Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119775014

Identifier: 119775014

GI number: 119775014

Start: 2294720

End: 2296039

Strand: Reverse

Name: 119775014

Synonym: Sama_1879

Alternate gene names: NA

Gene position: 2296039-2294720 (Counterclockwise)

Preceding gene: 119775015

Following gene: 119775006

Centisome position: 53.32

GC content: 52.88

Gene sequence:

>1320_bases
ATGCCTCTGGCGGGGATAATCACCTTGTTGAAAGCCTTGCAACTGTTATTGTTGTTTGCGCTGGTCTGTTTGCAGGCCAT
GCCCGTGCTTGCTGGCGTCGTGCCCAAAGAGCAGGCGCGGGAGCTTAAAAATCGTTTTCGCATCGACCATATGGTGGAGA
GCCTGACGCTGGTTATTCAGCGTGACTACGGCAGTGCACCCGTGGTGGTCGTGTTGCCGGATGGCAGCAAATGGTATGCC
TCCAGACACCCAGAAACGGTTAAATGGACCGATGGGGTGACGGGTGACATCATTTCCATCGAAAATCCCCAGCCCGGTCC
CTGGCAGTTGGTAGGCAAGGTGTCCAAGGGCTCAACGCTGCACATGTTAAGTAAGCTCTCGGTGGAAATAGACCCTTTGC
CCCAGCCCTTGTTTCAGGGAGAGCGCATCAAAATTACCGCCAGACTCATGGGAGATGAACAGCGGCTCAGAATGCCGGGT
TTGGACTATCTGGTAGAGTGGGTGGCCCGCTTTGTGAGCGATCATCAGCCAGGGGATGAAAACTTTGCGGCCGGTACAGT
GACCGTGGGCAGCTATAAAGATGACGGTGAAGGCCTGGATGAACGACCCGATGACGGCATCTTTACCGGCACCATTAACC
TGAATCAACCCTGGGGCCATTACAAATTTACCGTTCAGGCCCGCAACAATGTATTCGACCGTGAAGAAGAGATGGCGGTT
ATTCTCTCCAGGCATCCCATCAATCTTCAGCTTATTGAGCCGGACGACCCGCTCACATCACCTTATCGTATGAGCGTCAG
CATCGATGCTGAAGCATTGCAACTGGCAGAAACTCACCTGGAACTGGAATTGGTTGGCCCGGCAGGACTCCAGTTACCAA
TCACCTTTTCCGGACTGACAGAAGGGCAGAATGAATTTGTGCTTCCTGAAGTCCATGAGTTCGGTAGTTACCGCATCAAA
GGGGAAGCGTTCTCGACCACTGTGACCGGCCGCGAAATTGTCCTGAGTTTGCCGGAAAAATTTTTCAACCTTATCGAACC
ACCTGCGCCACCGCCCAGTCCGGAGGAGATAGCAGAGCGCGAAGCAGCAATTGCAGCAGCTGAAGAGGCCAAAGCCAAAG
AAAGTGCCATGATGGTCCTCATTGGTGTTAATCTGGTGTTGCTGCTGCTTGGCATAGTTGCCATTATCTTCTGGCGTAAG
CGTCAGGCCTTGAAAAAGGCCCTTGAAGCCGCGGCTCTGGATGCCGCCAATCAGGACAAATCATCGAAATCCATGAAAGA
AACTCTGGATGATATCGACCTGACGTTGCCTGATGATTAG

Upstream 100 bases:

>100_bases
GCCTGGATTCCAATCGCCCAAGCCTTAAAGTTGTCCGAGCCACGGCCGATGAACTGGGTAATCATGAAAAACGGCTTGAT
TTGGTAGGCAAATCGGGCAA

Downstream 100 bases:

>100_bases
CAGAGTGCGCTGCACCTAAAAGACTGTTTAAAATTTAAGCTAACGTTCTGTTATCAAATATAAAGCCATTGACCCAAACA
AAATGTTGCGGGTATGATGC

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 439; Mature: 438

Protein sequence:

>439_residues
MPLAGIITLLKALQLLLLFALVCLQAMPVLAGVVPKEQARELKNRFRIDHMVESLTLVIQRDYGSAPVVVVLPDGSKWYA
SRHPETVKWTDGVTGDIISIENPQPGPWQLVGKVSKGSTLHMLSKLSVEIDPLPQPLFQGERIKITARLMGDEQRLRMPG
LDYLVEWVARFVSDHQPGDENFAAGTVTVGSYKDDGEGLDERPDDGIFTGTINLNQPWGHYKFTVQARNNVFDREEEMAV
ILSRHPINLQLIEPDDPLTSPYRMSVSIDAEALQLAETHLELELVGPAGLQLPITFSGLTEGQNEFVLPEVHEFGSYRIK
GEAFSTTVTGREIVLSLPEKFFNLIEPPAPPPSPEEIAEREAAIAAAEEAKAKESAMMVLIGVNLVLLLLGIVAIIFWRK
RQALKKALEAAALDAANQDKSSKSMKETLDDIDLTLPDD

Sequences:

>Translated_439_residues
MPLAGIITLLKALQLLLLFALVCLQAMPVLAGVVPKEQARELKNRFRIDHMVESLTLVIQRDYGSAPVVVVLPDGSKWYA
SRHPETVKWTDGVTGDIISIENPQPGPWQLVGKVSKGSTLHMLSKLSVEIDPLPQPLFQGERIKITARLMGDEQRLRMPG
LDYLVEWVARFVSDHQPGDENFAAGTVTVGSYKDDGEGLDERPDDGIFTGTINLNQPWGHYKFTVQARNNVFDREEEMAV
ILSRHPINLQLIEPDDPLTSPYRMSVSIDAEALQLAETHLELELVGPAGLQLPITFSGLTEGQNEFVLPEVHEFGSYRIK
GEAFSTTVTGREIVLSLPEKFFNLIEPPAPPPSPEEIAEREAAIAAAEEAKAKESAMMVLIGVNLVLLLLGIVAIIFWRK
RQALKKALEAAALDAANQDKSSKSMKETLDDIDLTLPDD
>Mature_438_residues
PLAGIITLLKALQLLLLFALVCLQAMPVLAGVVPKEQARELKNRFRIDHMVESLTLVIQRDYGSAPVVVVLPDGSKWYAS
RHPETVKWTDGVTGDIISIENPQPGPWQLVGKVSKGSTLHMLSKLSVEIDPLPQPLFQGERIKITARLMGDEQRLRMPGL
DYLVEWVARFVSDHQPGDENFAAGTVTVGSYKDDGEGLDERPDDGIFTGTINLNQPWGHYKFTVQARNNVFDREEEMAVI
LSRHPINLQLIEPDDPLTSPYRMSVSIDAEALQLAETHLELELVGPAGLQLPITFSGLTEGQNEFVLPEVHEFGSYRIKG
EAFSTTVTGREIVLSLPEKFFNLIEPPAPPPSPEEIAEREAAIAAAEEAKAKESAMMVLIGVNLVLLLLGIVAIIFWRKR
QALKKALEAAALDAANQDKSSKSMKETLDDIDLTLPDD

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 48448; Mature: 48317

Theoretical pI: Translated: 4.57; Mature: 4.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLAGIITLLKALQLLLLFALVCLQAMPVLAGVVPKEQARELKNRFRIDHMVESLTLVIQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEE
RDYGSAPVVVVLPDGSKWYASRHPETVKWTDGVTGDIISIENPQPGPWQLVGKVSKGSTL
ECCCCCCEEEEEECCCCCHHCCCCCEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCHH
HMLSKLSVEIDPLPQPLFQGERIKITARLMGDEQRLRMPGLDYLVEWVARFVSDHQPGDE
HHHHHCCEEECCCCCHHHCCCEEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHCCCCCCC
NFAAGTVTVGSYKDDGEGLDERPDDGIFTGTINLNQPWGHYKFTVQARNNVFDREEEMAV
CCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCHHEEE
ILSRHPINLQLIEPDDPLTSPYRMSVSIDAEALQLAETHLELELVGPAGLQLPITFSGLT
EEECCCCEEEEECCCCCCCCCEEEEEEECHHHHHHHHHCEEEEEECCCCCEEEEEECCCC
EGQNEFVLPEVHEFGSYRIKGEAFSTTVTGREIVLSLPEKFFNLIEPPAPPPSPEEIAER
CCCCCEECCCHHHCCCEEEECCEEEEEECCHHHHHHCCHHHHHHCCCCCCCCCHHHHHHH
EAAIAAAEEAKAKESAMMVLIGVNLVLLLLGIVAIIFWRKRQALKKALEAAALDAANQDK
HHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SSKSMKETLDDIDLTLPDD
HHHHHHHHHHHCCEECCCC
>Mature Secondary Structure 
PLAGIITLLKALQLLLLFALVCLQAMPVLAGVVPKEQARELKNRFRIDHMVESLTLVIQ
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEEE
RDYGSAPVVVVLPDGSKWYASRHPETVKWTDGVTGDIISIENPQPGPWQLVGKVSKGSTL
ECCCCCCEEEEEECCCCCHHCCCCCEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCHH
HMLSKLSVEIDPLPQPLFQGERIKITARLMGDEQRLRMPGLDYLVEWVARFVSDHQPGDE
HHHHHCCEEECCCCCHHHCCCEEEEEEEECCCHHHCCCCCHHHHHHHHHHHHHCCCCCCC
NFAAGTVTVGSYKDDGEGLDERPDDGIFTGTINLNQPWGHYKFTVQARNNVFDREEEMAV
CCCEEEEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEEEEECCCCCCCCHHEEE
ILSRHPINLQLIEPDDPLTSPYRMSVSIDAEALQLAETHLELELVGPAGLQLPITFSGLT
EEECCCCEEEEECCCCCCCCCEEEEEEECHHHHHHHHHCEEEEEECCCCCEEEEEECCCC
EGQNEFVLPEVHEFGSYRIKGEAFSTTVTGREIVLSLPEKFFNLIEPPAPPPSPEEIAER
CCCCCEECCCHHHCCCEEEECCEEEEEECCHHHHHHCCHHHHHHCCCCCCCCCHHHHHHH
EAAIAAAEEAKAKESAMMVLIGVNLVLLLLGIVAIIFWRKRQALKKALEAAALDAANQDK
HHHHHHHHHHHHHHHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
SSKSMKETLDDIDLTLPDD
HHHHHHHHHHHCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA