Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775070

Identifier: 119775070

GI number: 119775070

Start: 2362640

End: 2363575

Strand: Reverse

Name: 119775070

Synonym: Sama_1935

Alternate gene names: NA

Gene position: 2363575-2362640 (Counterclockwise)

Preceding gene: 119775071

Following gene: 119775069

Centisome position: 54.89

GC content: 55.45

Gene sequence:

>936_bases
ATGACGAATGAGTTTCAAGAGCTGGAACTCGCCTTGCCTCATATCAGGCTGGCCGGGTGGCAACATGGTTCCACGGCGAG
TGACGGTGCCAAACCGGACTCGCAGGGGCATGGGCAATCCAAGCCACTGGTGCTGGCACTTCACGGTTGGCTTGATAACG
CCCAGAGTTTTGCGCCGCTCGCGGCCTCATTGAAGGATGTCAGACTGTTGGCCATTGACTGGCCGGGACATGGACGGTCA
GCCCACAGGCCAGGGGAGTATCCCCTGCACTGGATAGACTACCTTTATGATTTGCACGCACTGTTACAGTTTTTAATGGT
TCGCGGTGACAGGCCTGTGGCCATTATTGGTCATTCACTGGGCGGTATAGTCGCCAGCGCTTACGTAGCCGCCCACCCGG
ATGCCTGTAAAAAGCTGATCCTGATAGAAGCGCTTGGGCCGCTCAGTGAGAGGCCGGGCAAGAGTCAGAAGCGGCTGGTG
GATAGTTTTGCATCTCACACAGCCTTATCCGAAAAAAAGACCACAGGCGAGCAGGCAAAGGCTTATACCAGTCTGGATGC
CATAGTCGAGGCAAGACACAGATTGACCGGACTCAATAAAACGGCCTGTGAGTTGATTCTGGCACGTAATTTTGAATATC
GCAGTGGGGGCGACCACGCAGGCTGGTATAACAAAACTGACCCCCGACTCAAGCTCGATTCACCGCTCAGGCTCACACCG
GCTCACGCTGAGGCGTTTATCAGAGGTCTGGAAATGCCAACCCTGTTACTGATGGGAGAGCAGGGATTTGCTAAGCTGCA
CGAGGCGTTGGAGCATGCACGCCCCCTCTATCGGCAGCTGCAGGTGCACACTATCGCAGGCGATCATCATCTTCATATGT
CCGACCCGGAGACCACCGCCGATGCTATTCGTCACTTTCTGAGCACCTGCGGATAA

Upstream 100 bases:

>100_bases
CGGGAAATGCCGATACCGGAACACCGCCGGTGTCGGCATTTTTCACTGTAGGTCAGTGTTGGGATGAGAGAGCGGCAGTA
ATAACTAAGCGAGAGTTTTA

Downstream 100 bases:

>100_bases
GCCTTAAAAAGGGGCTGGGCTTTTAAGCGCAATTATGTGATGATTGTCAAAAATTTAAACGCCCGTATGATTTTCGTGCG
TAAGTAATAATAACAAGTTA

Product: alpha/beta fold family hydrolase

Products: NA

Alternate protein names: Hydrolase; Alpha/Beta Fold Family Hydrolase; Alpha/Beta Hydrolase Fold Protein; Hydrolase Alpha/Beta Fold Family; Alpha/Beta Hydrolase; Hydrolase Protein; Hydrolase/Acyltransferase; Lipase A; Lipase; Hydrolase Alpha/Beta Fold Family Protein; Beta-Ketoacyl Synthase; Alpha/Beta Fold Superfamily Hydrolase; Hydrolase Or Acytransferase; Alpha/Beta Hydrolase Family Protein; Lipase LipA; Epoxide Hydrolase; Alpha/Beta Superfamily Hydrolase; Alpha/Beta Fold Hydrolase Family Protein

Number of amino acids: Translated: 311; Mature: 310

Protein sequence:

>311_residues
MTNEFQELELALPHIRLAGWQHGSTASDGAKPDSQGHGQSKPLVLALHGWLDNAQSFAPLAASLKDVRLLAIDWPGHGRS
AHRPGEYPLHWIDYLYDLHALLQFLMVRGDRPVAIIGHSLGGIVASAYVAAHPDACKKLILIEALGPLSERPGKSQKRLV
DSFASHTALSEKKTTGEQAKAYTSLDAIVEARHRLTGLNKTACELILARNFEYRSGGDHAGWYNKTDPRLKLDSPLRLTP
AHAEAFIRGLEMPTLLLMGEQGFAKLHEALEHARPLYRQLQVHTIAGDHHLHMSDPETTADAIRHFLSTCG

Sequences:

>Translated_311_residues
MTNEFQELELALPHIRLAGWQHGSTASDGAKPDSQGHGQSKPLVLALHGWLDNAQSFAPLAASLKDVRLLAIDWPGHGRS
AHRPGEYPLHWIDYLYDLHALLQFLMVRGDRPVAIIGHSLGGIVASAYVAAHPDACKKLILIEALGPLSERPGKSQKRLV
DSFASHTALSEKKTTGEQAKAYTSLDAIVEARHRLTGLNKTACELILARNFEYRSGGDHAGWYNKTDPRLKLDSPLRLTP
AHAEAFIRGLEMPTLLLMGEQGFAKLHEALEHARPLYRQLQVHTIAGDHHLHMSDPETTADAIRHFLSTCG
>Mature_310_residues
TNEFQELELALPHIRLAGWQHGSTASDGAKPDSQGHGQSKPLVLALHGWLDNAQSFAPLAASLKDVRLLAIDWPGHGRSA
HRPGEYPLHWIDYLYDLHALLQFLMVRGDRPVAIIGHSLGGIVASAYVAAHPDACKKLILIEALGPLSERPGKSQKRLVD
SFASHTALSEKKTTGEQAKAYTSLDAIVEARHRLTGLNKTACELILARNFEYRSGGDHAGWYNKTDPRLKLDSPLRLTPA
HAEAFIRGLEMPTLLLMGEQGFAKLHEALEHARPLYRQLQVHTIAGDHHLHMSDPETTADAIRHFLSTCG

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI18777795, Length=318, Percent_Identity=26.4150943396226, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24667992, Length=320, Percent_Identity=25.3125, Blast_Score=94, Evalue=1e-19,
Organism=Drosophila melanogaster, GI24655874, Length=284, Percent_Identity=30.6338028169014, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21357291, Length=317, Percent_Identity=25.2365930599369, Blast_Score=93, Evalue=3e-19,
Organism=Drosophila melanogaster, GI24667999, Length=323, Percent_Identity=27.5541795665635, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI17137390, Length=301, Percent_Identity=26.578073089701, Blast_Score=89, Evalue=3e-18,
Organism=Drosophila melanogaster, GI21356937, Length=282, Percent_Identity=23.4042553191489, Blast_Score=78, Evalue=9e-15,
Organism=Drosophila melanogaster, GI24655886, Length=161, Percent_Identity=32.2981366459627, Blast_Score=73, Evalue=2e-13,
Organism=Drosophila melanogaster, GI21356953, Length=114, Percent_Identity=35.0877192982456, Blast_Score=67, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34235; Mature: 34104

Theoretical pI: Translated: 7.41; Mature: 7.41

Prosite motif: PS00120 LIPASE_SER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNEFQELELALPHIRLAGWQHGSTASDGAKPDSQGHGQSKPLVLALHGWLDNAQSFAPL
CCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
AASLKDVRLLAIDWPGHGRSAHRPGEYPLHWIDYLYDLHALLQFLMVRGDRPVAIIGHSL
HHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHH
GGIVASAYVAAHPDACKKLILIEALGPLSERPGKSQKRLVDSFASHTALSEKKTTGEQAK
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
AYTSLDAIVEARHRLTGLNKTACELILARNFEYRSGGDHAGWYNKTDPRLKLDSPLRLTP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCEECH
AHAEAFIRGLEMPTLLLMGEQGFAKLHEALEHARPLYRQLQVHTIAGDHHLHMSDPETTA
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEECCCEEECCCCCHHH
DAIRHFLSTCG
HHHHHHHHHCC
>Mature Secondary Structure 
TNEFQELELALPHIRLAGWQHGSTASDGAKPDSQGHGQSKPLVLALHGWLDNAQSFAPL
CCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHH
AASLKDVRLLAIDWPGHGRSAHRPGEYPLHWIDYLYDLHALLQFLMVRGDRPVAIIGHSL
HHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCEEEECCHH
GGIVASAYVAAHPDACKKLILIEALGPLSERPGKSQKRLVDSFASHTALSEKKTTGEQAK
HHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHH
AYTSLDAIVEARHRLTGLNKTACELILARNFEYRSGGDHAGWYNKTDPRLKLDSPLRLTP
HHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCEECH
AHAEAFIRGLEMPTLLLMGEQGFAKLHEALEHARPLYRQLQVHTIAGDHHLHMSDPETTA
HHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHEEEECCCEEECCCCCHHH
DAIRHFLSTCG
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA