Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775010

Identifier: 119775010

GI number: 119775010

Start: 2288636

End: 2291083

Strand: Direct

Name: 119775010

Synonym: Sama_1875

Alternate gene names: NA

Gene position: 2288636-2291083 (Clockwise)

Preceding gene: 119775009

Following gene: 119775011

Centisome position: 53.15

GC content: 52.04

Gene sequence:

>2448_bases
ATGAAACTCAATAAATTTACTGTTGCAATACTTGGCATGCTGAGTGCGGGCTCCGCACTGGCCGCTGGCCCACTGCTCAC
GTCGGATGACACCAATCCCAAGCCCTATGTCTGGGACACGTCAAAAGGGTCGATTCCCGTTTATGTCGATGGCGGCGCCG
CGTTTACCTACGATTACGATGGCAGCGTGTTTTTGTCTATCGATCGCGCCAGAGAGATTACCCAATTTGCCTTTGATCAG
TGGAACAACGTAGAAACATCCACGTTCCGGGCTGATATTGCAGGCACAATTCAGGACAAAACCGGCATCGCCGATGTAAC
AGGTGCCAATGCCGCTGAAATCTATACCAAGCAAAATGGTTATGGCTTCTGGGTACTGTATGACACAGACGGCAGTATCC
TCGAAGACTTTTTCGGGGTACCGAAAAGTGCCGTACTGGGTATCGCCTTCCCAGAAATTGCCGATGAAAACAACGTGATT
ATCGAAGCCACCGCGGTACTTAACGGTTGGAACGTCTACGTTAACGATACCGAAGGCAACCAGGTAGCCGGTGTGTTTAC
CCATGAATTTGGCCATGCGATTAACCTGTCACACTCCCAGACCAATGGCCAATTGGGTTACATCAGCAACACCTTTGAGC
CTCTCTACCCCGGCGTTGCCGGTTGCGGTGTAGAGCCGATACACGCCTATAACTGGCCGGATTGGTATGCCCCAACCAAT
CCTGCAGATCCCGAGATCATTGAAACCATGTTCCCCTTTATCAGCCACAACGGCGCTGGCGGAACAGCCCAAAGCACGGT
CAATGTGCTGGATGACAAAGTCTCAATTTCCAATCTCTATCCAACCGATGCCTACAAAACCGGCTTTGGCGCAATCGAAG
GCAAACTTCGTCTCAAGGATGGCCAGACCGAATACAGTGGCGTCAATATCATTGCCCGTAACCTCAGCGATCCGCTGATG
GATGCGGTGTCCGCTCAGTCGGGTTATCTGACTCAGGGGAAGGTGGGCCCCGATGGCTATTTCAAAATCAACGGCCTGAC
TCCTGGACAAAGCTATGTGCTTTACACCGAAGAGATCCAGGTTGGCGGATATCCAACCCGTCAGATGCCCATCGTCTCGG
TGGCCGAATACTGGAATGAGAATGAGGGAAGCGATCCAGTCACTGATAATCAGTGTGATTTCACCCCGATTGTTGCCGAA
GCCGGCAAAACCAAGCAGGCCGATCTCACCTTTAACGGCTATGACGACGGCATCAACTTCCGCCCCATCGTCAACGCATT
CCTGACGGATCTTGCCAAAAATGGCCGCTCTTCCATGGGTACCATCATGGGGTATGGCTTTACCTGGAATGAGACCAAGG
GCTTTGAAATGCTGCCCGATTATGTCACGGCTGAGACAGGTCGCATGAACCGCAACGGCAGCAAAATTCTTGTGAATGCA
GATCAGGATCGCAACGGCGTCAGCGCCCCGGCAATCTGGTCTGATTCCAAAGGCGTGATGCCTCTGGGCGACTTCACCGG
TAACAGCTGTGGCGGTGGCACGCAACATGGTACCGAAGCGGCTTCCGCGTGGGATATTGACGACGCCGGTAATACGGTTG
TGGGCTTGGCTTACAAGGATGTCGACGGCAATGGCATGTGCTACGAGTACGACAAAGGCGAGCTGGTTCCTTTCATCTGG
ACACCGAAAGCTGGCATGCATGAGCTGGACACCCAGGATGTTGACTGGAACATCAACTCCTGGGTACGAGCCCATGCCAT
TTCAGGTAATGGCGAAGTGGCTCTGGGATCACTCGATGGCTGGGAAGCGGTCGCTTGGGTAAATGAAGGGAAAATGATCA
ACCTTTACCAAAAGGCCGGTGCAACTGAAGCGAACGCCGCATCTTACGATGGCAAAACCATCGCTCTGGCGACTGAAGCA
GGCAATGTACTGCTTTGGGATCACAGCAAACCCGACAGCAATGCCTTCACCGATATTGGTGGTCTGAAATGGTGTGAAGA
TGTGCCCTTTGTACTCTGGGGTCAGAATGCCTGCGACGAAATGGGTGCTGAATGGGTTCACAGTATTTTTGGTGAATTCG
CAGGTTTGATCCCATTCGATATGAGTGACAACGGCGATGTCATCATAGGTCGCGCAGGTGACTTCTGGGCGGGCTTTGTT
GGCGCTATCTACATCAAAGAGCTCGGCTGGATGACGCTGGATAACTTCTTCGCCAAACAGGGCGTGATGGAAGCGCTCAA
CTCCTCAATGAATAACCCACTGTCCATCAGCGCTTCTGGCAGCAAAATGGTGGGGGGTATCGCTGGTGCCATGATCTCAT
ACCATGTTGATATGACAGAGGTTTATGTCTGTGAAAACGGTAACTCAATCAAGACAGGCTTCCCCAATGGTCTGATAAAC
AAAGTGAAATCCGGTGCTCAGTTCGGTCGCTGTGAACACTTGAATTAA

Upstream 100 bases:

>100_bases
CCATGCTGAAAACGACCGGTGCCTTTAGTGCGACAGACTTTATGAGCCTGGTTGGAAAAGCGGTTTCAGAGCAATGGATC
AGCAATGGGAAGATGAAATA

Downstream 100 bases:

>100_bases
TAGCAGGTGTGGAGAGGCGCTAATGCAGGCGCTCTCCTTTTCACAAGACTTAAATCCAGAGGGCCATGTCAGTTGGCACT
GAACATGGCCAGACATTTCA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 815; Mature: 815

Protein sequence:

>815_residues
MKLNKFTVAILGMLSAGSALAAGPLLTSDDTNPKPYVWDTSKGSIPVYVDGGAAFTYDYDGSVFLSIDRAREITQFAFDQ
WNNVETSTFRADIAGTIQDKTGIADVTGANAAEIYTKQNGYGFWVLYDTDGSILEDFFGVPKSAVLGIAFPEIADENNVI
IEATAVLNGWNVYVNDTEGNQVAGVFTHEFGHAINLSHSQTNGQLGYISNTFEPLYPGVAGCGVEPIHAYNWPDWYAPTN
PADPEIIETMFPFISHNGAGGTAQSTVNVLDDKVSISNLYPTDAYKTGFGAIEGKLRLKDGQTEYSGVNIIARNLSDPLM
DAVSAQSGYLTQGKVGPDGYFKINGLTPGQSYVLYTEEIQVGGYPTRQMPIVSVAEYWNENEGSDPVTDNQCDFTPIVAE
AGKTKQADLTFNGYDDGINFRPIVNAFLTDLAKNGRSSMGTIMGYGFTWNETKGFEMLPDYVTAETGRMNRNGSKILVNA
DQDRNGVSAPAIWSDSKGVMPLGDFTGNSCGGGTQHGTEAASAWDIDDAGNTVVGLAYKDVDGNGMCYEYDKGELVPFIW
TPKAGMHELDTQDVDWNINSWVRAHAISGNGEVALGSLDGWEAVAWVNEGKMINLYQKAGATEANAASYDGKTIALATEA
GNVLLWDHSKPDSNAFTDIGGLKWCEDVPFVLWGQNACDEMGAEWVHSIFGEFAGLIPFDMSDNGDVIIGRAGDFWAGFV
GAIYIKELGWMTLDNFFAKQGVMEALNSSMNNPLSISASGSKMVGGIAGAMISYHVDMTEVYVCENGNSIKTGFPNGLIN
KVKSGAQFGRCEHLN

Sequences:

>Translated_815_residues
MKLNKFTVAILGMLSAGSALAAGPLLTSDDTNPKPYVWDTSKGSIPVYVDGGAAFTYDYDGSVFLSIDRAREITQFAFDQ
WNNVETSTFRADIAGTIQDKTGIADVTGANAAEIYTKQNGYGFWVLYDTDGSILEDFFGVPKSAVLGIAFPEIADENNVI
IEATAVLNGWNVYVNDTEGNQVAGVFTHEFGHAINLSHSQTNGQLGYISNTFEPLYPGVAGCGVEPIHAYNWPDWYAPTN
PADPEIIETMFPFISHNGAGGTAQSTVNVLDDKVSISNLYPTDAYKTGFGAIEGKLRLKDGQTEYSGVNIIARNLSDPLM
DAVSAQSGYLTQGKVGPDGYFKINGLTPGQSYVLYTEEIQVGGYPTRQMPIVSVAEYWNENEGSDPVTDNQCDFTPIVAE
AGKTKQADLTFNGYDDGINFRPIVNAFLTDLAKNGRSSMGTIMGYGFTWNETKGFEMLPDYVTAETGRMNRNGSKILVNA
DQDRNGVSAPAIWSDSKGVMPLGDFTGNSCGGGTQHGTEAASAWDIDDAGNTVVGLAYKDVDGNGMCYEYDKGELVPFIW
TPKAGMHELDTQDVDWNINSWVRAHAISGNGEVALGSLDGWEAVAWVNEGKMINLYQKAGATEANAASYDGKTIALATEA
GNVLLWDHSKPDSNAFTDIGGLKWCEDVPFVLWGQNACDEMGAEWVHSIFGEFAGLIPFDMSDNGDVIIGRAGDFWAGFV
GAIYIKELGWMTLDNFFAKQGVMEALNSSMNNPLSISASGSKMVGGIAGAMISYHVDMTEVYVCENGNSIKTGFPNGLIN
KVKSGAQFGRCEHLN
>Mature_815_residues
MKLNKFTVAILGMLSAGSALAAGPLLTSDDTNPKPYVWDTSKGSIPVYVDGGAAFTYDYDGSVFLSIDRAREITQFAFDQ
WNNVETSTFRADIAGTIQDKTGIADVTGANAAEIYTKQNGYGFWVLYDTDGSILEDFFGVPKSAVLGIAFPEIADENNVI
IEATAVLNGWNVYVNDTEGNQVAGVFTHEFGHAINLSHSQTNGQLGYISNTFEPLYPGVAGCGVEPIHAYNWPDWYAPTN
PADPEIIETMFPFISHNGAGGTAQSTVNVLDDKVSISNLYPTDAYKTGFGAIEGKLRLKDGQTEYSGVNIIARNLSDPLM
DAVSAQSGYLTQGKVGPDGYFKINGLTPGQSYVLYTEEIQVGGYPTRQMPIVSVAEYWNENEGSDPVTDNQCDFTPIVAE
AGKTKQADLTFNGYDDGINFRPIVNAFLTDLAKNGRSSMGTIMGYGFTWNETKGFEMLPDYVTAETGRMNRNGSKILVNA
DQDRNGVSAPAIWSDSKGVMPLGDFTGNSCGGGTQHGTEAASAWDIDDAGNTVVGLAYKDVDGNGMCYEYDKGELVPFIW
TPKAGMHELDTQDVDWNINSWVRAHAISGNGEVALGSLDGWEAVAWVNEGKMINLYQKAGATEANAASYDGKTIALATEA
GNVLLWDHSKPDSNAFTDIGGLKWCEDVPFVLWGQNACDEMGAEWVHSIFGEFAGLIPFDMSDNGDVIIGRAGDFWAGFV
GAIYIKELGWMTLDNFFAKQGVMEALNSSMNNPLSISASGSKMVGGIAGAMISYHVDMTEVYVCENGNSIKTGFPNGLIN
KVKSGAQFGRCEHLN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 87763; Mature: 87763

Theoretical pI: Translated: 4.14; Mature: 4.14

Prosite motif: PS00142 ZINC_PROTEASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLNKFTVAILGMLSAGSALAAGPLLTSDDTNPKPYVWDTSKGSIPVYVDGGAAFTYDYD
CCCCCEEEEEHHHHCCCCCHHCCCEEECCCCCCCCEEEECCCCCEEEEECCCEEEEEECC
GSVFLSIDRAREITQFAFDQWNNVETSTFRADIAGTIQDKTGIADVTGANAAEIYTKQNG
CEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCC
YGFWVLYDTDGSILEDFFGVPKSAVLGIAFPEIADENNVIIEATAVLNGWNVYVNDTEGN
EEEEEEECCCCHHHHHHHCCCCHHEEEEECCCCCCCCCEEEEEEEEEECCEEEEECCCCC
QVAGVFTHEFGHAINLSHSQTNGQLGYISNTFEPLYPGVAGCGVEPIHAYNWPDWYAPTN
EEEEEEEECCCCEEECCCCCCCCEEEEECCCCCHHCCCHHCCCCCCCCCCCCCCCCCCCC
PADPEIIETMFPFISHNGAGGTAQSTVNVLDDKVSISNLYPTDAYKTGFGAIEGKLRLKD
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEEEEEC
GQTEYSGVNIIARNLSDPLMDAVSAQSGYLTQGKVGPDGYFKINGLTPGQSYVLYTEEIQ
CCCCCCCEEEEEECCCHHHHHHHHCCCCCEECCCCCCCCEEEEECCCCCCEEEEEEEEEE
VGGYPTRQMPIVSVAEYWNENEGSDPVTDNQCDFTPIVAEAGKTKQADLTFNGYDDGINF
ECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCC
RPIVNAFLTDLAKNGRSSMGTIMGYGFTWNETKGFEMLPDYVTAETGRMNRNGSKILVNA
HHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCHHCCCCCCCCCCCCEEEEEC
DQDRNGVSAPAIWSDSKGVMPLGDFTGNSCGGGTQHGTEAASAWDIDDAGNTVVGLAYKD
CCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
VDGNGMCYEYDKGELVPFIWTPKAGMHELDTQDVDWNINSWVRAHAISGNGEVALGSLDG
CCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCC
WEAVAWVNEGKMINLYQKAGATEANAASYDGKTIALATEAGNVLLWDHSKPDSNAFTDIG
CEEEEEECCCCEEEEHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC
GLKWCEDVPFVLWGQNACDEMGAEWVHSIFGEFAGLIPFDMSDNGDVIIGRAGDFWAGFV
CCCHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCHHHHHH
GAIYIKELGWMTLDNFFAKQGVMEALNSSMNNPLSISASGSKMVGGIAGAMISYHVDMTE
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHEEEEEEECEEE
VYVCENGNSIKTGFPNGLINKVKSGAQFGRCEHLN
EEEEECCCEEECCCCHHHHHHHHCCCCCCCCCCCC
>Mature Secondary Structure
MKLNKFTVAILGMLSAGSALAAGPLLTSDDTNPKPYVWDTSKGSIPVYVDGGAAFTYDYD
CCCCCEEEEEHHHHCCCCCHHCCCEEECCCCCCCCEEEECCCCCEEEEECCCEEEEEECC
GSVFLSIDRAREITQFAFDQWNNVETSTFRADIAGTIQDKTGIADVTGANAAEIYTKQNG
CEEEEEEHHHHHHHHHHHHCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCC
YGFWVLYDTDGSILEDFFGVPKSAVLGIAFPEIADENNVIIEATAVLNGWNVYVNDTEGN
EEEEEEECCCCHHHHHHHCCCCHHEEEEECCCCCCCCCEEEEEEEEEECCEEEEECCCCC
QVAGVFTHEFGHAINLSHSQTNGQLGYISNTFEPLYPGVAGCGVEPIHAYNWPDWYAPTN
EEEEEEEECCCCEEECCCCCCCCEEEEECCCCCHHCCCHHCCCCCCCCCCCCCCCCCCCC
PADPEIIETMFPFISHNGAGGTAQSTVNVLDDKVSISNLYPTDAYKTGFGAIEGKLRLKD
CCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCEEECCCCCCCCCCCCCCEEEEEEEEEC
GQTEYSGVNIIARNLSDPLMDAVSAQSGYLTQGKVGPDGYFKINGLTPGQSYVLYTEEIQ
CCCCCCCEEEEEECCCHHHHHHHHCCCCCEECCCCCCCCEEEEECCCCCCEEEEEEEEEE
VGGYPTRQMPIVSVAEYWNENEGSDPVTDNQCDFTPIVAEAGKTKQADLTFNGYDDGINF
ECCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCEEEEEECCCCCCCCC
RPIVNAFLTDLAKNGRSSMGTIMGYGFTWNETKGFEMLPDYVTAETGRMNRNGSKILVNA
HHHHHHHHHHHHHCCCCCCCEEEECCEEECCCCCCCCCCCHHCCCCCCCCCCCCEEEEEC
DQDRNGVSAPAIWSDSKGVMPLGDFTGNSCGGGTQHGTEAASAWDIDDAGNTVVGLAYKD
CCCCCCCCCCEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEE
VDGNGMCYEYDKGELVPFIWTPKAGMHELDTQDVDWNINSWVRAHAISGNGEVALGSLDG
CCCCCEEEEECCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEECCCC
WEAVAWVNEGKMINLYQKAGATEANAASYDGKTIALATEAGNVLLWDHSKPDSNAFTDIG
CEEEEEECCCCEEEEHHHCCCCCCCCCCCCCCEEEEEECCCCEEEEECCCCCCCCCCCCC
GLKWCEDVPFVLWGQNACDEMGAEWVHSIFGEFAGLIPFDMSDNGDVIIGRAGDFWAGFV
CCCHHCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCHHHHHH
GAIYIKELGWMTLDNFFAKQGVMEALNSSMNNPLSISASGSKMVGGIAGAMISYHVDMTE
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHEEEEEEECEEE
VYVCENGNSIKTGFPNGLINKVKSGAQFGRCEHLN
EEEEECCCEEECCCCHHHHHHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA