Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774985

Identifier: 119774985

GI number: 119774985

Start: 2253216

End: 2254880

Strand: Direct

Name: 119774985

Synonym: Sama_1850

Alternate gene names: NA

Gene position: 2253216-2254880 (Clockwise)

Preceding gene: 119774984

Following gene: 119774986

Centisome position: 52.33

GC content: 52.67

Gene sequence:

>1665_bases
ATGCCAAAGTGCATTTCGGCGCTCACGCTGACCGCTAGTCTCTGGTGCAGTACTGCGATTGCCAATCCTGTGATGCTGCT
GGCGGAGCAATGCCAGCAGCTGACCCTGGCAAGTGACTTCGACGCAGCCTTCAACCCGGAAAGTCTTGACCTCATTCAGG
ATCCACTCTCGGCTGCAGTTCAAGCCACGCAATTTGAACGGCTCAGCCTGGGCTTTAACAATATATCGTCCCGGGTCAGC
CTTTACCTTAGTGAGCCACTGTCGAAAGACGGCCGCGATATCCTGGTAAACTGCCAAATCCGCCTCGCTGATGAAATAGA
CCAAATCACGCAAAAGGTTGCGTTTAAGCAGCTCAGTCTTCGCTTGCAAACCCATGGCGAAGGCGATACGGCAGCGTTGG
GGCAAGCAATGTATAGGCTGGCGAGTATGCGATTGTCGGCTACTGACAAAGCCCGATTGCACACCGCAGAGGCCAGTTTT
ATGACTGGCCACAAGCGCGGAGAATTCAGTTTACAGCCCACTGACGAATGCCAAATTGTCAGTGAAAATAAATCATCAAA
AAACCAAATAAGCAATGCTGTTGCGGTTTATTTGAGCGAACAAATCAATGAAGAATGCCGCGAGAGCGCTTGGAAATCCT
ATCAAATTAGAGCGCGCGAACTGAGCCTTAGTGCCTTGAATGTCATTCACGACATAAGACAGTCACAGGCCATTCAGCAG
GGCTTTGCAGATTACGTAAGTCTTGCACTCAACAACACCTTCTTCGCCACCCCGGACACGGCGCTCGCCTTCTTGCAGGC
CACCCGTCCTGATAAGACATTGGCGCCCTGGAACATAGGCCGGGCACTGAAACAGGCCGACGGCAACCGCACTCCCATTG
ACAGCAACTGGCTGTTAAACACCTTGCTCAATGAGTTACAAACATTCGGCATTCGGTTCGACTGGCTCAGCGATACTCAT
TTACGGCTCTGGCTTAATAACAGACTTCTTGGGGAGCTTGCCATTGCCACAGGTAAAGACCCGGACTTTCAGCTCACCCG
CCCAGGTATTTTTACACGCCAGTTCAATCAGGGCCTGTTAATCCGGCCTGATGTGTTAAAGGGTCGCAGCGCCGCGGCGG
ATTTTATCCATGCTTTTGCCAGGGCCCTTGCCAATATGACGCAGGTAGAGCGCCACTATTTGCTGGCGAGGCAAAGTGAA
TATGATGACAGTCGGGCGCTTGCAGCCAACTGGCTGGCACTGATACTGGAAAACAAGCTCAGTAGCCGATTGCCGGCGGC
CACGCCAAGGGAAGCGATAGTCGACGCCCACCGCCTGGCCCAAAACTACTATCGCTCGGCGTTGGCACTGGATTTCTATC
GATATCAACCTGCGGGAATAGACAGATTTGCAGAACATTTTGAGGGGCAATGGCCGAGTGTAGACGCTCAGTACCAAAGT
ACCATAGCACTCGTGCAACAAGGCCCCTTGCTTTACCGCGAGTTGTGGCAACAAAGACTCTCCCGCTTTATCACCGACCA
CCAGCAGATGACCGATGAACACGCCTTTGAACTGCTGCTGGTCAATCCAAATCGTCAATCTTTGATGCAGCAACTCACCT
CCCTCCTCGGCCGCAGTTACACGGCCGACGAACTGATAAGGAGTATTGCCGATGACCTTCGCTAG

Upstream 100 bases:

>100_bases
CTCGCCATACAAATCGCCAACGGCAAGGGATTGCTGCCAAGACTTAAACACGTGGAATCGCTCGGCAACAAGTTTATGGA
TGTGAATGACAGGGTGGCCT

Downstream 100 bases:

>100_bases
TAAAACCTGCGCCTTGTTACTCTGTGCCAGCCTTTTACCCGCGGCCAATGCCGCAGACAGCAAGGCCGAAGATGCCAAAC
ACAGCAGCAACAACGCTACC

Product: hypothetical protein

Products: NA

Alternate protein names: Peptidase M3A And M3B Thimet/Oligopeptidase F

Number of amino acids: Translated: 554; Mature: 553

Protein sequence:

>554_residues
MPKCISALTLTASLWCSTAIANPVMLLAEQCQQLTLASDFDAAFNPESLDLIQDPLSAAVQATQFERLSLGFNNISSRVS
LYLSEPLSKDGRDILVNCQIRLADEIDQITQKVAFKQLSLRLQTHGEGDTAALGQAMYRLASMRLSATDKARLHTAEASF
MTGHKRGEFSLQPTDECQIVSENKSSKNQISNAVAVYLSEQINEECRESAWKSYQIRARELSLSALNVIHDIRQSQAIQQ
GFADYVSLALNNTFFATPDTALAFLQATRPDKTLAPWNIGRALKQADGNRTPIDSNWLLNTLLNELQTFGIRFDWLSDTH
LRLWLNNRLLGELAIATGKDPDFQLTRPGIFTRQFNQGLLIRPDVLKGRSAAADFIHAFARALANMTQVERHYLLARQSE
YDDSRALAANWLALILENKLSSRLPAATPREAIVDAHRLAQNYYRSALALDFYRYQPAGIDRFAEHFEGQWPSVDAQYQS
TIALVQQGPLLYRELWQQRLSRFITDHQQMTDEHAFELLLVNPNRQSLMQQLTSLLGRSYTADELIRSIADDLR

Sequences:

>Translated_554_residues
MPKCISALTLTASLWCSTAIANPVMLLAEQCQQLTLASDFDAAFNPESLDLIQDPLSAAVQATQFERLSLGFNNISSRVS
LYLSEPLSKDGRDILVNCQIRLADEIDQITQKVAFKQLSLRLQTHGEGDTAALGQAMYRLASMRLSATDKARLHTAEASF
MTGHKRGEFSLQPTDECQIVSENKSSKNQISNAVAVYLSEQINEECRESAWKSYQIRARELSLSALNVIHDIRQSQAIQQ
GFADYVSLALNNTFFATPDTALAFLQATRPDKTLAPWNIGRALKQADGNRTPIDSNWLLNTLLNELQTFGIRFDWLSDTH
LRLWLNNRLLGELAIATGKDPDFQLTRPGIFTRQFNQGLLIRPDVLKGRSAAADFIHAFARALANMTQVERHYLLARQSE
YDDSRALAANWLALILENKLSSRLPAATPREAIVDAHRLAQNYYRSALALDFYRYQPAGIDRFAEHFEGQWPSVDAQYQS
TIALVQQGPLLYRELWQQRLSRFITDHQQMTDEHAFELLLVNPNRQSLMQQLTSLLGRSYTADELIRSIADDLR
>Mature_553_residues
PKCISALTLTASLWCSTAIANPVMLLAEQCQQLTLASDFDAAFNPESLDLIQDPLSAAVQATQFERLSLGFNNISSRVSL
YLSEPLSKDGRDILVNCQIRLADEIDQITQKVAFKQLSLRLQTHGEGDTAALGQAMYRLASMRLSATDKARLHTAEASFM
TGHKRGEFSLQPTDECQIVSENKSSKNQISNAVAVYLSEQINEECRESAWKSYQIRARELSLSALNVIHDIRQSQAIQQG
FADYVSLALNNTFFATPDTALAFLQATRPDKTLAPWNIGRALKQADGNRTPIDSNWLLNTLLNELQTFGIRFDWLSDTHL
RLWLNNRLLGELAIATGKDPDFQLTRPGIFTRQFNQGLLIRPDVLKGRSAAADFIHAFARALANMTQVERHYLLARQSEY
DDSRALAANWLALILENKLSSRLPAATPREAIVDAHRLAQNYYRSALALDFYRYQPAGIDRFAEHFEGQWPSVDAQYQST
IALVQQGPLLYRELWQQRLSRFITDHQQMTDEHAFELLLVNPNRQSLMQQLTSLLGRSYTADELIRSIADDLR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 62453; Mature: 62322

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPKCISALTLTASLWCSTAIANPVMLLAEQCQQLTLASDFDAAFNPESLDLIQDPLSAAV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
QATQFERLSLGFNNISSRVSLYLSEPLSKDGRDILVNCQIRLADEIDQITQKVAFKQLSL
HHHHHHHHHCCHHHHHHHHEEEECCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHH
RLQTHGEGDTAALGQAMYRLASMRLSATDKARLHTAEASFMTGHKRGEFSLQPTDECQIV
HEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHEEHHHHHHCCCCCCCCCCCCCCCCEEE
SENKSSKNQISNAVAVYLSEQINEECRESAWKSYQIRARELSLSALNVIHDIRQSQAIQQ
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFADYVSLALNNTFFATPDTALAFLQATRPDKTLAPWNIGRALKQADGNRTPIDSNWLLN
HHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHH
TLLNELQTFGIRFDWLSDTHLRLWLNNRLLGELAIATGKDPDFQLTRPGIFTRQFNQGLL
HHHHHHHHHCEEEEECCCCEEEEEECCCHHHHHHEECCCCCCCEEECCCCCHHHCCCCCE
IRPDVLKGRSAAADFIHAFARALANMTQVERHYLLARQSEYDDSRALAANWLALILENKL
ECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
SSRLPAATPREAIVDAHRLAQNYYRSALALDFYRYQPAGIDRFAEHFEGQWPSVDAQYQS
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHH
TIALVQQGPLLYRELWQQRLSRFITDHQQMTDEHAFELLLVNPNRQSLMQQLTSLLGRSY
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHCCEEEEEECCCHHHHHHHHHHHHCCCC
TADELIRSIADDLR
CHHHHHHHHHHHCC
>Mature Secondary Structure 
PKCISALTLTASLWCSTAIANPVMLLAEQCQQLTLASDFDAAFNPESLDLIQDPLSAAV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
QATQFERLSLGFNNISSRVSLYLSEPLSKDGRDILVNCQIRLADEIDQITQKVAFKQLSL
HHHHHHHHHCCHHHHHHHHEEEECCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHH
RLQTHGEGDTAALGQAMYRLASMRLSATDKARLHTAEASFMTGHKRGEFSLQPTDECQIV
HEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHEEHHHHHHCCCCCCCCCCCCCCCCEEE
SENKSSKNQISNAVAVYLSEQINEECRESAWKSYQIRARELSLSALNVIHDIRQSQAIQQ
ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GFADYVSLALNNTFFATPDTALAFLQATRPDKTLAPWNIGRALKQADGNRTPIDSNWLLN
HHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHH
TLLNELQTFGIRFDWLSDTHLRLWLNNRLLGELAIATGKDPDFQLTRPGIFTRQFNQGLL
HHHHHHHHHCEEEEECCCCEEEEEECCCHHHHHHEECCCCCCCEEECCCCCHHHCCCCCE
IRPDVLKGRSAAADFIHAFARALANMTQVERHYLLARQSEYDDSRALAANWLALILENKL
ECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
SSRLPAATPREAIVDAHRLAQNYYRSALALDFYRYQPAGIDRFAEHFEGQWPSVDAQYQS
HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHH
TIALVQQGPLLYRELWQQRLSRFITDHQQMTDEHAFELLLVNPNRQSLMQQLTSLLGRSY
HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHCCEEEEEECCCHHHHHHHHHHHHCCCC
TADELIRSIADDLR
CHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA