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The map label for this gene is yqfA [H]

Identifier: 119774997

GI number: 119774997

Start: 2267774

End: 2268499

Strand: Direct

Name: yqfA [H]

Synonym: Sama_1862

Alternate gene names: 119774997

Gene position: 2267774-2268499 (Clockwise)

Preceding gene: 119774987

Following gene: 119775001

Centisome position: 52.66

GC content: 53.99

Gene sequence:

>726_bases
ATGCCGCCAATGCAAGCCAGCAGCGTATCAGATACTGCTCCCGTTAATGTCCCCAATGCCCCCGCCGATGCTTCAGGCAA
TGCCAGTACGGCTGCGTATTGTGAGCGGGAAGAGCTGGCCAATACCTTAAGCCATGGCATTGGCGTGCTGGCGGCACTGA
TTGGCACAGTCGCTATGTTGCACGACAGCATTGGCCATTTGAGTGCACTGCAAACTCTCGGCGTTGGCCTCTATGGCCTG
AGTATGGTACTGCTGTTTGCCTGCTCTACCGCTTATCACTGGGCCACATCGCCTACGCTCAAGCGCAAATTCAAATTGTT
TGACCACTGCGCCATTTACCTTTTGATTGCAGGAACCTACACGCCTTTTGTACTCATTACCCTGGAAGGCGCCGGTGTCG
ACTGGGTGCTGGCTGCCATCTGGTTGTTTGCGCTTGGCGGGATTGGATTCAAGCTTTTGTTTTTACATCGCTTTAAAGCG
TTCAGCCTGCTGCTTTACCTTGCCATGGGCTGGTTGTGTGTGGCGGTGCTCGACAAGATGATCGCCGGGCTCAGTGATAC
CGGTTTTACCCTGCTGCTCACCGGCGGCCTGTTTTACAGCCTGGGCGTGGTGTTTTATGCGGTGAAACGCATCCCCTTTA
ACCATGCCATATGGCACCTGTTTGTGCTTGGCGGCGCCATCAGTCACTTCCTGTGTATTTATCTCACTGTGATCCCCAAG
GGCTAA

Upstream 100 bases:

>100_bases
AAAATAATTTAAGCGTACACATGTACTCTTTTGTGGTGTTTGCAGAAAGTGAATGTTAGATTATCGACTCTAATGCCAAG
CCCAAGCTGACGAGTTCACC

Downstream 100 bases:

>100_bases
CGGATAAAAGCCAAAGCACCAAAGGGCATAAAGGTGAGTCACAAACGCCAGTCCTCACCATACCAGTGATTTTACCCAAC
CACGTATGTCCGCCATCATT

Product: hemolysin III family channel protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 241; Mature: 240

Protein sequence:

>241_residues
MPPMQASSVSDTAPVNVPNAPADASGNASTAAYCEREELANTLSHGIGVLAALIGTVAMLHDSIGHLSALQTLGVGLYGL
SMVLLFACSTAYHWATSPTLKRKFKLFDHCAIYLLIAGTYTPFVLITLEGAGVDWVLAAIWLFALGGIGFKLLFLHRFKA
FSLLLYLAMGWLCVAVLDKMIAGLSDTGFTLLLTGGLFYSLGVVFYAVKRIPFNHAIWHLFVLGGAISHFLCIYLTVIPK
G

Sequences:

>Translated_241_residues
MPPMQASSVSDTAPVNVPNAPADASGNASTAAYCEREELANTLSHGIGVLAALIGTVAMLHDSIGHLSALQTLGVGLYGL
SMVLLFACSTAYHWATSPTLKRKFKLFDHCAIYLLIAGTYTPFVLITLEGAGVDWVLAAIWLFALGGIGFKLLFLHRFKA
FSLLLYLAMGWLCVAVLDKMIAGLSDTGFTLLLTGGLFYSLGVVFYAVKRIPFNHAIWHLFVLGGAISHFLCIYLTVIPK
G
>Mature_240_residues
PPMQASSVSDTAPVNVPNAPADASGNASTAAYCEREELANTLSHGIGVLAALIGTVAMLHDSIGHLSALQTLGVGLYGLS
MVLLFACSTAYHWATSPTLKRKFKLFDHCAIYLLIAGTYTPFVLITLEGAGVDWVLAAIWLFALGGIGFKLLFLHRFKAF
SLLLYLAMGWLCVAVLDKMIAGLSDTGFTLLLTGGLFYSLGVVFYAVKRIPFNHAIWHLFVLGGAISHFLCIYLTVIPKG

Specific function: Unknown

COG id: COG1272

COG function: function code R; Predicted membrane protein, hemolysin III homolog

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0073 (Hly-III) family [H]

Homologues:

Organism=Homo sapiens, GI154759275, Length=206, Percent_Identity=32.5242718446602, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI52630445, Length=222, Percent_Identity=32.8828828828829, Blast_Score=97, Evalue=1e-20,
Organism=Homo sapiens, GI154759277, Length=231, Percent_Identity=29.4372294372294, Blast_Score=84, Evalue=9e-17,
Organism=Escherichia coli, GI1789266, Length=206, Percent_Identity=51.4563106796116, Blast_Score=191, Evalue=4e-50,
Organism=Caenorhabditis elegans, GI71996356, Length=241, Percent_Identity=32.3651452282158, Blast_Score=103, Evalue=7e-23,
Organism=Drosophila melanogaster, GI24640324, Length=234, Percent_Identity=32.9059829059829, Blast_Score=97, Evalue=1e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004254
- InterPro:   IPR005744 [H]

Pfam domain/function: PF03006 HlyIII [H]

EC number: NA

Molecular weight: Translated: 25828; Mature: 25697

Theoretical pI: Translated: 7.94; Mature: 7.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.1 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.6 %Cys+Met (Translated Protein)
2.1 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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C
>Mature Secondary Structure 
PPMQASSVSDTAPVNVPNAPADASGNASTAAYCEREELANTLSHGIGVLAALIGTVAML
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
HDSIGHLSALQTLGVGLYGLSMVLLFACSTAYHWATSPTLKRKFKLFDHCAIYLLIAGTY
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCC
TPFVLITLEGAGVDWVLAAIWLFALGGIGFKLLFLHRFKAFSLLLYLAMGWLCVAVLDKM
CCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IAGLSDTGFTLLLTGGLFYSLGVVFYAVKRIPFNHAIWHLFVLGGAISHFLCIYLTVIPK
HHCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]