| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775010
Identifier: 119775010
GI number: 119775010
Start: 2288636
End: 2291083
Strand: Direct
Name: 119775010
Synonym: Sama_1875
Alternate gene names: NA
Gene position: 2288636-2291083 (Clockwise)
Preceding gene: 119775009
Following gene: 119775011
Centisome position: 53.15
GC content: 52.04
Gene sequence:
>2448_bases ATGAAACTCAATAAATTTACTGTTGCAATACTTGGCATGCTGAGTGCGGGCTCCGCACTGGCCGCTGGCCCACTGCTCAC GTCGGATGACACCAATCCCAAGCCCTATGTCTGGGACACGTCAAAAGGGTCGATTCCCGTTTATGTCGATGGCGGCGCCG CGTTTACCTACGATTACGATGGCAGCGTGTTTTTGTCTATCGATCGCGCCAGAGAGATTACCCAATTTGCCTTTGATCAG TGGAACAACGTAGAAACATCCACGTTCCGGGCTGATATTGCAGGCACAATTCAGGACAAAACCGGCATCGCCGATGTAAC AGGTGCCAATGCCGCTGAAATCTATACCAAGCAAAATGGTTATGGCTTCTGGGTACTGTATGACACAGACGGCAGTATCC TCGAAGACTTTTTCGGGGTACCGAAAAGTGCCGTACTGGGTATCGCCTTCCCAGAAATTGCCGATGAAAACAACGTGATT ATCGAAGCCACCGCGGTACTTAACGGTTGGAACGTCTACGTTAACGATACCGAAGGCAACCAGGTAGCCGGTGTGTTTAC CCATGAATTTGGCCATGCGATTAACCTGTCACACTCCCAGACCAATGGCCAATTGGGTTACATCAGCAACACCTTTGAGC CTCTCTACCCCGGCGTTGCCGGTTGCGGTGTAGAGCCGATACACGCCTATAACTGGCCGGATTGGTATGCCCCAACCAAT CCTGCAGATCCCGAGATCATTGAAACCATGTTCCCCTTTATCAGCCACAACGGCGCTGGCGGAACAGCCCAAAGCACGGT CAATGTGCTGGATGACAAAGTCTCAATTTCCAATCTCTATCCAACCGATGCCTACAAAACCGGCTTTGGCGCAATCGAAG GCAAACTTCGTCTCAAGGATGGCCAGACCGAATACAGTGGCGTCAATATCATTGCCCGTAACCTCAGCGATCCGCTGATG GATGCGGTGTCCGCTCAGTCGGGTTATCTGACTCAGGGGAAGGTGGGCCCCGATGGCTATTTCAAAATCAACGGCCTGAC TCCTGGACAAAGCTATGTGCTTTACACCGAAGAGATCCAGGTTGGCGGATATCCAACCCGTCAGATGCCCATCGTCTCGG TGGCCGAATACTGGAATGAGAATGAGGGAAGCGATCCAGTCACTGATAATCAGTGTGATTTCACCCCGATTGTTGCCGAA GCCGGCAAAACCAAGCAGGCCGATCTCACCTTTAACGGCTATGACGACGGCATCAACTTCCGCCCCATCGTCAACGCATT CCTGACGGATCTTGCCAAAAATGGCCGCTCTTCCATGGGTACCATCATGGGGTATGGCTTTACCTGGAATGAGACCAAGG GCTTTGAAATGCTGCCCGATTATGTCACGGCTGAGACAGGTCGCATGAACCGCAACGGCAGCAAAATTCTTGTGAATGCA GATCAGGATCGCAACGGCGTCAGCGCCCCGGCAATCTGGTCTGATTCCAAAGGCGTGATGCCTCTGGGCGACTTCACCGG TAACAGCTGTGGCGGTGGCACGCAACATGGTACCGAAGCGGCTTCCGCGTGGGATATTGACGACGCCGGTAATACGGTTG TGGGCTTGGCTTACAAGGATGTCGACGGCAATGGCATGTGCTACGAGTACGACAAAGGCGAGCTGGTTCCTTTCATCTGG ACACCGAAAGCTGGCATGCATGAGCTGGACACCCAGGATGTTGACTGGAACATCAACTCCTGGGTACGAGCCCATGCCAT TTCAGGTAATGGCGAAGTGGCTCTGGGATCACTCGATGGCTGGGAAGCGGTCGCTTGGGTAAATGAAGGGAAAATGATCA ACCTTTACCAAAAGGCCGGTGCAACTGAAGCGAACGCCGCATCTTACGATGGCAAAACCATCGCTCTGGCGACTGAAGCA GGCAATGTACTGCTTTGGGATCACAGCAAACCCGACAGCAATGCCTTCACCGATATTGGTGGTCTGAAATGGTGTGAAGA TGTGCCCTTTGTACTCTGGGGTCAGAATGCCTGCGACGAAATGGGTGCTGAATGGGTTCACAGTATTTTTGGTGAATTCG CAGGTTTGATCCCATTCGATATGAGTGACAACGGCGATGTCATCATAGGTCGCGCAGGTGACTTCTGGGCGGGCTTTGTT GGCGCTATCTACATCAAAGAGCTCGGCTGGATGACGCTGGATAACTTCTTCGCCAAACAGGGCGTGATGGAAGCGCTCAA CTCCTCAATGAATAACCCACTGTCCATCAGCGCTTCTGGCAGCAAAATGGTGGGGGGTATCGCTGGTGCCATGATCTCAT ACCATGTTGATATGACAGAGGTTTATGTCTGTGAAAACGGTAACTCAATCAAGACAGGCTTCCCCAATGGTCTGATAAAC AAAGTGAAATCCGGTGCTCAGTTCGGTCGCTGTGAACACTTGAATTAA
Upstream 100 bases:
>100_bases CCATGCTGAAAACGACCGGTGCCTTTAGTGCGACAGACTTTATGAGCCTGGTTGGAAAAGCGGTTTCAGAGCAATGGATC AGCAATGGGAAGATGAAATA
Downstream 100 bases:
>100_bases TAGCAGGTGTGGAGAGGCGCTAATGCAGGCGCTCTCCTTTTCACAAGACTTAAATCCAGAGGGCCATGTCAGTTGGCACT GAACATGGCCAGACATTTCA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 815; Mature: 815
Protein sequence:
>815_residues MKLNKFTVAILGMLSAGSALAAGPLLTSDDTNPKPYVWDTSKGSIPVYVDGGAAFTYDYDGSVFLSIDRAREITQFAFDQ WNNVETSTFRADIAGTIQDKTGIADVTGANAAEIYTKQNGYGFWVLYDTDGSILEDFFGVPKSAVLGIAFPEIADENNVI IEATAVLNGWNVYVNDTEGNQVAGVFTHEFGHAINLSHSQTNGQLGYISNTFEPLYPGVAGCGVEPIHAYNWPDWYAPTN PADPEIIETMFPFISHNGAGGTAQSTVNVLDDKVSISNLYPTDAYKTGFGAIEGKLRLKDGQTEYSGVNIIARNLSDPLM DAVSAQSGYLTQGKVGPDGYFKINGLTPGQSYVLYTEEIQVGGYPTRQMPIVSVAEYWNENEGSDPVTDNQCDFTPIVAE AGKTKQADLTFNGYDDGINFRPIVNAFLTDLAKNGRSSMGTIMGYGFTWNETKGFEMLPDYVTAETGRMNRNGSKILVNA DQDRNGVSAPAIWSDSKGVMPLGDFTGNSCGGGTQHGTEAASAWDIDDAGNTVVGLAYKDVDGNGMCYEYDKGELVPFIW TPKAGMHELDTQDVDWNINSWVRAHAISGNGEVALGSLDGWEAVAWVNEGKMINLYQKAGATEANAASYDGKTIALATEA GNVLLWDHSKPDSNAFTDIGGLKWCEDVPFVLWGQNACDEMGAEWVHSIFGEFAGLIPFDMSDNGDVIIGRAGDFWAGFV GAIYIKELGWMTLDNFFAKQGVMEALNSSMNNPLSISASGSKMVGGIAGAMISYHVDMTEVYVCENGNSIKTGFPNGLIN KVKSGAQFGRCEHLN
Sequences:
>Translated_815_residues MKLNKFTVAILGMLSAGSALAAGPLLTSDDTNPKPYVWDTSKGSIPVYVDGGAAFTYDYDGSVFLSIDRAREITQFAFDQ WNNVETSTFRADIAGTIQDKTGIADVTGANAAEIYTKQNGYGFWVLYDTDGSILEDFFGVPKSAVLGIAFPEIADENNVI IEATAVLNGWNVYVNDTEGNQVAGVFTHEFGHAINLSHSQTNGQLGYISNTFEPLYPGVAGCGVEPIHAYNWPDWYAPTN PADPEIIETMFPFISHNGAGGTAQSTVNVLDDKVSISNLYPTDAYKTGFGAIEGKLRLKDGQTEYSGVNIIARNLSDPLM DAVSAQSGYLTQGKVGPDGYFKINGLTPGQSYVLYTEEIQVGGYPTRQMPIVSVAEYWNENEGSDPVTDNQCDFTPIVAE AGKTKQADLTFNGYDDGINFRPIVNAFLTDLAKNGRSSMGTIMGYGFTWNETKGFEMLPDYVTAETGRMNRNGSKILVNA DQDRNGVSAPAIWSDSKGVMPLGDFTGNSCGGGTQHGTEAASAWDIDDAGNTVVGLAYKDVDGNGMCYEYDKGELVPFIW TPKAGMHELDTQDVDWNINSWVRAHAISGNGEVALGSLDGWEAVAWVNEGKMINLYQKAGATEANAASYDGKTIALATEA GNVLLWDHSKPDSNAFTDIGGLKWCEDVPFVLWGQNACDEMGAEWVHSIFGEFAGLIPFDMSDNGDVIIGRAGDFWAGFV GAIYIKELGWMTLDNFFAKQGVMEALNSSMNNPLSISASGSKMVGGIAGAMISYHVDMTEVYVCENGNSIKTGFPNGLIN KVKSGAQFGRCEHLN >Mature_815_residues MKLNKFTVAILGMLSAGSALAAGPLLTSDDTNPKPYVWDTSKGSIPVYVDGGAAFTYDYDGSVFLSIDRAREITQFAFDQ WNNVETSTFRADIAGTIQDKTGIADVTGANAAEIYTKQNGYGFWVLYDTDGSILEDFFGVPKSAVLGIAFPEIADENNVI IEATAVLNGWNVYVNDTEGNQVAGVFTHEFGHAINLSHSQTNGQLGYISNTFEPLYPGVAGCGVEPIHAYNWPDWYAPTN PADPEIIETMFPFISHNGAGGTAQSTVNVLDDKVSISNLYPTDAYKTGFGAIEGKLRLKDGQTEYSGVNIIARNLSDPLM DAVSAQSGYLTQGKVGPDGYFKINGLTPGQSYVLYTEEIQVGGYPTRQMPIVSVAEYWNENEGSDPVTDNQCDFTPIVAE AGKTKQADLTFNGYDDGINFRPIVNAFLTDLAKNGRSSMGTIMGYGFTWNETKGFEMLPDYVTAETGRMNRNGSKILVNA DQDRNGVSAPAIWSDSKGVMPLGDFTGNSCGGGTQHGTEAASAWDIDDAGNTVVGLAYKDVDGNGMCYEYDKGELVPFIW TPKAGMHELDTQDVDWNINSWVRAHAISGNGEVALGSLDGWEAVAWVNEGKMINLYQKAGATEANAASYDGKTIALATEA GNVLLWDHSKPDSNAFTDIGGLKWCEDVPFVLWGQNACDEMGAEWVHSIFGEFAGLIPFDMSDNGDVIIGRAGDFWAGFV GAIYIKELGWMTLDNFFAKQGVMEALNSSMNNPLSISASGSKMVGGIAGAMISYHVDMTEVYVCENGNSIKTGFPNGLIN KVKSGAQFGRCEHLN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 87763; Mature: 87763
Theoretical pI: Translated: 4.14; Mature: 4.14
Prosite motif: PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLNKFTVAILGMLSAGSALAAGPLLTSDDTNPKPYVWDTSKGSIPVYVDGGAAFTYDYD CCCCCEEEEEHHHHCCCCCHHCCCEEECCCCCCCCEEEECCCCCEEEEECCCEEEEEECC GSVFLSIDRAREITQFAFDQWNNVETSTFRADIAGTIQDKTGIADVTGANAAEIYTKQNG CEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCC YGFWVLYDTDGSILEDFFGVPKSAVLGIAFPEIADENNVIIEATAVLNGWNVYVNDTEGN EEEEEEECCCCHHHHHHHCCCCHHEEEEECCCCCCCCCEEEEEEEEEECCEEEEECCCCC QVAGVFTHEFGHAINLSHSQTNGQLGYISNTFEPLYPGVAGCGVEPIHAYNWPDWYAPTN EEEEEEEECCCCEEECCCCCCCCEEEEECCCCCHHCCCHHCCCCCCCCCCCCCCCCCCCC PADPEIIETMFPFISHNGAGGTAQSTVNVLDDKVSISNLYPTDAYKTGFGAIEGKLRLKD CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEEEEEC GQTEYSGVNIIARNLSDPLMDAVSAQSGYLTQGKVGPDGYFKINGLTPGQSYVLYTEEIQ CCCCCCCEEEEEECCCHHHHHHHHCCCCCEECCCCCCCCEEEEECCCCCCEEEEEEEEEE VGGYPTRQMPIVSVAEYWNENEGSDPVTDNQCDFTPIVAEAGKTKQADLTFNGYDDGINF ECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCC RPIVNAFLTDLAKNGRSSMGTIMGYGFTWNETKGFEMLPDYVTAETGRMNRNGSKILVNA HHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCHHCCCCCCCCCCCCEEEEEC DQDRNGVSAPAIWSDSKGVMPLGDFTGNSCGGGTQHGTEAASAWDIDDAGNTVVGLAYKD CCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE VDGNGMCYEYDKGELVPFIWTPKAGMHELDTQDVDWNINSWVRAHAISGNGEVALGSLDG CCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCC WEAVAWVNEGKMINLYQKAGATEANAASYDGKTIALATEAGNVLLWDHSKPDSNAFTDIG CEEEEEECCCCEEEEHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC GLKWCEDVPFVLWGQNACDEMGAEWVHSIFGEFAGLIPFDMSDNGDVIIGRAGDFWAGFV CCCHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCHHHHHH GAIYIKELGWMTLDNFFAKQGVMEALNSSMNNPLSISASGSKMVGGIAGAMISYHVDMTE HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHEEEEEEECEEE VYVCENGNSIKTGFPNGLINKVKSGAQFGRCEHLN EEEEECCCEEECCCCHHHHHHHHCCCCCCCCCCCC >Mature Secondary Structure MKLNKFTVAILGMLSAGSALAAGPLLTSDDTNPKPYVWDTSKGSIPVYVDGGAAFTYDYD CCCCCEEEEEHHHHCCCCCHHCCCEEECCCCCCCCEEEECCCCCEEEEECCCEEEEEECC GSVFLSIDRAREITQFAFDQWNNVETSTFRADIAGTIQDKTGIADVTGANAAEIYTKQNG CEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCC YGFWVLYDTDGSILEDFFGVPKSAVLGIAFPEIADENNVIIEATAVLNGWNVYVNDTEGN EEEEEEECCCCHHHHHHHCCCCHHEEEEECCCCCCCCCEEEEEEEEEECCEEEEECCCCC QVAGVFTHEFGHAINLSHSQTNGQLGYISNTFEPLYPGVAGCGVEPIHAYNWPDWYAPTN EEEEEEEECCCCEEECCCCCCCCEEEEECCCCCHHCCCHHCCCCCCCCCCCCCCCCCCCC PADPEIIETMFPFISHNGAGGTAQSTVNVLDDKVSISNLYPTDAYKTGFGAIEGKLRLKD CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEEEEEC GQTEYSGVNIIARNLSDPLMDAVSAQSGYLTQGKVGPDGYFKINGLTPGQSYVLYTEEIQ CCCCCCCEEEEEECCCHHHHHHHHCCCCCEECCCCCCCCEEEEECCCCCCEEEEEEEEEE VGGYPTRQMPIVSVAEYWNENEGSDPVTDNQCDFTPIVAEAGKTKQADLTFNGYDDGINF ECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCC RPIVNAFLTDLAKNGRSSMGTIMGYGFTWNETKGFEMLPDYVTAETGRMNRNGSKILVNA HHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCHHCCCCCCCCCCCCEEEEEC DQDRNGVSAPAIWSDSKGVMPLGDFTGNSCGGGTQHGTEAASAWDIDDAGNTVVGLAYKD CCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE VDGNGMCYEYDKGELVPFIWTPKAGMHELDTQDVDWNINSWVRAHAISGNGEVALGSLDG CCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCC WEAVAWVNEGKMINLYQKAGATEANAASYDGKTIALATEAGNVLLWDHSKPDSNAFTDIG CEEEEEECCCCEEEEHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC GLKWCEDVPFVLWGQNACDEMGAEWVHSIFGEFAGLIPFDMSDNGDVIIGRAGDFWAGFV CCCHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCHHHHHH GAIYIKELGWMTLDNFFAKQGVMEALNSSMNNPLSISASGSKMVGGIAGAMISYHVDMTE HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHEEEEEEECEEE VYVCENGNSIKTGFPNGLINKVKSGAQFGRCEHLN EEEEECCCEEECCCCHHHHHHHHCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA