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The map label for this gene is yhjK [H]

Identifier: 119775031

GI number: 119775031

Start: 2313636

End: 2314424

Strand: Direct

Name: yhjK [H]

Synonym: Sama_1896

Alternate gene names: 119775031

Gene position: 2313636-2314424 (Clockwise)

Preceding gene: 119775030

Following gene: 119775032

Centisome position: 53.73

GC content: 54.25

Gene sequence:

>789_bases
ATGACCTCATTCTCCGCCCCATGTCCCCGCCCTATTCTGATGGGCTGTGAATACCAACCGTTAATTTGTCTGGCCAGCGG
TAACACTGTCGCCTACGAAGCCCTATCACGCTTTTACAGTAGCGACGGCCAGGCCATTGCCCCGAACAGGATATTTGAAG
TGCTGCACGAGCGTCCGCAGGCGCTGGCCGAGCTTGAACTGGCAGCAAAAACCTTTCAGCTGCAGCACGCGCCAAAAGGT
ATGCCACTGTATCTCAATCTGGACCCACACAGCTTGGCCGCCCAAAGCCCAGTGAGCACTGCGCTGTCCGCCTTACTGAG
TCAACCCCAAAAACCGCACACGCTGGTTATTGAGCTGATTGAAAATACCTGTATTAACGATGCCTTGATGGCCTCACAGC
TACTGAATTCTCTCCAGAGCGCAGGGATGCAGGTCGCGCTGGATGATGTCGGGGCCCCCCACGCAATGTTATCCCTTGAG
TTGCTATCCCGCGTTGATTGGATTAAGTTCGACCGCCACTGGCTGAGCCGGTTGGACGTGGCAACGGATGCCAATTTGCT
TGATTCGCTGGTGTCCTATGCCAAAGTCACCGCCAAGGGGACAGTACTGGAGGGGATAGAAACCCAGGCTCAATTGCAGC
GCGCCGCTACGCTGGGGATCAACCTGGCGCAGGGATTTCTCTTTCAAGACAGGTTCTTACAACCTGATGACAAGTCAGTT
ATTTCGGCGTCGATTCTGCGAGCATTTGATGACTGTAACGCTGGATCACTCATCGAAAATTGCGCATAG

Upstream 100 bases:

>100_bases
ACGGCATACGGCGCACAATAGACGAATAAAGGTCACAATGGGGTTGCAAAATCGAGGTTAATGAGATTTATTTGCATTAA
TCTCATTCCCGGTGTGTACC

Downstream 100 bases:

>100_bases
TAAGGTTTTGAGTTCCCCCTGAGGATGAAAGGATGCAGGAAAACACCGCAGCCCAAAATGCCACCGAACTGGAAAATCTG
ATTGCCCAATTACAGCGGGT

Product: putative diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 262; Mature: 261

Protein sequence:

>262_residues
MTSFSAPCPRPILMGCEYQPLICLASGNTVAYEALSRFYSSDGQAIAPNRIFEVLHERPQALAELELAAKTFQLQHAPKG
MPLYLNLDPHSLAAQSPVSTALSALLSQPQKPHTLVIELIENTCINDALMASQLLNSLQSAGMQVALDDVGAPHAMLSLE
LLSRVDWIKFDRHWLSRLDVATDANLLDSLVSYAKVTAKGTVLEGIETQAQLQRAATLGINLAQGFLFQDRFLQPDDKSV
ISASILRAFDDCNAGSLIENCA

Sequences:

>Translated_262_residues
MTSFSAPCPRPILMGCEYQPLICLASGNTVAYEALSRFYSSDGQAIAPNRIFEVLHERPQALAELELAAKTFQLQHAPKG
MPLYLNLDPHSLAAQSPVSTALSALLSQPQKPHTLVIELIENTCINDALMASQLLNSLQSAGMQVALDDVGAPHAMLSLE
LLSRVDWIKFDRHWLSRLDVATDANLLDSLVSYAKVTAKGTVLEGIETQAQLQRAATLGINLAQGFLFQDRFLQPDDKSV
ISASILRAFDDCNAGSLIENCA
>Mature_261_residues
TSFSAPCPRPILMGCEYQPLICLASGNTVAYEALSRFYSSDGQAIAPNRIFEVLHERPQALAELELAAKTFQLQHAPKGM
PLYLNLDPHSLAAQSPVSTALSALLSQPQKPHTLVIELIENTCINDALMASQLLNSLQSAGMQVALDDVGAPHAMLSLEL
LSRVDWIKFDRHWLSRLDVATDANLLDSLVSYAKVTAKGTVLEGIETQAQLQRAATLGINLAQGFLFQDRFLQPDDKSVI
SASILRAFDDCNAGSLIENCA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HAMP domain [H]

Homologues:

Organism=Escherichia coli, GI226510982, Length=227, Percent_Identity=29.0748898678414, Blast_Score=75, Evalue=6e-15,
Organism=Escherichia coli, GI1788502, Length=218, Percent_Identity=27.5229357798165, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI87081743, Length=226, Percent_Identity=26.9911504424779, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI87081845, Length=219, Percent_Identity=26.4840182648402, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003660 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF00672 HAMP [H]

EC number: NA

Molecular weight: Translated: 28449; Mature: 28318

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50883 EAL

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSFSAPCPRPILMGCEYQPLICLASGNTVAYEALSRFYSSDGQAIAPNRIFEVLHERPQ
CCCCCCCCCCHHEECCCCCCEEEEECCCCHHHHHHHHHHCCCCCEECHHHHHHHHHHHHH
ALAELELAAKTFQLQHAPKGMPLYLNLDPHSLAAQSPVSTALSALLSQPQKPHTLVIELI
HHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHH
ENTCINDALMASQLLNSLQSAGMQVALDDVGAPHAMLSLELLSRVDWIKFDRHWLSRLDV
HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATDANLLDSLVSYAKVTAKGTVLEGIETQAQLQRAATLGINLAQGFLFQDRFLQPDDKSV
HCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
ISASILRAFDDCNAGSLIENCA
HHHHHHHHHHCCCCCCHHHHCC
>Mature Secondary Structure 
TSFSAPCPRPILMGCEYQPLICLASGNTVAYEALSRFYSSDGQAIAPNRIFEVLHERPQ
CCCCCCCCCHHEECCCCCCEEEEECCCCHHHHHHHHHHCCCCCEECHHHHHHHHHHHHH
ALAELELAAKTFQLQHAPKGMPLYLNLDPHSLAAQSPVSTALSALLSQPQKPHTLVIELI
HHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHH
ENTCINDALMASQLLNSLQSAGMQVALDDVGAPHAMLSLELLSRVDWIKFDRHWLSRLDV
HHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATDANLLDSLVSYAKVTAKGTVLEGIETQAQLQRAATLGINLAQGFLFQDRFLQPDDKSV
HCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHH
ISASILRAFDDCNAGSLIENCA
HHHHHHHHHHCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 10493123 [H]