLGAKVLVSPDSEVLRAAPRLVLPGVGTAAAAMDALRARALDKL IPTLRQPVLGVCLGMQLLMTRSHERGAKGEDIDCLDIIPGEIRELDASGHPLPHMGWNQLTVSNHPLFAGIEPGEWVYFV HSFCAPTSAATIASCEYGETFSAAIAKDNFMGVQFHPEKSATTGAKILRNFLAITLADLGLDDHFRAQSHAGTLEQS
Sequences:
>Translated_237_residues MSEEAIPNAETEKSAPELVIIDTGCANLSSVKFAFERLGAKVLVSPDSEVLRAAPRLVLPGVGTAAAAMDALRARALDKL IPTLRQPVLGVCLGMQLLMTRSHERGAKGEDIDCLDIIPGEIRELDASGHPLPHMGWNQLTVSNHPLFAGIEPGEWVYFV HSFCAPTSAATIASCEYGETFSAAIAKDNFMGVQFHPEKSATTGAKILRNFLAITLADLGLDDHFRAQSHAGTLEQS >Mature_236_residues SEEAIPNAETEKSAPELVIIDTGCANLSSVKFAFERLGAKVLVSPDSEVLRAAPRLVLPGVGTAAAAMDALRARALDKLI PTLRQPVLGVCLGMQLLMTRSHERGAKGEDIDCLDIIPGEIRELDASGHPLPHMGWNQLTVSNHPLFAGIEPGEWVYFVH SFCAPTSAATIASCEYGETFSAAIAKDNFMGVQFHPEKSATTGAKILRNFLAITLADLGLDDHFRAQSHAGTLEQS
Specific function: IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The hisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to hisF for the synthesis of IGP and AICAR [H]
COG id: COG0118
COG function: function code E; Glutamine amidotransferase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glutamine amidotransferase type-1 domain [H]
Homologues:
Organism=Escherichia coli, GI1788334, Length=199, Percent_Identity=53.2663316582915, Blast_Score=205, Evalue=2e-54, Organism=Saccharomyces cerevisiae, GI6319725, Length=213, Percent_Identity=35.2112676056338, Blast_Score=118, Evalue=1e-27,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006220 - InterPro: IPR017926 - InterPro: IPR000991 - InterPro: IPR010139 - InterPro: IPR016226 [H]
Pfam domain/function: PF00117 GATase [H]
EC number: 2.4.2.-
Molecular weight: Translated: 25361; Mature: 25230
Theoretical pI: Translated: 5.10; Mature: 5.10
Prosite motif: PS00442 GATASE_TYPE_I
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.1 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.1 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEEAIPNAETEKSAPELVIIDTGCANLSSVKFAFERLGAKVLVSPDSEVLRAAPRLVLP CCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECCCHHHHHHCCCEECC GVGTAAAAMDALRARALDKLIPTLRQPVLGVCLGMQLLMTRSHERGAKGEDIDCLDIIPG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC EIRELDASGHPLPHMGWNQLTVSNHPLFAGIEPGEWVYFVHSFCAPTSAATIASCEYGET HHHHCCCCCCCCCCCCCCEEEECCCCEEEECCCCCEEEEEHHHHCCCCCHHEECCCCCCH FSAAIAKDNFMGVQFHPEKSATTGAKILRNFLAITLADLGLDDHFRAQSHAGTLEQS HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC >Mature Secondary Structure SEEAIPNAETEKSAPELVIIDTGCANLSSVKFAFERLGAKVLVSPDSEVLRAAPRLVLP CCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCEEEECCCHHHHHHCCCEECC GVGTAAAAMDALRARALDKLIPTLRQPVLGVCLGMQLLMTRSHERGAKGEDIDCLDIIPG CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCC EIRELDASGHPLPHMGWNQLTVSNHPLFAGIEPGEWVYFVHSFCAPTSAATIASCEYGET HHHHCCCCCCCCCCCCCCEEEECCCCEEEECCCCCEEEEEHHHHCCCCCHHEECCCCCCH FSAAIAKDNFMGVQFHPEKSATTGAKILRNFLAITLADLGLDDHFRAQSHAGTLEQS HHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: Transferases; Glycosyltransferases; Pentosyltransferases [C]
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA