| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is hisB [H]
Identifier: 119775079
GI number: 119775079
Start: 2372250
End: 2373317
Strand: Direct
Name: hisB [H]
Synonym: Sama_1944
Alternate gene names: 119775079
Gene position: 2372250-2373317 (Clockwise)
Preceding gene: 119775078
Following gene: 119775080
Centisome position: 55.09
GC content: 55.06
Gene sequence:
>1068_bases ATGCCCCAGAAAATGCTTTTTATCGACCGCGATGGCACCCTGATTGAGGAGCCGGTAACAGATAAGCAGGTCGACAGTCT CAGCAAGCTGGTGTTTGAACCAACCGCCATTCCCGCGCTGCTGCGGCTGCAAAAAGCCGGTTACCGCCTGATTATGGTCA GTAATCAGGATGGCCTCGGCACCCCATCTTTCCCTCAGGAAGACTTTGACGCCCCCCACAACCTGATGATGCAGGTTTTT GAAAGTCAGGGCGTTAAGTTTGATGAGGTGCTGATTTGCCCGCACTTCAACGATGAAAACTGCAGCTGCCGGAAGCCCAA ACTCGGTCTGGTAAAATCCTTCCTGACCCAAGGTCTGGTGGATTTTACCGCCTCAGCAGTGATTGGCGATCGCGACACCG ATGTCGAACTTGGCAACGCCATGGGCATCAAGAGCTTTAAGTATCAGCGTGAAACCCTCGGCTGGAACGCCATTGCCGAT TCGCTGCTCGCCAAAGGCCGCTGCGCCACCGTTGTGCGCACGACCCGCGAAACCGACATTAGGGTCACGGTGGATTTAGA CACCCCGGGCAACAATCAAATCGACACCGGCATCGGCTTTTTTGACCATATGCTTGATCAAATCGCCACCCACGGTAATT TCAGCCTCAAGCTTAACGTCGATGGCGACCTTGAGATTGACGATCACCACAGTGTGGAAGACACAGCATTGGCCTTGGGT GATGCCCTGCGTCAGGCCCTTGGAGATAAGCGCGGCATCGGCCGTTTCGGCTTTGCCCTGCCGATGGATGAAGCCTCGGG CCAGTGTTTGATGGATATCTCAGGTCGGCCTTTTATCAAGTTTGAGGCGAGCTTTAGCCGCGATAAAGTGGGCGAAATGG CCACCGAAATGGTGCCGCACTTCTTTCGCTCCTTCGCCGATGGTCTGCGCTGCACCTTACACATCGGCTGCGATGGCGAT AACGATCACCACAAGGTAGAAGCCCTGTTCAAGGTGCTTGGCCGCACCCTACGCCAGGCCATTGCCATCGAAGGTGATGC CCTGCCATCGTCAAAAGGAGTGCTTTGA
Upstream 100 bases:
>100_bases GATGCCATTCGCATCAGCTATGCCAGCGAACAACAAACGGATTCCATTATCGAGGCCATCGGCCGTATCGACAGCAAATA ATCACAAGGACAGAGTACCC
Downstream 100 bases:
>100_bases TGAGTGAGGAGGCTATTCCCAACGCTGAGACCGAGAAATCGGCGCCCGAACTGGTCATCATCGACACCGGCTGCGCCAAT TTAAGCTCGGTGAAGTTTGC
Product: imidazole glycerol-phosphate dehydratase/histidinol phosphatase
Products: NA
Alternate protein names: Histidinol-phosphatase; Imidazoleglycerol-phosphate dehydratase; IGPD [H]
Number of amino acids: Translated: 355; Mature: 354
Protein sequence:
>355_residues MPQKMLFIDRDGTLIEEPVTDKQVDSLSKLVFEPTAIPALLRLQKAGYRLIMVSNQDGLGTPSFPQEDFDAPHNLMMQVF ESQGVKFDEVLICPHFNDENCSCRKPKLGLVKSFLTQGLVDFTASAVIGDRDTDVELGNAMGIKSFKYQRETLGWNAIAD SLLAKGRCATVVRTTRETDIRVTVDLDTPGNNQIDTGIGFFDHMLDQIATHGNFSLKLNVDGDLEIDDHHSVEDTALALG DALRQALGDKRGIGRFGFALPMDEASGQCLMDISGRPFIKFEASFSRDKVGEMATEMVPHFFRSFADGLRCTLHIGCDGD NDHHKVEALFKVLGRTLRQAIAIEGDALPSSKGVL
Sequences:
>Translated_355_residues MPQKMLFIDRDGTLIEEPVTDKQVDSLSKLVFEPTAIPALLRLQKAGYRLIMVSNQDGLGTPSFPQEDFDAPHNLMMQVF ESQGVKFDEVLICPHFNDENCSCRKPKLGLVKSFLTQGLVDFTASAVIGDRDTDVELGNAMGIKSFKYQRETLGWNAIAD SLLAKGRCATVVRTTRETDIRVTVDLDTPGNNQIDTGIGFFDHMLDQIATHGNFSLKLNVDGDLEIDDHHSVEDTALALG DALRQALGDKRGIGRFGFALPMDEASGQCLMDISGRPFIKFEASFSRDKVGEMATEMVPHFFRSFADGLRCTLHIGCDGD NDHHKVEALFKVLGRTLRQAIAIEGDALPSSKGVL >Mature_354_residues PQKMLFIDRDGTLIEEPVTDKQVDSLSKLVFEPTAIPALLRLQKAGYRLIMVSNQDGLGTPSFPQEDFDAPHNLMMQVFE SQGVKFDEVLICPHFNDENCSCRKPKLGLVKSFLTQGLVDFTASAVIGDRDTDVELGNAMGIKSFKYQRETLGWNAIADS LLAKGRCATVVRTTRETDIRVTVDLDTPGNNQIDTGIGFFDHMLDQIATHGNFSLKLNVDGDLEIDDHHSVEDTALALGD ALRQALGDKRGIGRFGFALPMDEASGQCLMDISGRPFIKFEASFSRDKVGEMATEMVPHFFRSFADGLRCTLHIGCDGDN DHHKVEALFKVLGRTLRQAIAIEGDALPSSKGVL
Specific function: Histidine biosynthesis; sixth step. Histidine biosynthesis; eighth step. [C]
COG id: COG0131
COG function: function code E; Imidazoleglycerol-phosphate dehydratase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: In the C-terminal section; belongs to the imidazoleglycerol-phosphate dehydratase family [H]
Homologues:
Organism=Escherichia coli, GI87082027, Length=355, Percent_Identity=62.2535211267606, Blast_Score=469, Evalue=1e-133, Organism=Escherichia coli, GI1786399, Length=145, Percent_Identity=28.2758620689655, Blast_Score=66, Evalue=3e-12, Organism=Saccharomyces cerevisiae, GI6324776, Length=165, Percent_Identity=47.2727272727273, Blast_Score=162, Evalue=5e-41,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR023214 - InterPro: IPR006549 - InterPro: IPR020566 - InterPro: IPR005954 - InterPro: IPR006543 - InterPro: IPR000807 - InterPro: IPR020565 - InterPro: IPR013954 - InterPro: IPR020568 [H]
Pfam domain/function: PF00475 IGPD; PF08645 PNK3P [H]
EC number: =3.1.3.15; =4.2.1.19 [H]
Molecular weight: Translated: 39081; Mature: 38950
Theoretical pI: Translated: 4.86; Mature: 4.86
Prosite motif: PS00954 IGP_DEHYDRATASE_1 ; PS00955 IGP_DEHYDRATASE_2 ; PS00307 LECTIN_LEGUME_BETA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 5.1 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPQKMLFIDRDGTLIEEPVTDKQVDSLSKLVFEPTAIPALLRLQKAGYRLIMVSNQDGLG CCCCEEEEECCCCEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEEEECCCCCC TPSFPQEDFDAPHNLMMQVFESQGVKFDEVLICPHFNDENCSCRKPKLGLVKSFLTQGLV CCCCCCHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH DFTASAVIGDRDTDVELGNAMGIKSFKYQRETLGWNAIADSLLAKGRCATVVRTTRETDI HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCEE RVTVDLDTPGNNQIDTGIGFFDHMLDQIATHGNFSLKLNVDGDLEIDDHHSVEDTALALG EEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCHHHHHHHHH DALRQALGDKRGIGRFGFALPMDEASGQCLMDISGRPFIKFEASFSRDKVGEMATEMVPH HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHH FFRSFADGLRCTLHIGCDGDNDHHKVEALFKVLGRTLRQAIAIEGDALPSSKGVL HHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC >Mature Secondary Structure PQKMLFIDRDGTLIEEPVTDKQVDSLSKLVFEPTAIPALLRLQKAGYRLIMVSNQDGLG CCCEEEEECCCCEECCCCCHHHHHHHHHHHHCCHHHHHHHHHHHCCEEEEEEECCCCCC TPSFPQEDFDAPHNLMMQVFESQGVKFDEVLICPHFNDENCSCRKPKLGLVKSFLTQGLV CCCCCCHHCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHHH DFTASAVIGDRDTDVELGNAMGIKSFKYQRETLGWNAIADSLLAKGRCATVVRTTRETDI HHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHCCHHHHHHHHHHCCCCEEEEEECCCCEE RVTVDLDTPGNNQIDTGIGFFDHMLDQIATHGNFSLKLNVDGDLEIDDHHSVEDTALALG EEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEECCCCCHHHHHHHHH DALRQALGDKRGIGRFGFALPMDEASGQCLMDISGRPFIKFEASFSRDKVGEMATEMVPH HHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHH FFRSFADGLRCTLHIGCDGDNDHHKVEALFKVLGRTLRQAIAIEGDALPSSKGVL HHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 12368813 [H]