| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774985
Identifier: 119774985
GI number: 119774985
Start: 2253216
End: 2254880
Strand: Direct
Name: 119774985
Synonym: Sama_1850
Alternate gene names: NA
Gene position: 2253216-2254880 (Clockwise)
Preceding gene: 119774984
Following gene: 119774986
Centisome position: 52.33
GC content: 52.67
Gene sequence:
>1665_bases ATGCCAAAGTGCATTTCGGCGCTCACGCTGACCGCTAGTCTCTGGTGCAGTACTGCGATTGCCAATCCTGTGATGCTGCT GGCGGAGCAATGCCAGCAGCTGACCCTGGCAAGTGACTTCGACGCAGCCTTCAACCCGGAAAGTCTTGACCTCATTCAGG ATCCACTCTCGGCTGCAGTTCAAGCCACGCAATTTGAACGGCTCAGCCTGGGCTTTAACAATATATCGTCCCGGGTCAGC CTTTACCTTAGTGAGCCACTGTCGAAAGACGGCCGCGATATCCTGGTAAACTGCCAAATCCGCCTCGCTGATGAAATAGA CCAAATCACGCAAAAGGTTGCGTTTAAGCAGCTCAGTCTTCGCTTGCAAACCCATGGCGAAGGCGATACGGCAGCGTTGG GGCAAGCAATGTATAGGCTGGCGAGTATGCGATTGTCGGCTACTGACAAAGCCCGATTGCACACCGCAGAGGCCAGTTTT ATGACTGGCCACAAGCGCGGAGAATTCAGTTTACAGCCCACTGACGAATGCCAAATTGTCAGTGAAAATAAATCATCAAA AAACCAAATAAGCAATGCTGTTGCGGTTTATTTGAGCGAACAAATCAATGAAGAATGCCGCGAGAGCGCTTGGAAATCCT ATCAAATTAGAGCGCGCGAACTGAGCCTTAGTGCCTTGAATGTCATTCACGACATAAGACAGTCACAGGCCATTCAGCAG GGCTTTGCAGATTACGTAAGTCTTGCACTCAACAACACCTTCTTCGCCACCCCGGACACGGCGCTCGCCTTCTTGCAGGC CACCCGTCCTGATAAGACATTGGCGCCCTGGAACATAGGCCGGGCACTGAAACAGGCCGACGGCAACCGCACTCCCATTG ACAGCAACTGGCTGTTAAACACCTTGCTCAATGAGTTACAAACATTCGGCATTCGGTTCGACTGGCTCAGCGATACTCAT TTACGGCTCTGGCTTAATAACAGACTTCTTGGGGAGCTTGCCATTGCCACAGGTAAAGACCCGGACTTTCAGCTCACCCG CCCAGGTATTTTTACACGCCAGTTCAATCAGGGCCTGTTAATCCGGCCTGATGTGTTAAAGGGTCGCAGCGCCGCGGCGG ATTTTATCCATGCTTTTGCCAGGGCCCTTGCCAATATGACGCAGGTAGAGCGCCACTATTTGCTGGCGAGGCAAAGTGAA TATGATGACAGTCGGGCGCTTGCAGCCAACTGGCTGGCACTGATACTGGAAAACAAGCTCAGTAGCCGATTGCCGGCGGC CACGCCAAGGGAAGCGATAGTCGACGCCCACCGCCTGGCCCAAAACTACTATCGCTCGGCGTTGGCACTGGATTTCTATC GATATCAACCTGCGGGAATAGACAGATTTGCAGAACATTTTGAGGGGCAATGGCCGAGTGTAGACGCTCAGTACCAAAGT ACCATAGCACTCGTGCAACAAGGCCCCTTGCTTTACCGCGAGTTGTGGCAACAAAGACTCTCCCGCTTTATCACCGACCA CCAGCAGATGACCGATGAACACGCCTTTGAACTGCTGCTGGTCAATCCAAATCGTCAATCTTTGATGCAGCAACTCACCT CCCTCCTCGGCCGCAGTTACACGGCCGACGAACTGATAAGGAGTATTGCCGATGACCTTCGCTAG
Upstream 100 bases:
>100_bases CTCGCCATACAAATCGCCAACGGCAAGGGATTGCTGCCAAGACTTAAACACGTGGAATCGCTCGGCAACAAGTTTATGGA TGTGAATGACAGGGTGGCCT
Downstream 100 bases:
>100_bases TAAAACCTGCGCCTTGTTACTCTGTGCCAGCCTTTTACCCGCGGCCAATGCCGCAGACAGCAAGGCCGAAGATGCCAAAC ACAGCAGCAACAACGCTACC
Product: hypothetical protein
Products: NA
Alternate protein names: Peptidase M3A And M3B Thimet/Oligopeptidase F
Number of amino acids: Translated: 554; Mature: 553
Protein sequence:
>554_residues MPKCISALTLTASLWCSTAIANPVMLLAEQCQQLTLASDFDAAFNPESLDLIQDPLSAAVQATQFERLSLGFNNISSRVS LYLSEPLSKDGRDILVNCQIRLADEIDQITQKVAFKQLSLRLQTHGEGDTAALGQAMYRLASMRLSATDKARLHTAEASF MTGHKRGEFSLQPTDECQIVSENKSSKNQISNAVAVYLSEQINEECRESAWKSYQIRARELSLSALNVIHDIRQSQAIQQ GFADYVSLALNNTFFATPDTALAFLQATRPDKTLAPWNIGRALKQADGNRTPIDSNWLLNTLLNELQTFGIRFDWLSDTH LRLWLNNRLLGELAIATGKDPDFQLTRPGIFTRQFNQGLLIRPDVLKGRSAAADFIHAFARALANMTQVERHYLLARQSE YDDSRALAANWLALILENKLSSRLPAATPREAIVDAHRLAQNYYRSALALDFYRYQPAGIDRFAEHFEGQWPSVDAQYQS TIALVQQGPLLYRELWQQRLSRFITDHQQMTDEHAFELLLVNPNRQSLMQQLTSLLGRSYTADELIRSIADDLR
Sequences:
>Translated_554_residues MPKCISALTLTASLWCSTAIANPVMLLAEQCQQLTLASDFDAAFNPESLDLIQDPLSAAVQATQFERLSLGFNNISSRVS LYLSEPLSKDGRDILVNCQIRLADEIDQITQKVAFKQLSLRLQTHGEGDTAALGQAMYRLASMRLSATDKARLHTAEASF MTGHKRGEFSLQPTDECQIVSENKSSKNQISNAVAVYLSEQINEECRESAWKSYQIRARELSLSALNVIHDIRQSQAIQQ GFADYVSLALNNTFFATPDTALAFLQATRPDKTLAPWNIGRALKQADGNRTPIDSNWLLNTLLNELQTFGIRFDWLSDTH LRLWLNNRLLGELAIATGKDPDFQLTRPGIFTRQFNQGLLIRPDVLKGRSAAADFIHAFARALANMTQVERHYLLARQSE YDDSRALAANWLALILENKLSSRLPAATPREAIVDAHRLAQNYYRSALALDFYRYQPAGIDRFAEHFEGQWPSVDAQYQS TIALVQQGPLLYRELWQQRLSRFITDHQQMTDEHAFELLLVNPNRQSLMQQLTSLLGRSYTADELIRSIADDLR >Mature_553_residues PKCISALTLTASLWCSTAIANPVMLLAEQCQQLTLASDFDAAFNPESLDLIQDPLSAAVQATQFERLSLGFNNISSRVSL YLSEPLSKDGRDILVNCQIRLADEIDQITQKVAFKQLSLRLQTHGEGDTAALGQAMYRLASMRLSATDKARLHTAEASFM TGHKRGEFSLQPTDECQIVSENKSSKNQISNAVAVYLSEQINEECRESAWKSYQIRARELSLSALNVIHDIRQSQAIQQG FADYVSLALNNTFFATPDTALAFLQATRPDKTLAPWNIGRALKQADGNRTPIDSNWLLNTLLNELQTFGIRFDWLSDTHL RLWLNNRLLGELAIATGKDPDFQLTRPGIFTRQFNQGLLIRPDVLKGRSAAADFIHAFARALANMTQVERHYLLARQSEY DDSRALAANWLALILENKLSSRLPAATPREAIVDAHRLAQNYYRSALALDFYRYQPAGIDRFAEHFEGQWPSVDAQYQST IALVQQGPLLYRELWQQRLSRFITDHQQMTDEHAFELLLVNPNRQSLMQQLTSLLGRSYTADELIRSIADDLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 62453; Mature: 62322
Theoretical pI: Translated: 6.30; Mature: 6.30
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPKCISALTLTASLWCSTAIANPVMLLAEQCQQLTLASDFDAAFNPESLDLIQDPLSAAV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH QATQFERLSLGFNNISSRVSLYLSEPLSKDGRDILVNCQIRLADEIDQITQKVAFKQLSL HHHHHHHHHCCHHHHHHHHEEEECCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHH RLQTHGEGDTAALGQAMYRLASMRLSATDKARLHTAEASFMTGHKRGEFSLQPTDECQIV HEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHEEHHHHHHCCCCCCCCCCCCCCCCEEE SENKSSKNQISNAVAVYLSEQINEECRESAWKSYQIRARELSLSALNVIHDIRQSQAIQQ ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFADYVSLALNNTFFATPDTALAFLQATRPDKTLAPWNIGRALKQADGNRTPIDSNWLLN HHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHH TLLNELQTFGIRFDWLSDTHLRLWLNNRLLGELAIATGKDPDFQLTRPGIFTRQFNQGLL HHHHHHHHHCEEEEECCCCEEEEEECCCHHHHHHEECCCCCCCEEECCCCCHHHCCCCCE IRPDVLKGRSAAADFIHAFARALANMTQVERHYLLARQSEYDDSRALAANWLALILENKL ECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH SSRLPAATPREAIVDAHRLAQNYYRSALALDFYRYQPAGIDRFAEHFEGQWPSVDAQYQS HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHH TIALVQQGPLLYRELWQQRLSRFITDHQQMTDEHAFELLLVNPNRQSLMQQLTSLLGRSY HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHCCEEEEEECCCHHHHHHHHHHHHCCCC TADELIRSIADDLR CHHHHHHHHHHHCC >Mature Secondary Structure PKCISALTLTASLWCSTAIANPVMLLAEQCQQLTLASDFDAAFNPESLDLIQDPLSAAV CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH QATQFERLSLGFNNISSRVSLYLSEPLSKDGRDILVNCQIRLADEIDQITQKVAFKQLSL HHHHHHHHHCCHHHHHHHHEEEECCCCCCCCCEEEEEEEEEEHHHHHHHHHHHHHHHHHH RLQTHGEGDTAALGQAMYRLASMRLSATDKARLHTAEASFMTGHKRGEFSLQPTDECQIV HEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHEEHHHHHHCCCCCCCCCCCCCCCCEEE SENKSSKNQISNAVAVYLSEQINEECRESAWKSYQIRARELSLSALNVIHDIRQSQAIQQ ECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GFADYVSLALNNTFFATPDTALAFLQATRPDKTLAPWNIGRALKQADGNRTPIDSNWLLN HHHHHHHHHHCCCEEECCHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCCCCCCHHHHH TLLNELQTFGIRFDWLSDTHLRLWLNNRLLGELAIATGKDPDFQLTRPGIFTRQFNQGLL HHHHHHHHHCEEEEECCCCEEEEEECCCHHHHHHEECCCCCCCEEECCCCCHHHCCCCCE IRPDVLKGRSAAADFIHAFARALANMTQVERHYLLARQSEYDDSRALAANWLALILENKL ECCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH SSRLPAATPREAIVDAHRLAQNYYRSALALDFYRYQPAGIDRFAEHFEGQWPSVDAQYQS HHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCCCCHHHHH TIALVQQGPLLYRELWQQRLSRFITDHQQMTDEHAFELLLVNPNRQSLMQQLTSLLGRSY HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCHHCCEEEEEECCCHHHHHHHHHHHHCCCC TADELIRSIADDLR CHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA