| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is cvrA [H]
Identifier: 119775006
GI number: 119775006
Start: 2281277
End: 2283277
Strand: Reverse
Name: cvrA [H]
Synonym: Sama_1871
Alternate gene names: 119775006
Gene position: 2283277-2281277 (Counterclockwise)
Preceding gene: 119775014
Following gene: 119775004
Centisome position: 53.02
GC content: 53.17
Gene sequence:
>2001_bases ATGGTTGAACATATCACCGGCATTCTGGCGCTTATTGGAGTGCTTTCGTTGTTTTGCCAGTGGCTGGGTTGGAAGTTAAG GCTTCCAGCCATTTTGCCTCTGCTCCTCTGTGGCCTGCTGCTTGGGCCCGGGCTTGGTTTTCTCAAGCCCGATGCCATTT TTGGCGATCTTCTGTTCCCGATGATTTCTCTGGGTGTTGCCATCATCTTATTTGAAGGTGCATTGACGCTTAACTTCAAA GAAATCAAAGACTATGGTCGAATGGTAACCCACCTCGTGACCATAGGTATGGTGGTGACCTGGGTGGCAATCTCCCTTGC GACTCACTACTTTATGGGATTTGATTGGGCGCTGGCCTGGTTATTCGGTGCTTTGGTGGTGGTGACAGGTCCCACAGTGA TAGTGCCCATGCTAAGGAGTGTACGTCCCAAGTCCCAGCTTGCCAGTATCCTTCGCTGGGAAGGCATAGTGATTGACCCC ATTGGCGCTGTGCTGGCGGTATTGGTATTTGAATATATCGCGGCCTCCCAAAATGCCACCGAGCACATTTTGATGTCATT CGGCTCGATTTTGGCGCTGGGTTTTGGTGTCGGAGCCGCCATGGGATATGTGGTGGGCTGGGTGCTTCGCAAAGATCTCT TGCCGCATTATCTGAGAAACACCGCCGTGCTCACCGTGATGCTGGGCACCTTTGTGGGCTCGAATCTGCTGCAGGAAGAA TCGGGTCTGCTCACGGTAACAGTGATGGGTATTTGGCTTGCCAATATGCGCGGGGTAGACATTGCCGATATTCTCGAGTT TAAAGAAACCCTGACGGTACTGATGATTTCGGCGCTGTTTATTTTGCTGGCGGCAAGGCTCGACTCCACTGCCATGCTGG ATTTAGGCTGGGGCGGCATTGGAGTGCTCGCCGTTGCCATGCTGATTGCCCGGCCACTCAGCGTGTGGCTGTCAGGCATA GGCACCAATCTTACGGCCCCCGAAAAGTGGTTTTTAAGTTGGGTGGCGCCACGGGGAATTGTGGCGGCGGCCGTTTCCTC GCTGTTTGCCATCAAGCTTGAAGAGCAGGGCGTGCCTGGCGCCGAGAAAATTGTGCCTCTGGTGTTTCTGATTATTATCG GCACTGTGGTTATTCAAAGTCTTTCAGCAGGCACCTGGGCCCGACTGCTTAAAGTCAAGGCCGACTCTGCCCAGGGACTG CTGCTCTTTGGAGCCTCGAGCTTTTCCCGCACCTTTGCCAAATTGTTGAAGACTAAAAATATCAAAGTCATCCTTGCCGA TACTAACTGGGACAATATTCGTCTGGCGCGGATGGACAACATCCCTGTTTACTTTGGCAATCCGGCATCGGAACACGCCG AGACTTATCTGGACTTGACCGGCATCGGTCGGGTGCTGGTGGTATCACCTTACCGGCAGCTAAATCCTTTGGTGAGTTTT CATTTTCAGGATTATTTTGGCGCCGAAAAGGTTTTTGGGCTGAACAATATGGAAGGCTCCAGCGCCCGTCATCTGGCCTC TGAAGTTTACATGAAGCGATTGTGCCTGTTTGGCGAAGGGATTTCTTACGCCAAAATCGCCAGCCAGATGGCGAAAGGCG CCATCTTGAAGAGTACCACCCTGAGGGAAAGTTTTACGCTGGTGGATTTTATGCGCCGCTACGGTGAAAGCGTGCTGCCA TTGGTGTATCTGCAGGATGAAAAGTTGCGTATTGTCACCGCCGGCAGCGACATCCCGGCCACTGGCATTGAGCTTATCAG TTTGATCCCGGTTGAGTCGCAGCAATACGCCAAAGAGCAGCAGGAAAAAGAAGCGCTTGAGAAGGCTCTGGCTGAGAAAG AAGACGCTGAACGCGCTGCGCTTGAAAAGCTGGCCCGTGAGCAGGAAGACGCGGCCCGTGAAGCGGCCAGTGAGGCGAAC GCAGGCTTTGAAGAAGAAACCGTTGGCAGTCCGGCACTCAAAGAGGGAGGCGGTGAAGGCAATCAACCGCTCAAAGCCTG A
Upstream 100 bases:
>100_bases GCCCCGTGGCGCTCTGCATAAAAATAGATAAGATGAAACAGACACATTTGGCTGCTACTGTGATCTTACTTTCAGGGATC TTCTGTTCAAGGATTAATAC
Downstream 100 bases:
>100_bases GACAAAACATTCACCAATTGGTGATATCTAAGCAGGAGTCCGACGACCACTTGATCCACTGTTGCAATCAGCAATAACAG AAAAGGCGCCCAGAGGCGCC
Product: sodium/hydrogen exchanger family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 666; Mature: 666
Protein sequence:
>666_residues MVEHITGILALIGVLSLFCQWLGWKLRLPAILPLLLCGLLLGPGLGFLKPDAIFGDLLFPMISLGVAIILFEGALTLNFK EIKDYGRMVTHLVTIGMVVTWVAISLATHYFMGFDWALAWLFGALVVVTGPTVIVPMLRSVRPKSQLASILRWEGIVIDP IGAVLAVLVFEYIAASQNATEHILMSFGSILALGFGVGAAMGYVVGWVLRKDLLPHYLRNTAVLTVMLGTFVGSNLLQEE SGLLTVTVMGIWLANMRGVDIADILEFKETLTVLMISALFILLAARLDSTAMLDLGWGGIGVLAVAMLIARPLSVWLSGI GTNLTAPEKWFLSWVAPRGIVAAAVSSLFAIKLEEQGVPGAEKIVPLVFLIIIGTVVIQSLSAGTWARLLKVKADSAQGL LLFGASSFSRTFAKLLKTKNIKVILADTNWDNIRLARMDNIPVYFGNPASEHAETYLDLTGIGRVLVVSPYRQLNPLVSF HFQDYFGAEKVFGLNNMEGSSARHLASEVYMKRLCLFGEGISYAKIASQMAKGAILKSTTLRESFTLVDFMRRYGESVLP LVYLQDEKLRIVTAGSDIPATGIELISLIPVESQQYAKEQQEKEALEKALAEKEDAERAALEKLAREQEDAAREAASEAN AGFEEETVGSPALKEGGGEGNQPLKA
Sequences:
>Translated_666_residues MVEHITGILALIGVLSLFCQWLGWKLRLPAILPLLLCGLLLGPGLGFLKPDAIFGDLLFPMISLGVAIILFEGALTLNFK EIKDYGRMVTHLVTIGMVVTWVAISLATHYFMGFDWALAWLFGALVVVTGPTVIVPMLRSVRPKSQLASILRWEGIVIDP IGAVLAVLVFEYIAASQNATEHILMSFGSILALGFGVGAAMGYVVGWVLRKDLLPHYLRNTAVLTVMLGTFVGSNLLQEE SGLLTVTVMGIWLANMRGVDIADILEFKETLTVLMISALFILLAARLDSTAMLDLGWGGIGVLAVAMLIARPLSVWLSGI GTNLTAPEKWFLSWVAPRGIVAAAVSSLFAIKLEEQGVPGAEKIVPLVFLIIIGTVVIQSLSAGTWARLLKVKADSAQGL LLFGASSFSRTFAKLLKTKNIKVILADTNWDNIRLARMDNIPVYFGNPASEHAETYLDLTGIGRVLVVSPYRQLNPLVSF HFQDYFGAEKVFGLNNMEGSSARHLASEVYMKRLCLFGEGISYAKIASQMAKGAILKSTTLRESFTLVDFMRRYGESVLP LVYLQDEKLRIVTAGSDIPATGIELISLIPVESQQYAKEQQEKEALEKALAEKEDAERAALEKLAREQEDAAREAASEAN AGFEEETVGSPALKEGGGEGNQPLKA >Mature_666_residues MVEHITGILALIGVLSLFCQWLGWKLRLPAILPLLLCGLLLGPGLGFLKPDAIFGDLLFPMISLGVAIILFEGALTLNFK EIKDYGRMVTHLVTIGMVVTWVAISLATHYFMGFDWALAWLFGALVVVTGPTVIVPMLRSVRPKSQLASILRWEGIVIDP IGAVLAVLVFEYIAASQNATEHILMSFGSILALGFGVGAAMGYVVGWVLRKDLLPHYLRNTAVLTVMLGTFVGSNLLQEE SGLLTVTVMGIWLANMRGVDIADILEFKETLTVLMISALFILLAARLDSTAMLDLGWGGIGVLAVAMLIARPLSVWLSGI GTNLTAPEKWFLSWVAPRGIVAAAVSSLFAIKLEEQGVPGAEKIVPLVFLIIIGTVVIQSLSAGTWARLLKVKADSAQGL LLFGASSFSRTFAKLLKTKNIKVILADTNWDNIRLARMDNIPVYFGNPASEHAETYLDLTGIGRVLVVSPYRQLNPLVSF HFQDYFGAEKVFGLNNMEGSSARHLASEVYMKRLCLFGEGISYAKIASQMAKGAILKSTTLRESFTLVDFMRRYGESVLP LVYLQDEKLRIVTAGSDIPATGIELISLIPVESQQYAKEQQEKEALEKALAEKEDAERAALEKLAREQEDAAREAASEAN AGFEEETVGSPALKEGGGEGNQPLKA
Specific function: Participates in control of cell volume in low-osmolarity conditions [H]
COG id: COG0025
COG function: function code P; NhaP-type Na+/H+ and K+/H+ antiporters
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 1 RCK C-terminal domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR006153 - InterPro: IPR016169 - InterPro: IPR006037 - InterPro: IPR005170 [H]
Pfam domain/function: PF03471 CorC_HlyC; PF00999 Na_H_Exchanger; PF02080 TrkA_C [H]
EC number: NA
Molecular weight: Translated: 72282; Mature: 72282
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 2.9 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 2.9 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVEHITGILALIGVLSLFCQWLGWKLRLPAILPLLLCGLLLGPGLGFLKPDAIFGDLLFP CHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH MISLGVAIILFEGALTLNFKEIKDYGRMVTHLVTIGMVVTWVAISLATHYFMGFDWALAW HHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFGALVVVTGPTVIVPMLRSVRPKSQLASILRWEGIVIDPIGAVLAVLVFEYIAASQNAT HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHCCCCHH EHILMSFGSILALGFGVGAAMGYVVGWVLRKDLLPHYLRNTAVLTVMLGTFVGSNLLQEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC SGLLTVTVMGIWLANMRGVDIADILEFKETLTVLMISALFILLAARLDSTAMLDLGWGGI CCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH GVLAVAMLIARPLSVWLSGIGTNLTAPEKWFLSWVAPRGIVAAAVSSLFAIKLEEQGVPG HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCCC AEKIVPLVFLIIIGTVVIQSLSAGTWARLLKVKADSAQGLLLFGASSFSRTFAKLLKTKN HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCC IKVILADTNWDNIRLARMDNIPVYFGNPASEHAETYLDLTGIGRVLVVSPYRQLNPLVSF EEEEEEECCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHCCCCEEEECCHHHHCHHHHH HFQDYFGAEKVFGLNNMEGSSARHLASEVYMKRLCLFGEGISYAKIASQMAKGAILKSTT HHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHH LRESFTLVDFMRRYGESVLPLVYLQDEKLRIVTAGSDIPATGIELISLIPVESQQYAKEQ HHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHH QEKEALEKALAEKEDAERAALEKLAREQEDAAREAASEANAGFEEETVGSPALKEGGGEG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHCCCCCC NQPLKA CCCCCC >Mature Secondary Structure MVEHITGILALIGVLSLFCQWLGWKLRLPAILPLLLCGLLLGPGLGFLKPDAIFGDLLFP CHHHHHHHHHHHHHHHHHHHHHCCEECHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH MISLGVAIILFEGALTLNFKEIKDYGRMVTHLVTIGMVVTWVAISLATHYFMGFDWALAW HHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LFGALVVVTGPTVIVPMLRSVRPKSQLASILRWEGIVIDPIGAVLAVLVFEYIAASQNAT HHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHCCEEECCHHHHHHHHHHHHHHCCCCHH EHILMSFGSILALGFGVGAAMGYVVGWVLRKDLLPHYLRNTAVLTVMLGTFVGSNLLQEE HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC SGLLTVTVMGIWLANMRGVDIADILEFKETLTVLMISALFILLAARLDSTAMLDLGWGGI CCEEEEHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCHH GVLAVAMLIARPLSVWLSGIGTNLTAPEKWFLSWVAPRGIVAAAVSSLFAIKLEEQGVPG HHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHEEEECCCCCCC AEKIVPLVFLIIIGTVVIQSLSAGTWARLLKVKADSAQGLLLFGASSFSRTFAKLLKTKN HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCEEEEECCCHHHHHHHHHHHCCC IKVILADTNWDNIRLARMDNIPVYFGNPASEHAETYLDLTGIGRVLVVSPYRQLNPLVSF EEEEEEECCCCCEEEEEECCCCEEECCCHHHHHHHHHHHHCCCCEEEECCHHHHCHHHHH HFQDYFGAEKVFGLNNMEGSSARHLASEVYMKRLCLFGEGISYAKIASQMAKGAILKSTT HHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHH LRESFTLVDFMRRYGESVLPLVYLQDEKLRIVTAGSDIPATGIELISLIPVESQQYAKEQ HHHHHHHHHHHHHHCCCCCCEEEEECCCEEEEECCCCCCCHHHHHHHHCCCCHHHHHHHH QEKEALEKALAEKEDAERAALEKLAREQEDAAREAASEANAGFEEETVGSPALKEGGGEG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCHHHCCCCCC NQPLKA CCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 12620739 [H]