| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774989
Identifier: 119774989
GI number: 119774989
Start: 2258939
End: 2259190
Strand: Reverse
Name: 119774989
Synonym: Sama_1854
Alternate gene names: NA
Gene position: 2259190-2258939 (Counterclockwise)
Preceding gene: 119774990
Following gene: 119774988
Centisome position: 52.46
GC content: 53.17
Gene sequence:
>252_bases ATGCAAATCCCACCTGCATCCGTATCGGGTATCAATGGCTTTAACAGCGCTCAAAGTGGGTTGACTCAGGCAACCATCGA TGTGGCGCGCAGCGAGCCTGCCCAACAAAGTGCCGAGCTCAAGGCTGAAGCACCTGATAAAACCGACGCCCTGGTCAAAG CGACCCAGTCGGTTAATCAGGCTGAGGCATCGGCCGAAGTGATTGAAACGGCCGATGAGACAATTGGCACCATCATAGAC ATCAAAGTGTAA
Upstream 100 bases:
>100_bases GACGGTCTACAGTGCATTTTTGCTGGCGTTTCCCGCTTTTTTGGCTAATAATTGACCCGTTCATCAAAAGCCATTTGTGA AACTTATTCTGGAGGAAGCC
Downstream 100 bases:
>100_bases TTGCCATGTCCTCCCCGGCGCTGTCTGTCAATCATGCGGCGTCAAACGGTGTTGCCCGGCCATCTTTCGCCGGGCATCCT GATACCGCTGAGACTGCGAG
Product: methyl-accepting chemotaxis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 83; Mature: 83
Protein sequence:
>83_residues MQIPPASVSGINGFNSAQSGLTQATIDVARSEPAQQSAELKAEAPDKTDALVKATQSVNQAEASAEVIETADETIGTIID IKV
Sequences:
>Translated_83_residues MQIPPASVSGINGFNSAQSGLTQATIDVARSEPAQQSAELKAEAPDKTDALVKATQSVNQAEASAEVIETADETIGTIID IKV >Mature_83_residues MQIPPASVSGINGFNSAQSGLTQATIDVARSEPAQQSAELKAEAPDKTDALVKATQSVNQAEASAEVIETADETIGTIID IKV
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8539; Mature: 8539
Theoretical pI: Translated: 3.92; Mature: 3.92
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQIPPASVSGINGFNSAQSGLTQATIDVARSEPAQQSAELKAEAPDKTDALVKATQSVNQ CCCCCCCCCCCCCCCCHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AEASAEVIETADETIGTIIDIKV HHHHHHHHHHHHHCCCCEEEECC >Mature Secondary Structure MQIPPASVSGINGFNSAQSGLTQATIDVARSEPAQQSAELKAEAPDKTDALVKATQSVNQ CCCCCCCCCCCCCCCCHHCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHH AEASAEVIETADETIGTIIDIKV HHHHHHHHHHHHHCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA