| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is cpxA [H]
Identifier: 119775001
GI number: 119775001
Start: 2275054
End: 2276460
Strand: Direct
Name: cpxA [H]
Synonym: Sama_1866
Alternate gene names: 119775001
Gene position: 2275054-2276460 (Clockwise)
Preceding gene: 119774997
Following gene: 119775002
Centisome position: 52.83
GC content: 56.22
Gene sequence:
>1407_bases ATGAAGTTGTCCCGCCATCACCCCTTTGCCCGCCTGCAATGGCGCCTGTTTGGCTATTTCGGTTCCTCCTTGTTGGTGAT TTTGTTATTGGCCAGTCTGATCGAAGCCATGGTGCTGCACCAACTGTTGGTGTTGCCCAAAGAGACCAAGGCAAAGCTGT CGATGCTTGCTCAAGAGGCCGAAGCTCTCATTAAACAGGGCTCCCCCCAGGCGATTGCCCAGTGGGAGGCGGCGCAGTCG TTCCGCTTGCATGTGATTAACAGCCGTCTAGAAGGCGTCAGCGGCCGCCCCATTCATCCGCACTTTGAATTTAAGCTGGG ATTTATGCTTGGACCGGATCAGGCGCTGGGGGATCGGGTGCAAAAGCCCATCATCGGCTTGCCGATTTATGCCACCTTAG ATGGCAGCGGACCTCTGCTTTTGGCAGTGCAGCTTAATGCCGATCTTCATCCGGCCAAGGATCTCAGTTACAGCCTGTGG GCCATTCGGTTAACCGTGGGATTATTTGTGCTATGGCTTTTCAGTCGCCTGCTGGGACATTACCTCATCAAACCGCTGGC GACGTTGCAACAGGGCACCCGCGCCTTGGCAAGCGGTAAACTCAGTACCCGCATCGGCGAGCACTTTTCGGCGGCTGAAC CTGAGTTTTATCAGCTCGGTCACGACTTTGATGAAATGGCGGATGTGATTGAACGCACCCTCACCACCCAGGAGCGCCTG ATCCGCGACGTGTCCCATGAACTGCGCACCCCGCTTGCCCGGCAAAAGCTGGCCGCTGAATTGCTGGAGAGCGACCTGGC AGACACCTCGCCTTACCTTAAGCGGATCCACGCTGAAAACAGCGAACTCAGCCGCCTGATAGACACACTTCTGGGTTACA GCCGCCTCGCCAGTGGTTATCAGGCCGCGCGCAGCACATCATTTACCCTGCACGAGCTGGCTTGCTCACTTCTGGGGGAT TGCCGCTTTGAAGCGGCGCCAACACAAAGTATCGAGTGGCAGGCTTTGAGCGCCTGCAAGTATATCGCCCTTGAAACCGA TCAAAGTCTGCTGCTGCGGGCGCTGGAAAACCTGGTGCGCAACAGCCTTAAATACGCAGGAACTGAATGTCATATTCAGA TAAGCAGCCACTGCGATGATAGCTGGCTCACTATCACAGTGGAGGATGATGGTCCGGGTATAGATGACACCAAACTCGAG ACCCTGTTTCATCCCTTTACCCGCTTTGATGAGGCCCGTCATGCCAGTCAGGGCGGCTTTGGGCTGGGGCTTGCCATAGT GCGGGAGTGTATGCGTCTGCTCGGCGGCGATGTCTCGGCCGGGCGAAGTGAACTTGGTGGGTTGGAAGTTAAGCTGTTGC TGCCGATGCGGCTTAAAAGGCTGGCCGCTACCGACAAGGCAATTTAG
Upstream 100 bases:
>100_bases TACAGTATAACAATTATGACAAACTTGCCAATCCTCTGGGATCTGAAAAGACAAGGTGTATAATGCGAATCATTTTTATT TATGAGTCTGTGCGATTGTC
Downstream 100 bases:
>100_bases TATAGGTGCATGAATTGCTTTTGGAAGGTGCGCGGATGTCCAGCCTGAGTCCAAGCCGGATTTGGCATATAGTGACCCTC ATTCCCGAGGGCAAGGTGCT
Product: putative two-component system sensor kinase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 468; Mature: 468
Protein sequence:
>468_residues MKLSRHHPFARLQWRLFGYFGSSLLVILLLASLIEAMVLHQLLVLPKETKAKLSMLAQEAEALIKQGSPQAIAQWEAAQS FRLHVINSRLEGVSGRPIHPHFEFKLGFMLGPDQALGDRVQKPIIGLPIYATLDGSGPLLLAVQLNADLHPAKDLSYSLW AIRLTVGLFVLWLFSRLLGHYLIKPLATLQQGTRALASGKLSTRIGEHFSAAEPEFYQLGHDFDEMADVIERTLTTQERL IRDVSHELRTPLARQKLAAELLESDLADTSPYLKRIHAENSELSRLIDTLLGYSRLASGYQAARSTSFTLHELACSLLGD CRFEAAPTQSIEWQALSACKYIALETDQSLLLRALENLVRNSLKYAGTECHIQISSHCDDSWLTITVEDDGPGIDDTKLE TLFHPFTRFDEARHASQGGFGLGLAIVRECMRLLGGDVSAGRSELGGLEVKLLLPMRLKRLAATDKAI
Sequences:
>Translated_468_residues MKLSRHHPFARLQWRLFGYFGSSLLVILLLASLIEAMVLHQLLVLPKETKAKLSMLAQEAEALIKQGSPQAIAQWEAAQS FRLHVINSRLEGVSGRPIHPHFEFKLGFMLGPDQALGDRVQKPIIGLPIYATLDGSGPLLLAVQLNADLHPAKDLSYSLW AIRLTVGLFVLWLFSRLLGHYLIKPLATLQQGTRALASGKLSTRIGEHFSAAEPEFYQLGHDFDEMADVIERTLTTQERL IRDVSHELRTPLARQKLAAELLESDLADTSPYLKRIHAENSELSRLIDTLLGYSRLASGYQAARSTSFTLHELACSLLGD CRFEAAPTQSIEWQALSACKYIALETDQSLLLRALENLVRNSLKYAGTECHIQISSHCDDSWLTITVEDDGPGIDDTKLE TLFHPFTRFDEARHASQGGFGLGLAIVRECMRLLGGDVSAGRSELGGLEVKLLLPMRLKRLAATDKAI >Mature_468_residues MKLSRHHPFARLQWRLFGYFGSSLLVILLLASLIEAMVLHQLLVLPKETKAKLSMLAQEAEALIKQGSPQAIAQWEAAQS FRLHVINSRLEGVSGRPIHPHFEFKLGFMLGPDQALGDRVQKPIIGLPIYATLDGSGPLLLAVQLNADLHPAKDLSYSLW AIRLTVGLFVLWLFSRLLGHYLIKPLATLQQGTRALASGKLSTRIGEHFSAAEPEFYQLGHDFDEMADVIERTLTTQERL IRDVSHELRTPLARQKLAAELLESDLADTSPYLKRIHAENSELSRLIDTLLGYSRLASGYQAARSTSFTLHELACSLLGD CRFEAAPTQSIEWQALSACKYIALETDQSLLLRALENLVRNSLKYAGTECHIQISSHCDDSWLTITVEDDGPGIDDTKLE TLFHPFTRFDEARHASQGGFGLGLAIVRECMRLLGGDVSAGRSELGGLEVKLLLPMRLKRLAATDKAI
Specific function: This protein is involved in several diverse cellular processes, such as the functioning of acetohydroxyacid synthetase I, in the biosynthesis of isoleucine and valine, the TraJ protein activation activity for tra gene expression in F plasmid, and the synt
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 histidine kinase domain [H]
Homologues:
Organism=Escherichia coli, GI1790346, Length=273, Percent_Identity=36.996336996337, Blast_Score=147, Evalue=1e-36, Organism=Escherichia coli, GI1787894, Length=270, Percent_Identity=34.8148148148148, Blast_Score=129, Evalue=3e-31, Organism=Escherichia coli, GI1788393, Length=279, Percent_Identity=30.8243727598566, Blast_Score=122, Evalue=4e-29, Organism=Escherichia coli, GI1789808, Length=311, Percent_Identity=27.9742765273312, Blast_Score=101, Evalue=9e-23, Organism=Escherichia coli, GI1786912, Length=225, Percent_Identity=33.3333333333333, Blast_Score=93, Evalue=4e-20, Organism=Escherichia coli, GI1790551, Length=304, Percent_Identity=28.9473684210526, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI1786783, Length=338, Percent_Identity=25.4437869822485, Blast_Score=80, Evalue=3e-16, Organism=Escherichia coli, GI87082128, Length=279, Percent_Identity=25.089605734767, Blast_Score=78, Evalue=1e-15, Organism=Escherichia coli, GI145693157, Length=241, Percent_Identity=24.4813278008299, Blast_Score=71, Evalue=1e-13, Organism=Escherichia coli, GI1790861, Length=227, Percent_Identity=28.1938325991189, Blast_Score=71, Evalue=2e-13, Organism=Escherichia coli, GI1788279, Length=307, Percent_Identity=27.3615635179153, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1789403, Length=224, Percent_Identity=27.6785714285714, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI87081816, Length=340, Percent_Identity=26.1764705882353, Blast_Score=66, Evalue=4e-12, Organism=Escherichia coli, GI1787374, Length=219, Percent_Identity=28.7671232876712, Blast_Score=66, Evalue=6e-12, Organism=Escherichia coli, GI1786600, Length=219, Percent_Identity=25.1141552511416, Blast_Score=64, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR003660 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 [H]
Pfam domain/function: PF00672 HAMP; PF02518 HATPase_c; PF00512 HisKA [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 51945; Mature: 51945
Theoretical pI: Translated: 6.87; Mature: 6.87
Prosite motif: PS50885 HAMP ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.8 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKLSRHHPFARLQWRLFGYFGSSLLVILLLASLIEAMVLHQLLVLPKETKAKLSMLAQEA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH EALIKQGSPQAIAQWEAAQSFRLHVINSRLEGVSGRPIHPHFEFKLGFMLGPDQALGDRV HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHH QKPIIGLPIYATLDGSGPLLLAVQLNADLHPAKDLSYSLWAIRLTVGLFVLWLFSRLLGH HCCEECCCEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH YLIKPLATLQQGTRALASGKLSTRIGEHFSAAEPEFYQLGHDFDEMADVIERTLTTQERL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHH IRDVSHELRTPLARQKLAAELLESDLADTSPYLKRIHAENSELSRLIDTLLGYSRLASGY HHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH QAARSTSFTLHELACSLLGDCRFEAAPTQSIEWQALSACKYIALETDQSLLLRALENLVR HHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHH NSLKYAGTECHIQISSHCDDSWLTITVEDDGPGIDDTKLETLFHPFTRFDEARHASQGGF HHHHHCCCEEEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC GLGLAIVRECMRLLGGDVSAGRSELGGLEVKLLLPMRLKRLAATDKAI HHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEEECHHHHHHHHHHCCCC >Mature Secondary Structure MKLSRHHPFARLQWRLFGYFGSSLLVILLLASLIEAMVLHQLLVLPKETKAKLSMLAQEA CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH EALIKQGSPQAIAQWEAAQSFRLHVINSRLEGVSGRPIHPHFEFKLGFMLGPDQALGDRV HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEEECCCHHHHHHH QKPIIGLPIYATLDGSGPLLLAVQLNADLHPAKDLSYSLWAIRLTVGLFVLWLFSRLLGH HCCEECCCEEEEECCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH YLIKPLATLQQGTRALASGKLSTRIGEHFSAAEPEFYQLGHDFDEMADVIERTLTTQERL HHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHH IRDVSHELRTPLARQKLAAELLESDLADTSPYLKRIHAENSELSRLIDTLLGYSRLASGY HHHHHHHHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH QAARSTSFTLHELACSLLGDCRFEAAPTQSIEWQALSACKYIALETDQSLLLRALENLVR HHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHEEECCCHHHHHHHHHHHHH NSLKYAGTECHIQISSHCDDSWLTITVEDDGPGIDDTKLETLFHPFTRFDEARHASQGGF HHHHHCCCEEEEEECCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCC GLGLAIVRECMRLLGGDVSAGRSELGGLEVKLLLPMRLKRLAATDKAI HHHHHHHHHHHHHHCCCCCCCHHHHCCEEEEEECHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]