Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775009

Identifier: 119775009

GI number: 119775009

Start: 2288016

End: 2288636

Strand: Direct

Name: 119775009

Synonym: Sama_1874

Alternate gene names: NA

Gene position: 2288016-2288636 (Clockwise)

Preceding gene: 119775008

Following gene: 119775010

Centisome position: 53.13

GC content: 48.63

Gene sequence:

>621_bases
ATGAAATTCAAACCCTACCTGTTGGCGCTGCTCCCAGCGCTGGTGTTGCTTGGCTCGCCGGCTCAAGCAGCAAAACTTAA
ACCACAAAATTTGAAACAACTTATCAGTGAATCCGAAAGCATTCTGTCCGGGCAGGTTCAATCTGTCACAGACGGAATTT
CGAACCAGGGTGTTCCCTACACAGAGGTCACAATCAAGGTGAATAACGCGGCCAAAGGCCAGCATGAGAAAAACTCCATC
TACACATTTCGTCAATTTGGATTAACCAAACCCAGGGCCAATGCAAACGGCACCAAGCTGCTGGCCGTATCGCCAGAGGG
CTTTCCCCGCTGGAATGCCAATGAAACTGTCATTGTATTCATGCACAAAGCAGCAAAGCTGACTGGACTGCGTACCACTG
CGGGTATGGCTAACGGTAAGTTCGTGGTTCAGGGCGGCAAAGTCAGCAACGAATTCAATAACTTTGGCGTGTTCAATGAC
ATTGAATTTGCTCAGGGCCTGTTGTCCGAGTCAGAAAACACCATGCTGAAAACGACCGGTGCCTTTAGTGCGACAGACTT
TATGAGCCTGGTTGGAAAAGCGGTTTCAGAGCAATGGATCAGCAATGGGAAGATGAAATAA

Upstream 100 bases:

>100_bases
AGGGATTCCCTGATATATGCCAAAAGTCCGAATTGCTAGCTTGAAACCATGGTAGTACCCCCTACCAAAGCTCAAGTCAT
AAAAACAATTAGGATACTTC

Downstream 100 bases:

>100_bases
TGAAACTCAATAAATTTACTGTTGCAATACTTGGCATGCTGAGTGCGGGCTCCGCACTGGCCGCTGGCCCACTGCTCACG
TCGGATGACACCAATCCCAA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 206; Mature: 206

Protein sequence:

>206_residues
MKFKPYLLALLPALVLLGSPAQAAKLKPQNLKQLISESESILSGQVQSVTDGISNQGVPYTEVTIKVNNAAKGQHEKNSI
YTFRQFGLTKPRANANGTKLLAVSPEGFPRWNANETVIVFMHKAAKLTGLRTTAGMANGKFVVQGGKVSNEFNNFGVFND
IEFAQGLLSESENTMLKTTGAFSATDFMSLVGKAVSEQWISNGKMK

Sequences:

>Translated_206_residues
MKFKPYLLALLPALVLLGSPAQAAKLKPQNLKQLISESESILSGQVQSVTDGISNQGVPYTEVTIKVNNAAKGQHEKNSI
YTFRQFGLTKPRANANGTKLLAVSPEGFPRWNANETVIVFMHKAAKLTGLRTTAGMANGKFVVQGGKVSNEFNNFGVFND
IEFAQGLLSESENTMLKTTGAFSATDFMSLVGKAVSEQWISNGKMK
>Mature_206_residues
MKFKPYLLALLPALVLLGSPAQAAKLKPQNLKQLISESESILSGQVQSVTDGISNQGVPYTEVTIKVNNAAKGQHEKNSI
YTFRQFGLTKPRANANGTKLLAVSPEGFPRWNANETVIVFMHKAAKLTGLRTTAGMANGKFVVQGGKVSNEFNNFGVFND
IEFAQGLLSESENTMLKTTGAFSATDFMSLVGKAVSEQWISNGKMK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 22259; Mature: 22259

Theoretical pI: Translated: 10.39; Mature: 10.39

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFKPYLLALLPALVLLGSPAQAAKLKPQNLKQLISESESILSGQVQSVTDGISNQGVPY
CCCCHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCE
TEVTIKVNNAAKGQHEKNSIYTFRQFGLTKPRANANGTKLLAVSPEGFPRWNANETVIVF
EEEEEEECCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEE
MHKAAKLTGLRTTAGMANGKFVVQGGKVSNEFNNFGVFNDIEFAQGLLSESENTMLKTTG
EECCHHHCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECC
AFSATDFMSLVGKAVSEQWISNGKMK
CCCHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKFKPYLLALLPALVLLGSPAQAAKLKPQNLKQLISESESILSGQVQSVTDGISNQGVPY
CCCCHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCE
TEVTIKVNNAAKGQHEKNSIYTFRQFGLTKPRANANGTKLLAVSPEGFPRWNANETVIVF
EEEEEEECCCCCCCCCCCCEEEHHHHCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEE
MHKAAKLTGLRTTAGMANGKFVVQGGKVSNEFNNFGVFNDIEFAQGLLSESENTMLKTTG
EECCHHHCCCHHHCCCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEECC
AFSATDFMSLVGKAVSEQWISNGKMK
CCCHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA