| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is slt [H]
Identifier: 119775030
GI number: 119775030
Start: 2311492
End: 2313408
Strand: Direct
Name: slt [H]
Synonym: Sama_1895
Alternate gene names: 119775030
Gene position: 2311492-2313408 (Clockwise)
Preceding gene: 119775029
Following gene: 119775031
Centisome position: 53.68
GC content: 54.51
Gene sequence:
>1917_bases ATGCTGAAGCAGTTTTACGGCATTTGTCTCACATCACTCATCTTCATCAGCCCGCTGGTGTCTGCCGATATCAAGGATGA CCGGCAACAGTTTCTCAAGGCGGAAAAAGCCCTGCGGGAGGGTAATAAGGCCCAGTATGCCAAGTTGAGAAAAGGCCTGG ATGATTACCCCCTGGCCGTTTATCTCGACTTTGATGCCCAAATCGACAGTCTGGTGATGCTGCCGGGGAGTAAAGCCCAA ACGGCGATTCAGGCATTTCAGAATACGCCTTTTTATGGCAACGCCCGCTACCGTTACCTGCTCACCGCAGCCAAGGGGGC TCGCTGGGAAGATTTTCTGGCCATTAGCCCGGACGCGCCAAAAGATACCGCGCTCCAATGCCACTACTATCAGGCCTTAC TGGCCGTGGGTGACAAATCCCGAGCCAATGAGGGGGCCCGCCGCTTATGGCTAAACGGCAGCTCAATGCCGGATGCCTGC GATCCCTTGTTTACAAAATGGGCCAAAGCAGGCCATCGCAGTCAGGAGCTCATCTGGAGCCGTATGTTCCTCGCCTTTGA TGCCCGGGAAGCGTCACTCCTGAGCTACCTGGCCCAAAAGGTTACCAATTACCCCAAAGAAGCCCAAAAGCTGCTTGCCC TGTACAAAGATCCGAGAAACCTCAGGCACATGGACAGATACAAGGCCAAAGCGCCTGTCATGGCCGAAATGGTAGAGTTG GGACTCAAGGCGCTGGCACGCAAAGATTTAAAAGAAGCCGTGTCATTGCTGGGTAAATACGAAAAATCAGGCCGTTTCAC CAAGGTACAGGCACAAAGCCTGCACGCCTTTATGGTCCGCCGAGTGTTACTCAGACAAGAAGAGTCTCTGCTGAGCTATG CCGAAAAACACCTGCCACCACTCGCATCGGACGATCTGACAGAGCTGAGGCTTCGCTGGGCGATACGGGATGGTGACGAA AAAGCCATAAAGCAGTTTCTGCCGCTGTTAAGCCGTGAAACGGCTGCCAAGGAACGCTGGCAATATTGGCGTCTCAGGTA CGAGACCAGCGCTGGCGAGAGTGACACCCTCTCGGCGCAGCTGGCTGCCGACAGAAGTTTTTACGGATTTCATGCTGCGC AATCTCAGGGCATGAGCCCAGCGCTCAATGAGGTTAAAGCGAGTGATGTATCCGCTTCCTCTGATGCCAATCTCACGCAG GGAGCAGATCCCGCTCTGGCCAGGGTAAAAGAGCTCCTGGTCTTGGAGCGGCCACGTCAGGCTCGTGTGGAATGGCTAGG ACTGCTTGGTCGGGAAGATGCTGCCGGCAAGGCAAAATATGGCAACTGGGCGCTGGAAAATGGGCTGTTCGCCCTCTCCG TTGATGCGTCTATTCAAGGCAAATTCTGGGATGATTTGGGCATGCGCTTCCCTCCCGCCGAAGAGCAAAGCTTTGCCAGA GCCGCTAAACGCCATAAGCTCAATGCGGAAGAACTGAGAGCCATCGCCCGCCGTGAAAGCGCGTTTAACCCCATAGCGCA GTCCGCTGTGGGTGCCCGGGGGTTGATGCAGTTGATGCCAGCCACAGCGAAACAAACCGCCAAAAAACAAGGCATAAAGT ACAGCGGCGAGGGATCGCTGTACGAGCCAGCACTGAATATTCAGCTGGGCAGTGCCTATTACGCAAGTTTACTCGAGCGG TATAACAATAATCGGGTACTGGCAACGGCGGCCTATAACGCCGGACCATCGAGGGTGAACGCCTGGCTTGCTCGCAGTGA GGGTAAACTGGATGTGATGGCCTTCATCGAATCCATCCCATTCACCGAGACCCGGGAGTACGTGCAGGCCGTATTCAGTT ATCGATTAATTTACGAGCATCGAAAAGGCAATACCACGCCCCTTTTCAGCGAGGCTGAGCTGAAATTCAAATACTGA
Upstream 100 bases:
>100_bases GAGGACGACGATACTGTAGCCGACACTCTGGCCGTCAATGGTTCAACGCCAGTGCCACATCTGACTAACCAGAGACAGTA ATCACGGAGGAACTTGCACC
Downstream 100 bases:
>100_bases GTCGACCCAGTAATGCGTCAGGGGGCAAGTCCCCCTGTTACGCCTCGACTTTACCGGCCCCTGTGCAAGTCACCTTGTGC CAGTCCCCTGTAACCAGTCC
Product: soluble lytic murein transglycosylase
Products: 1,6-Anhydrobond [C]
Alternate protein names: Exomuramidase; Peptidoglycan lytic exotransglycosylase; Slt70 [H]
Number of amino acids: Translated: 638; Mature: 638
Protein sequence:
>638_residues MLKQFYGICLTSLIFISPLVSADIKDDRQQFLKAEKALREGNKAQYAKLRKGLDDYPLAVYLDFDAQIDSLVMLPGSKAQ TAIQAFQNTPFYGNARYRYLLTAAKGARWEDFLAISPDAPKDTALQCHYYQALLAVGDKSRANEGARRLWLNGSSMPDAC DPLFTKWAKAGHRSQELIWSRMFLAFDAREASLLSYLAQKVTNYPKEAQKLLALYKDPRNLRHMDRYKAKAPVMAEMVEL GLKALARKDLKEAVSLLGKYEKSGRFTKVQAQSLHAFMVRRVLLRQEESLLSYAEKHLPPLASDDLTELRLRWAIRDGDE KAIKQFLPLLSRETAAKERWQYWRLRYETSAGESDTLSAQLAADRSFYGFHAAQSQGMSPALNEVKASDVSASSDANLTQ GADPALARVKELLVLERPRQARVEWLGLLGREDAAGKAKYGNWALENGLFALSVDASIQGKFWDDLGMRFPPAEEQSFAR AAKRHKLNAEELRAIARRESAFNPIAQSAVGARGLMQLMPATAKQTAKKQGIKYSGEGSLYEPALNIQLGSAYYASLLER YNNNRVLATAAYNAGPSRVNAWLARSEGKLDVMAFIESIPFTETREYVQAVFSYRLIYEHRKGNTTPLFSEAELKFKY
Sequences:
>Translated_638_residues MLKQFYGICLTSLIFISPLVSADIKDDRQQFLKAEKALREGNKAQYAKLRKGLDDYPLAVYLDFDAQIDSLVMLPGSKAQ TAIQAFQNTPFYGNARYRYLLTAAKGARWEDFLAISPDAPKDTALQCHYYQALLAVGDKSRANEGARRLWLNGSSMPDAC DPLFTKWAKAGHRSQELIWSRMFLAFDAREASLLSYLAQKVTNYPKEAQKLLALYKDPRNLRHMDRYKAKAPVMAEMVEL GLKALARKDLKEAVSLLGKYEKSGRFTKVQAQSLHAFMVRRVLLRQEESLLSYAEKHLPPLASDDLTELRLRWAIRDGDE KAIKQFLPLLSRETAAKERWQYWRLRYETSAGESDTLSAQLAADRSFYGFHAAQSQGMSPALNEVKASDVSASSDANLTQ GADPALARVKELLVLERPRQARVEWLGLLGREDAAGKAKYGNWALENGLFALSVDASIQGKFWDDLGMRFPPAEEQSFAR AAKRHKLNAEELRAIARRESAFNPIAQSAVGARGLMQLMPATAKQTAKKQGIKYSGEGSLYEPALNIQLGSAYYASLLER YNNNRVLATAAYNAGPSRVNAWLARSEGKLDVMAFIESIPFTETREYVQAVFSYRLIYEHRKGNTTPLFSEAELKFKY >Mature_638_residues MLKQFYGICLTSLIFISPLVSADIKDDRQQFLKAEKALREGNKAQYAKLRKGLDDYPLAVYLDFDAQIDSLVMLPGSKAQ TAIQAFQNTPFYGNARYRYLLTAAKGARWEDFLAISPDAPKDTALQCHYYQALLAVGDKSRANEGARRLWLNGSSMPDAC DPLFTKWAKAGHRSQELIWSRMFLAFDAREASLLSYLAQKVTNYPKEAQKLLALYKDPRNLRHMDRYKAKAPVMAEMVEL GLKALARKDLKEAVSLLGKYEKSGRFTKVQAQSLHAFMVRRVLLRQEESLLSYAEKHLPPLASDDLTELRLRWAIRDGDE KAIKQFLPLLSRETAAKERWQYWRLRYETSAGESDTLSAQLAADRSFYGFHAAQSQGMSPALNEVKASDVSASSDANLTQ GADPALARVKELLVLERPRQARVEWLGLLGREDAAGKAKYGNWALENGLFALSVDASIQGKFWDDLGMRFPPAEEQSFAR AAKRHKLNAEELRAIARRESAFNPIAQSAVGARGLMQLMPATAKQTAKKQGIKYSGEGSLYEPALNIQLGSAYYASLLER YNNNRVLATAAYNAGPSRVNAWLARSEGKLDVMAFIESIPFTETREYVQAVFSYRLIYEHRKGNTTPLFSEAELKFKY
Specific function: Murein-degrading enzyme. Catalyzes the cleavage of the glycosidic bonds between N-acetylmuramic acid and N- acetylglucosamine residues in peptidoglycan. May play a role in recycling of muropeptides during cell elongation and/or cell division [H]
COG id: COG0741
COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
Gene ontology:
Cell location: Periplasm. Note=Tightly associated with the murein sacculus (By similarity) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the transglycosylase slt family [H]
Homologues:
Organism=Escherichia coli, GI87082441, Length=641, Percent_Identity=32.6053042121685, Blast_Score=326, Evalue=3e-90,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016026 - InterPro: IPR008258 - InterPro: IPR012289 - InterPro: IPR008939 - InterPro: IPR000189 [H]
Pfam domain/function: PF01464 SLT [H]
EC number: 3.2.1.- [C]
Molecular weight: Translated: 71790; Mature: 71790
Theoretical pI: Translated: 9.82; Mature: 9.82
Prosite motif: PS00922 TRANSGLYCOSYLASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKQFYGICLTSLIFISPLVSADIKDDRQQFLKAEKALREGNKAQYAKLRKGLDDYPLAV CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEE YLDFDAQIDSLVMLPGSKAQTAIQAFQNTPFYGNARYRYLLTAAKGARWEDFLAISPDAP EEECCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCC KDTALQCHYYQALLAVGDKSRANEGARRLWLNGSSMPDACDPLFTKWAKAGHRSQELIWS CCCHHHHHHHHHHHHHCCCHHCCCCHHEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHH RMFLAFDAREASLLSYLAQKVTNYPKEAQKLLALYKDPRNLRHMDRYKAKAPVMAEMVEL HHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHH GLKALARKDLKEAVSLLGKYEKSGRFTKVQAQSLHAFMVRRVLLRQEESLLSYAEKHLPP HHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LASDDLTELRLRWAIRDGDEKAIKQFLPLLSRETAAKERWQYWRLRYETSAGESDTLSAQ CCCCCHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHH LAADRSFYGFHAAQSQGMSPALNEVKASDVSASSDANLTQGADPALARVKELLVLERPRQ HHCCCCHHCCHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHH ARVEWLGLLGREDAAGKAKYGNWALENGLFALSVDASIQGKFWDDLGMRFPPAEEQSFAR HHHHHHHHHCCCCCCCCCCCCCEEHHCCEEEEEECCCCCCCCHHHCCCCCCCCCHHHHHH AAKRHKLNAEELRAIARRESAFNPIAQSAVGARGLMQLMPATAKQTAKKQGIKYSGEGSL HHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCE YEPALNIQLGSAYYASLLERYNNNRVLATAAYNAGPSRVNAWLARSEGKLDVMAFIESIP ECCEEEEEECHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHCC FTETREYVQAVFSYRLIYEHRKGNTTPLFSEAELKFKY CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECC >Mature Secondary Structure MLKQFYGICLTSLIFISPLVSADIKDDRQQFLKAEKALREGNKAQYAKLRKGLDDYPLAV CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCEEE YLDFDAQIDSLVMLPGSKAQTAIQAFQNTPFYGNARYRYLLTAAKGARWEDFLAISPDAP EEECCCCCCCEEECCCCHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEECCCCC KDTALQCHYYQALLAVGDKSRANEGARRLWLNGSSMPDACDPLFTKWAKAGHRSQELIWS CCCHHHHHHHHHHHHHCCCHHCCCCHHEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHH RMFLAFDAREASLLSYLAQKVTNYPKEAQKLLALYKDPRNLRHMDRYKAKAPVMAEMVEL HHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCHHHHHHHHHHHCCCHHHHHHHH GLKALARKDLKEAVSLLGKYEKSGRFTKVQAQSLHAFMVRRVLLRQEESLLSYAEKHLPP HHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC LASDDLTELRLRWAIRDGDEKAIKQFLPLLSRETAAKERWQYWRLRYETSAGESDTLSAQ CCCCCHHHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCHHH LAADRSFYGFHAAQSQGMSPALNEVKASDVSASSDANLTQGADPALARVKELLVLERPRQ HHCCCCHHCCHHHHCCCCCHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHH ARVEWLGLLGREDAAGKAKYGNWALENGLFALSVDASIQGKFWDDLGMRFPPAEEQSFAR HHHHHHHHHCCCCCCCCCCCCCEEHHCCEEEEEECCCCCCCCHHHCCCCCCCCCHHHHHH AAKRHKLNAEELRAIARRESAFNPIAQSAVGARGLMQLMPATAKQTAKKQGIKYSGEGSL HHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCE YEPALNIQLGSAYYASLLERYNNNRVLATAAYNAGPSRVNAWLARSEGKLDVMAFIESIP ECCEEEEEECHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHCCCCCCHHHHHHHHCC FTETREYVQAVFSYRLIYEHRKGNTTPLFSEAELKFKY CHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Muramic Acid Residue (N-Acetylmuramic Acid And N-Acetylglucosamine Residues) [C]
Specific reaction: Cleavage Of The Beta-1,4-Glycosidic Bond Between N-Acetylmuramic Acid And N-Acetylglucosamine Residues, Thereby Conserving The Energy In A Newly Synthesized 1,6-Anhydrobond In The Muramic Acid Residue. [C]
General reaction: Cleavage Of The Beta-1,4-Glycosidic Bond [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]