| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774988
Identifier: 119774988
GI number: 119774988
Start: 2257149
End: 2258933
Strand: Reverse
Name: 119774988
Synonym: Sama_1853
Alternate gene names: NA
Gene position: 2258933-2257149 (Counterclockwise)
Preceding gene: 119774989
Following gene: 119774979
Centisome position: 52.46
GC content: 54.23
Gene sequence:
>1785_bases ATGTCCTCCCCGGCGCTGTCTGTCAATCATGCGGCGTCAAACGGTGTTGCCCGGCCATCTTTCGCCGGGCATCCTGATAC CGCTGAGACTGCGAGAAATTCGTTCTCGTCGGCGCCCCTTGTATCCGAAGTCTCACTAAAGTCCCCATCAAATCATGCTT CTTCCCACTCAGTGTCTTTCCATAGTGGGGGCGGTGTTTCTACGCCAGCTATTTCCCACGGAGCGCCTTCATCCGGCATG ACACAGACTGCGGCGTCAGGTGGCGTAGCGTCAGTTTCAGTGGGCACTAACCAGATATTAAAATCATCACCGTCTTCAGC GACGTTGCCATCAGCACCGGTCGCGACTGGAACGGCTGGACAGGTCAAACACAGGGCGTCAGGTTCACTGCAAGGAGGCT CAGCACCCACTGCCTCGGCTGCCACTCCCGGTTTTAATCTGATTACTGGCGCGCAGAGTATCGATGCGTTGCCGGGTAGA ACCCAATTTGCTTCAGCCATTTCTGCTCAAGGTTATTCTCCAGTGAATCAAGGTTCTGATGCTCGGTTCAGTCAGGTTCA GAACACTGGACTCACAGGTGCTGAATTTACAAGCTCGGATGAGCACTCAGTCGCAGATATCTTTATTTCCCCAAATCAAT CTTCTGTTGATGGTGTCACAACGAGTAGTGCTGAAACGGGGCGCGTTGTCAGTCAAGGAGACGGTGGAGGCGGTTCGAAC GCAGTTTTTGATACAGGTACGCCTGTGGGTGTTCAGTTTGCACGAGAAGACGCGTCAAATTCAGCTGTCGCTGCCCAGGA AGCTGAGAAGGCTGCCAAAGAAGCAAAGCAACAAAAGCTTGCTGAGGCGCTGGGTGGAGAGCGGGAGCCCTTCTCTGAAC AAAAGGTTGCCAGGCAGCAAGTGGAACAAGACAGCAATGCTCAGGCAATGGCCCGCGAAAACGACATCGAGCGTCGCGAG CAGGTAAAAATACGTCAGCAGGAGATGGAGGTGCGTCAGCTTGAAGCCAGACAAGCGGAAGTACTGGCACATGAGAGAGC CCACGCCGCCGTTGGTGGACAATTTGCCCGCGCGCCCAATTTTGAATATGAGCTTGGTCCTGATGGTAAGAGATATGCCA CGGGGGGAGAGGTGTCGATTGATATTGCCAGCGTCCAAGGCAACCCCCAGGCGACAATCAACAAGATGCAGCAGGTATAT GCCGCAGCCATGGCGCCGGTAAATCCGTCGCAAGCGGATCTGCGTGTGGCGGCTGAAGCACTCAGGAACATTGAGTTGGC CAAGGACGAATTGGCGTCCGAGCGGCTGGCGGCAATGCCCACTCAGGACGAAATTTCCCCATTATTGGACGCTCAAAACG CCATTGATGAAGTGCCGGTGTTCGAGCCGGTTACCCCTTCTTTGGGCACCAACCTGGATAAATCCGGCGCTTTGGGCAAA GAGCAGAGTGACAGCGGCTTTGTCGATGCATTGTCGGCACGTATTACCGCCGCTTTGGCTCAAACCCTTGAAAAGGATAG TGAGGGAAATAAAACAGAGAACCAGGGTAACGACGACAAAGGCACTGAGACTAGCCTAGTTGCCGTCGATACCGGGTCGG ATGGCTCAGGCTCGGCTTCTGATGGCTATGGCCAAACACTTGATAATTCACGCACCACGGATATCAGTAAGCTTGGGCCA CCGAGAGCGATCCTTGCGTATCTCGACACCAACGAGAAGACACAAATCGAAAACGATAAGTCCCAACCTAATAAGGCGGC ATCATCGCTACTGGCGCTGGCATGA
Upstream 100 bases:
>100_bases AAGCGACCCAGTCGGTTAATCAGGCTGAGGCATCGGCCGAAGTGATTGAAACGGCCGATGAGACAATTGGCACCATCATA GACATCAAAGTGTAATTGCC
Downstream 100 bases:
>100_bases GATACCATGCTGGGCAAGAATGAGCAGCTCCAACGCCTCACCCGCAGGCCCCTGATCGTCTCTGCTAGGGACAACCAGAT TAATGGGGATCTTCCGGCTT
Product: hypothetical protein
Products: NA
Alternate protein names: Protein-Glutamate O-Methyltransferase
Number of amino acids: Translated: 594; Mature: 593
Protein sequence:
>594_residues MSSPALSVNHAASNGVARPSFAGHPDTAETARNSFSSAPLVSEVSLKSPSNHASSHSVSFHSGGGVSTPAISHGAPSSGM TQTAASGGVASVSVGTNQILKSSPSSATLPSAPVATGTAGQVKHRASGSLQGGSAPTASAATPGFNLITGAQSIDALPGR TQFASAISAQGYSPVNQGSDARFSQVQNTGLTGAEFTSSDEHSVADIFISPNQSSVDGVTTSSAETGRVVSQGDGGGGSN AVFDTGTPVGVQFAREDASNSAVAAQEAEKAAKEAKQQKLAEALGGEREPFSEQKVARQQVEQDSNAQAMARENDIERRE QVKIRQQEMEVRQLEARQAEVLAHERAHAAVGGQFARAPNFEYELGPDGKRYATGGEVSIDIASVQGNPQATINKMQQVY AAAMAPVNPSQADLRVAAEALRNIELAKDELASERLAAMPTQDEISPLLDAQNAIDEVPVFEPVTPSLGTNLDKSGALGK EQSDSGFVDALSARITAALAQTLEKDSEGNKTENQGNDDKGTETSLVAVDTGSDGSGSASDGYGQTLDNSRTTDISKLGP PRAILAYLDTNEKTQIENDKSQPNKAASSLLALA
Sequences:
>Translated_594_residues MSSPALSVNHAASNGVARPSFAGHPDTAETARNSFSSAPLVSEVSLKSPSNHASSHSVSFHSGGGVSTPAISHGAPSSGM TQTAASGGVASVSVGTNQILKSSPSSATLPSAPVATGTAGQVKHRASGSLQGGSAPTASAATPGFNLITGAQSIDALPGR TQFASAISAQGYSPVNQGSDARFSQVQNTGLTGAEFTSSDEHSVADIFISPNQSSVDGVTTSSAETGRVVSQGDGGGGSN AVFDTGTPVGVQFAREDASNSAVAAQEAEKAAKEAKQQKLAEALGGEREPFSEQKVARQQVEQDSNAQAMARENDIERRE QVKIRQQEMEVRQLEARQAEVLAHERAHAAVGGQFARAPNFEYELGPDGKRYATGGEVSIDIASVQGNPQATINKMQQVY AAAMAPVNPSQADLRVAAEALRNIELAKDELASERLAAMPTQDEISPLLDAQNAIDEVPVFEPVTPSLGTNLDKSGALGK EQSDSGFVDALSARITAALAQTLEKDSEGNKTENQGNDDKGTETSLVAVDTGSDGSGSASDGYGQTLDNSRTTDISKLGP PRAILAYLDTNEKTQIENDKSQPNKAASSLLALA >Mature_593_residues SSPALSVNHAASNGVARPSFAGHPDTAETARNSFSSAPLVSEVSLKSPSNHASSHSVSFHSGGGVSTPAISHGAPSSGMT QTAASGGVASVSVGTNQILKSSPSSATLPSAPVATGTAGQVKHRASGSLQGGSAPTASAATPGFNLITGAQSIDALPGRT QFASAISAQGYSPVNQGSDARFSQVQNTGLTGAEFTSSDEHSVADIFISPNQSSVDGVTTSSAETGRVVSQGDGGGGSNA VFDTGTPVGVQFAREDASNSAVAAQEAEKAAKEAKQQKLAEALGGEREPFSEQKVARQQVEQDSNAQAMARENDIERREQ VKIRQQEMEVRQLEARQAEVLAHERAHAAVGGQFARAPNFEYELGPDGKRYATGGEVSIDIASVQGNPQATINKMQQVYA AAMAPVNPSQADLRVAAEALRNIELAKDELASERLAAMPTQDEISPLLDAQNAIDEVPVFEPVTPSLGTNLDKSGALGKE QSDSGFVDALSARITAALAQTLEKDSEGNKTENQGNDDKGTETSLVAVDTGSDGSGSASDGYGQTLDNSRTTDISKLGPP RAILAYLDTNEKTQIENDKSQPNKAASSLLALA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 61027; Mature: 60896
Theoretical pI: Translated: 4.58; Mature: 4.58
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSSPALSVNHAASNGVARPSFAGHPDTAETARNSFSSAPLVSEVSLKSPSNHASSHSVSF CCCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHEEECCCCCCCCCCCEEEE HSGGGVSTPAISHGAPSSGMTQTAASGGVASVSVGTNQILKSSPSSATLPSAPVATGTAG ECCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCH QVKHRASGSLQGGSAPTASAATPGFNLITGAQSIDALPGRTQFASAISAQGYSPVNQGSD HHHHHCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCHHHHHHHHHHCCCCCCCCCCC ARFSQVQNTGLTGAEFTSSDEHSVADIFISPNQSSVDGVTTSSAETGRVVSQGDGGGGSN HHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC AVFDTGTPVGVQFAREDASNSAVAAQEAEKAAKEAKQQKLAEALGGEREPFSEQKVARQQ CEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH VEQDSNAQAMARENDIERREQVKIRQQEMEVRQLEARQAEVLAHERAHAAVGGQFARAPN HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC FEYELGPDGKRYATGGEVSIDIASVQGNPQATINKMQQVYAAAMAPVNPSQADLRVAAEA CCEEECCCCCEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH LRNIELAKDELASERLAAMPTQDEISPLLDAQNAIDEVPVFEPVTPSLGTNLDKSGALGK HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCC EQSDSGFVDALSARITAALAQTLEKDSEGNKTENQGNDDKGTETSLVAVDTGSDGSGSAS CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC DGYGQTLDNSRTTDISKLGPPRAILAYLDTNEKTQIENDKSQPNKAASSLLALA CCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC >Mature Secondary Structure SSPALSVNHAASNGVARPSFAGHPDTAETARNSFSSAPLVSEVSLKSPSNHASSHSVSF CCCCCEECCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHEEECCCCCCCCCCCEEEE HSGGGVSTPAISHGAPSSGMTQTAASGGVASVSVGTNQILKSSPSSATLPSAPVATGTAG ECCCCCCCCCCCCCCCCCCCCHHHCCCCEEEEECCHHHHHHCCCCCCCCCCCCCCCCCCH QVKHRASGSLQGGSAPTASAATPGFNLITGAQSIDALPGRTQFASAISAQGYSPVNQGSD HHHHHCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCHHHHHHHHHHCCCCCCCCCCC ARFSQVQNTGLTGAEFTSSDEHSVADIFISPNQSSVDGVTTSSAETGRVVSQGDGGGGSN HHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCEEECCCCCCCCC AVFDTGTPVGVQFAREDASNSAVAAQEAEKAAKEAKQQKLAEALGGEREPFSEQKVARQQ CEEECCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH VEQDSNAQAMARENDIERREQVKIRQQEMEVRQLEARQAEVLAHERAHAAVGGQFARAPN HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHCCCC FEYELGPDGKRYATGGEVSIDIASVQGNPQATINKMQQVYAAAMAPVNPSQADLRVAAEA CCEEECCCCCEEECCCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH LRNIELAKDELASERLAAMPTQDEISPLLDAQNAIDEVPVFEPVTPSLGTNLDKSGALGK HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCC EQSDSGFVDALSARITAALAQTLEKDSEGNKTENQGNDDKGTETSLVAVDTGSDGSGSAS CCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC DGYGQTLDNSRTTDISKLGPPRAILAYLDTNEKTQIENDKSQPNKAASSLLALA CCCCCCCCCCCCCCHHHCCCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA