| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119775014
Identifier: 119775014
GI number: 119775014
Start: 2294720
End: 2296039
Strand: Reverse
Name: 119775014
Synonym: Sama_1879
Alternate gene names: NA
Gene position: 2296039-2294720 (Counterclockwise)
Preceding gene: 119775015
Following gene: 119775006
Centisome position: 53.32
GC content: 52.88
Gene sequence:
>1320_bases ATGCCTCTGGCGGGGATAATCACCTTGTTGAAAGCCTTGCAACTGTTATTGTTGTTTGCGCTGGTCTGTTTGCAGGCCAT GCCCGTGCTTGCTGGCGTCGTGCCCAAAGAGCAGGCGCGGGAGCTTAAAAATCGTTTTCGCATCGACCATATGGTGGAGA GCCTGACGCTGGTTATTCAGCGTGACTACGGCAGTGCACCCGTGGTGGTCGTGTTGCCGGATGGCAGCAAATGGTATGCC TCCAGACACCCAGAAACGGTTAAATGGACCGATGGGGTGACGGGTGACATCATTTCCATCGAAAATCCCCAGCCCGGTCC CTGGCAGTTGGTAGGCAAGGTGTCCAAGGGCTCAACGCTGCACATGTTAAGTAAGCTCTCGGTGGAAATAGACCCTTTGC CCCAGCCCTTGTTTCAGGGAGAGCGCATCAAAATTACCGCCAGACTCATGGGAGATGAACAGCGGCTCAGAATGCCGGGT TTGGACTATCTGGTAGAGTGGGTGGCCCGCTTTGTGAGCGATCATCAGCCAGGGGATGAAAACTTTGCGGCCGGTACAGT GACCGTGGGCAGCTATAAAGATGACGGTGAAGGCCTGGATGAACGACCCGATGACGGCATCTTTACCGGCACCATTAACC TGAATCAACCCTGGGGCCATTACAAATTTACCGTTCAGGCCCGCAACAATGTATTCGACCGTGAAGAAGAGATGGCGGTT ATTCTCTCCAGGCATCCCATCAATCTTCAGCTTATTGAGCCGGACGACCCGCTCACATCACCTTATCGTATGAGCGTCAG CATCGATGCTGAAGCATTGCAACTGGCAGAAACTCACCTGGAACTGGAATTGGTTGGCCCGGCAGGACTCCAGTTACCAA TCACCTTTTCCGGACTGACAGAAGGGCAGAATGAATTTGTGCTTCCTGAAGTCCATGAGTTCGGTAGTTACCGCATCAAA GGGGAAGCGTTCTCGACCACTGTGACCGGCCGCGAAATTGTCCTGAGTTTGCCGGAAAAATTTTTCAACCTTATCGAACC ACCTGCGCCACCGCCCAGTCCGGAGGAGATAGCAGAGCGCGAAGCAGCAATTGCAGCAGCTGAAGAGGCCAAAGCCAAAG AAAGTGCCATGATGGTCCTCATTGGTGTTAATCTGGTGTTGCTGCTGCTTGGCATAGTTGCCATTATCTTCTGGCGTAAG CGTCAGGCCTTGAAAAAGGCCCTTGAAGCCGCGGCTCTGGATGCCGCCAATCAGGACAAATCATCGAAATCCATGAAAGA AACTCTGGATGATATCGACCTGACGTTGCCTGATGATTAG
Upstream 100 bases:
>100_bases GCCTGGATTCCAATCGCCCAAGCCTTAAAGTTGTCCGAGCCACGGCCGATGAACTGGGTAATCATGAAAAACGGCTTGAT TTGGTAGGCAAATCGGGCAA
Downstream 100 bases:
>100_bases CAGAGTGCGCTGCACCTAAAAGACTGTTTAAAATTTAAGCTAACGTTCTGTTATCAAATATAAAGCCATTGACCCAAACA AAATGTTGCGGGTATGATGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 439; Mature: 438
Protein sequence:
>439_residues MPLAGIITLLKALQLLLLFALVCLQAMPVLAGVVPKEQARELKNRFRIDHMVESLTLVIQRDYGSAPVVVVLPDGSKWYA SRHPETVKWTDGVTGDIISIENPQPGPWQLVGKVSKGSTLHMLSKLSVEIDPLPQPLFQGERIKITARLMGDEQRLRMPG LDYLVEWVARFVSDHQPGDENFAAGTVTVGSYKDDGEGLDERPDDGIFTGTINLNQPWGHYKFTVQARNNVFDREEEMAV ILSRHPINLQLIEPDDPLTSPYRMSVSIDAEALQLAETHLELELVGPAGLQLPITFSGLTEGQNEFVLPEVHEFGSYRIK GEAFSTTVTGREIVLSLPEKFFNLIEPPAPPPSPEEIAEREAAIAAAEEAKAKESAMMVLIGVNLVLLLLGIVAIIFWRK RQALKKALEAAALDAANQDKSSKSMKETLDDIDLTLPDD
Sequences:
>Translated_439_residues MPLAGIITLLKALQLLLLFALVCLQAMPVLAGVVPKEQARELKNRFRIDHMVESLTLVIQRDYGSAPVVVVLPDGSKWYA SRHPETVKWTDGVTGDIISIENPQPGPWQLVGKVSKGSTLHMLSKLSVEIDPLPQPLFQGERIKITARLMGDEQRLRMPG LDYLVEWVARFVSDHQPGDENFAAGTVTVGSYKDDGEGLDERPDDGIFTGTINLNQPWGHYKFTVQARNNVFDREEEMAV ILSRHPINLQLIEPDDPLTSPYRMSVSIDAEALQLAETHLELELVGPAGLQLPITFSGLTEGQNEFVLPEVHEFGSYRIK GEAFSTTVTGREIVLSLPEKFFNLIEPPAPPPSPEEIAEREAAIAAAEEAKAKESAMMVLIGVNLVLLLLGIVAIIFWRK RQALKKALEAAALDAANQDKSSKSMKETLDDIDLTLPDD >Mature_438_residues PLAGIITLLKALQLLLLFALVCLQAMPVLAGVVPKEQARELKNRFRIDHMVESLTLVIQRDYGSAPVVVVLPDGSKWYAS RHPETVKWTDGVTGDIISIENPQPGPWQLVGKVSKGSTLHMLSKLSVEIDPLPQPLFQGERIKITARLMGDEQRLRMPGL DYLVEWVARFVSDHQPGDENFAAGTVTVGSYKDDGEGLDERPDDGIFTGTINLNQPWGHYKFTVQARNNVFDREEEMAVI LSRHPINLQLIEPDDPLTSPYRMSVSIDAEALQLAETHLELELVGPAGLQLPITFSGLTEGQNEFVLPEVHEFGSYRIKG EAFSTTVTGREIVLSLPEKFFNLIEPPAPPPSPEEIAEREAAIAAAEEAKAKESAMMVLIGVNLVLLLLGIVAIIFWRKR QALKKALEAAALDAANQDKSSKSMKETLDDIDLTLPDD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48448; Mature: 48317
Theoretical pI: Translated: 4.57; Mature: 4.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPLAGIITLLKALQLLLLFALVCLQAMPVLAGVVPKEQARELKNRFRIDHMVESLTLVIQ CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEE RDYGSAPVVVVLPDGSKWYASRHPETVKWTDGVTGDIISIENPQPGPWQLVGKVSKGSTL ECCCCCCEEEEEECCCCCHHCCCCCEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCHH HMLSKLSVEIDPLPQPLFQGERIKITARLMGDEQRLRMPGLDYLVEWVARFVSDHQPGDE HHHHHCCEEECCCCCHHHCCCEEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHCCCCCCC NFAAGTVTVGSYKDDGEGLDERPDDGIFTGTINLNQPWGHYKFTVQARNNVFDREEEMAV CCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCHHEEE ILSRHPINLQLIEPDDPLTSPYRMSVSIDAEALQLAETHLELELVGPAGLQLPITFSGLT EEECCCCEEEEECCCCCCCCCEEEEEEECHHHHHHHHHCEEEEEECCCCCEEEEEECCCC EGQNEFVLPEVHEFGSYRIKGEAFSTTVTGREIVLSLPEKFFNLIEPPAPPPSPEEIAER CCCCCEECCCHHHCCCEEEECCEEEEEECCHHHHHHCCHHHHHHCCCCCCCCCHHHHHHH EAAIAAAEEAKAKESAMMVLIGVNLVLLLLGIVAIIFWRKRQALKKALEAAALDAANQDK HHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SSKSMKETLDDIDLTLPDD HHHHHHHHHHHCCEECCCC >Mature Secondary Structure PLAGIITLLKALQLLLLFALVCLQAMPVLAGVVPKEQARELKNRFRIDHMVESLTLVIQ CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEE RDYGSAPVVVVLPDGSKWYASRHPETVKWTDGVTGDIISIENPQPGPWQLVGKVSKGSTL ECCCCCCEEEEEECCCCCHHCCCCCEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCHH HMLSKLSVEIDPLPQPLFQGERIKITARLMGDEQRLRMPGLDYLVEWVARFVSDHQPGDE HHHHHCCEEECCCCCHHHCCCEEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHCCCCCCC NFAAGTVTVGSYKDDGEGLDERPDDGIFTGTINLNQPWGHYKFTVQARNNVFDREEEMAV CCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCHHEEE ILSRHPINLQLIEPDDPLTSPYRMSVSIDAEALQLAETHLELELVGPAGLQLPITFSGLT EEECCCCEEEEECCCCCCCCCEEEEEEECHHHHHHHHHCEEEEEECCCCCEEEEEECCCC EGQNEFVLPEVHEFGSYRIKGEAFSTTVTGREIVLSLPEKFFNLIEPPAPPPSPEEIAER CCCCCEECCCHHHCCCEEEECCEEEEEECCHHHHHHCCHHHHHHCCCCCCCCCHHHHHHH EAAIAAAEEAKAKESAMMVLIGVNLVLLLLGIVAIIFWRKRQALKKALEAAALDAANQDK HHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC SSKSMKETLDDIDLTLPDD HHHHHHHHHHHCCEECCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA