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The map label for this gene is yciR [C]

Identifier: 119774956

GI number: 119774956

Start: 2217047

End: 2219224

Strand: Reverse

Name: yciR [C]

Synonym: Sama_1821

Alternate gene names: 119774956

Gene position: 2219224-2217047 (Counterclockwise)

Preceding gene: 119774957

Following gene: 119774953

Centisome position: 51.54

GC content: 51.33

Gene sequence:

>2178_bases
GTGAAAAGGCGTAAATATCAATTTCTGGTCGATCAAATAGTTCACTCTGCTGCCAAGCAGCAAGGTGACTTCGAAAAAAC
CGCCGAACTGGCTACCGAGCTCCTGTGTCAAACACTGGGGCTTTGTGACGCCAGCGTGTGGGCGTTTGATGCACTGCTCT
CCAGCCAATATCAGGTTGCACACTTCGGCAAACACCGACTGGAACCCAGTGCCAGGCGCCCTGCTCAAATCAGCGATTGT
CCACGTTATTTGAAAGAACTTGAAAGCAGACGCCATATCGATGCTTTTGATGTGGCCAATGACCCAAGACTCGTTGAGTT
GGCGTCCTGCTACTTTACTCCCAATGGCGTCCATTCTGCCCTCGAAGTGGCTATCCGGATAAACGGTCACATTGAAGGTG
TACTGAGCCTTGAGCGCAGCATAGGTGCGCGCTGGAGCGACAGCGAGCTTCATATCGCAAGCCAGGTGGCAGATCAGCTG
GCATTGGCGCTGGCGACCCGTCATACCTACGACAAAGAAGAAAAGCTCTCACTGTTTAAGAGTGCAGTGGAACAGTCTGA
GCAGGTGTTCATGCTGATTAACCTGCACACCGAAACCGTCGAATACGTCAATAAGGCACACGGTGACATTACCGGTGTAC
CAAGAGAAAAGGTTATTGGCCGCTCTCTAAGGCAACTGGACTTTTTCACTCAGCACCCACGGCTGGCAGAAGAAGTACTC
GGACGGGTGTTTCGTGGTCTCAGCGCCAAGGGAGAGGTTAAGCTCAAGCGCTATGATGGTCGCGACTACTGGCTGAATTA
TCAGGCAAGTCAGTTTGTTACCGAGCGTGGTAATTATTATGTGCTGGTCACTTGTGAAGATAATTCCGAGCAGCACAACT
ACCAACAGGAGCTAGAGCGCCTTGCCTGGCGGTGTTCGTTAACCGGGCTCTACAACCGCCTCCATTTCAATCGGGTACTC
GACCGCACTCAGCAGGGGCAATTGCTACTGGTAGATTTGGTCGGTTTTAAACGCTTCAACGATACCTATGGTCATGAGCA
GGGCGATGCGCTGCTGATGGAGATTGCGCGGCGTTTGAGGCATTTCTCTGACATCAATAAGGCGACAGAAATTGCCCGGG
TCGGCAGCGATGAATTTGCTATTTTGCTGCTTGGCGAAAAACTCAGTGCCGAAGTCGAATTTATCAGCAATCGCCTTTAT
CAACATCTTTCAGCACCGGTGCAGATAGGCAGGGAACAGGTTGATCCCAAACCGGCGCTGGCCATTGTCGATATCGCCTC
GGTCAGCAATCTGATTGCGCCGCTCACCTGTGCCGACATTGCCGTGCAATATGCCAAGAAGAAGCAGGGTGCTGCGATTC
AAATATTCAATAACACGCTGCTCAGCGCCTTTAAAGACGATGCGCAGATTGAGCGTGACTTACACTCGGCCATTCGAGGA
CGGCAATTTGAGCTTTATTATCAGCCGCTGCGCGATCTGCAAAACGATCGCTACACAGGTGCAGAGGCTCTTATCCGCTG
GCACCACCCTAAAAAAGGTGTGCTTTATCCCGGGGCGTTTATTGATATCGCCGAGCAATCGGGACTGATTACTGCCATCG
GCAGTTGGGTGCTGGAAGCGGCTTGTCGGCAGCTCAACTTATGGCAGCATCACAATCTGGACATCTCCATGCACGTGAAC
GTGTCCGCGAGGCAGTTTTTCAGCGGTAATCTCTATGAGCAGGTATGGCAGTTGCTTACCCGTTATCGCCTCAAGCCCAA
GACGCTGATTTTGGAAATTACTGAAACCGAGTTGATGGAAGATATCCGTTATGCCACCAACCTGTGTCAGGAACTCGCTG
AACTCGGGGTGGGGCTTGCCATTGATGACTTTGGTACCGGTTACAGCTCAATGCGGTATTTAAAACAGTTTCCCATCAGT
AAGATTAAAATTGACCGCTCGTTTATCTCCGATCTCACTATCAGCCGGGAAAGTCAGGAAATTGTAAGCGCCATTATCGC
CATGGCGAAGGCCTTGAATCTGTCACTGACCGCAGAAGGGGTCGAAACCCCGGAACAAGAGGCGTTTTTAGCGGCCAACC
TTTGCCATCAGGCACAGGGCTTCCTCTATAGCCCGGCATTGCGTGAAGCAGAGTTCTCAAAATTTATCGGTCAGGACCGG
CTCATTACCGTGCATTAA

Upstream 100 bases:

>100_bases
CAGCTGATGTACAGTCGAAAACCAATAAAAAATAACAATAATTTAGAATAGGGCGCACAGACGTCCGTCATTTCCCGCAC
CCTGGGATTTAGGGAACTGA

Downstream 100 bases:

>100_bases
AAAAGCGCCCATGGGCGCTTTTGTCATTTTTAAAGCTACTGACTTCTCAAACAACAGTGTTTGAGCTTTTTACCGCTGCC
ACATACACAGGTGTCATTCC

Product: putative diguanylate phosphodiesterase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 725; Mature: 725

Protein sequence:

>725_residues
MKRRKYQFLVDQIVHSAAKQQGDFEKTAELATELLCQTLGLCDASVWAFDALLSSQYQVAHFGKHRLEPSARRPAQISDC
PRYLKELESRRHIDAFDVANDPRLVELASCYFTPNGVHSALEVAIRINGHIEGVLSLERSIGARWSDSELHIASQVADQL
ALALATRHTYDKEEKLSLFKSAVEQSEQVFMLINLHTETVEYVNKAHGDITGVPREKVIGRSLRQLDFFTQHPRLAEEVL
GRVFRGLSAKGEVKLKRYDGRDYWLNYQASQFVTERGNYYVLVTCEDNSEQHNYQQELERLAWRCSLTGLYNRLHFNRVL
DRTQQGQLLLVDLVGFKRFNDTYGHEQGDALLMEIARRLRHFSDINKATEIARVGSDEFAILLLGEKLSAEVEFISNRLY
QHLSAPVQIGREQVDPKPALAIVDIASVSNLIAPLTCADIAVQYAKKKQGAAIQIFNNTLLSAFKDDAQIERDLHSAIRG
RQFELYYQPLRDLQNDRYTGAEALIRWHHPKKGVLYPGAFIDIAEQSGLITAIGSWVLEAACRQLNLWQHHNLDISMHVN
VSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELMEDIRYATNLCQELAELGVGLAIDDFGTGYSSMRYLKQFPIS
KIKIDRSFISDLTISRESQEIVSAIIAMAKALNLSLTAEGVETPEQEAFLAANLCHQAQGFLYSPALREAEFSKFIGQDR
LITVH

Sequences:

>Translated_725_residues
MKRRKYQFLVDQIVHSAAKQQGDFEKTAELATELLCQTLGLCDASVWAFDALLSSQYQVAHFGKHRLEPSARRPAQISDC
PRYLKELESRRHIDAFDVANDPRLVELASCYFTPNGVHSALEVAIRINGHIEGVLSLERSIGARWSDSELHIASQVADQL
ALALATRHTYDKEEKLSLFKSAVEQSEQVFMLINLHTETVEYVNKAHGDITGVPREKVIGRSLRQLDFFTQHPRLAEEVL
GRVFRGLSAKGEVKLKRYDGRDYWLNYQASQFVTERGNYYVLVTCEDNSEQHNYQQELERLAWRCSLTGLYNRLHFNRVL
DRTQQGQLLLVDLVGFKRFNDTYGHEQGDALLMEIARRLRHFSDINKATEIARVGSDEFAILLLGEKLSAEVEFISNRLY
QHLSAPVQIGREQVDPKPALAIVDIASVSNLIAPLTCADIAVQYAKKKQGAAIQIFNNTLLSAFKDDAQIERDLHSAIRG
RQFELYYQPLRDLQNDRYTGAEALIRWHHPKKGVLYPGAFIDIAEQSGLITAIGSWVLEAACRQLNLWQHHNLDISMHVN
VSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELMEDIRYATNLCQELAELGVGLAIDDFGTGYSSMRYLKQFPIS
KIKIDRSFISDLTISRESQEIVSAIIAMAKALNLSLTAEGVETPEQEAFLAANLCHQAQGFLYSPALREAEFSKFIGQDR
LITVH
>Mature_725_residues
MKRRKYQFLVDQIVHSAAKQQGDFEKTAELATELLCQTLGLCDASVWAFDALLSSQYQVAHFGKHRLEPSARRPAQISDC
PRYLKELESRRHIDAFDVANDPRLVELASCYFTPNGVHSALEVAIRINGHIEGVLSLERSIGARWSDSELHIASQVADQL
ALALATRHTYDKEEKLSLFKSAVEQSEQVFMLINLHTETVEYVNKAHGDITGVPREKVIGRSLRQLDFFTQHPRLAEEVL
GRVFRGLSAKGEVKLKRYDGRDYWLNYQASQFVTERGNYYVLVTCEDNSEQHNYQQELERLAWRCSLTGLYNRLHFNRVL
DRTQQGQLLLVDLVGFKRFNDTYGHEQGDALLMEIARRLRHFSDINKATEIARVGSDEFAILLLGEKLSAEVEFISNRLY
QHLSAPVQIGREQVDPKPALAIVDIASVSNLIAPLTCADIAVQYAKKKQGAAIQIFNNTLLSAFKDDAQIERDLHSAIRG
RQFELYYQPLRDLQNDRYTGAEALIRWHHPKKGVLYPGAFIDIAEQSGLITAIGSWVLEAACRQLNLWQHHNLDISMHVN
VSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELMEDIRYATNLCQELAELGVGLAIDDFGTGYSSMRYLKQFPIS
KIKIDRSFISDLTISRESQEIVSAIIAMAKALNLSLTAEGVETPEQEAFLAANLCHQAQGFLYSPALREAEFSKFIGQDR
LITVH

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=555, Percent_Identity=29.7297297297297, Blast_Score=234, Evalue=2e-62,
Organism=Escherichia coli, GI87081921, Length=436, Percent_Identity=31.4220183486239, Blast_Score=198, Evalue=1e-51,
Organism=Escherichia coli, GI226510982, Length=424, Percent_Identity=29.0094339622642, Blast_Score=182, Evalue=5e-47,
Organism=Escherichia coli, GI1790496, Length=248, Percent_Identity=33.0645161290323, Blast_Score=146, Evalue=5e-36,
Organism=Escherichia coli, GI1786507, Length=237, Percent_Identity=34.1772151898734, Blast_Score=146, Evalue=5e-36,
Organism=Escherichia coli, GI1788502, Length=248, Percent_Identity=33.8709677419355, Blast_Score=145, Evalue=9e-36,
Organism=Escherichia coli, GI87081743, Length=245, Percent_Identity=32.6530612244898, Blast_Score=142, Evalue=8e-35,
Organism=Escherichia coli, GI87081980, Length=250, Percent_Identity=33.6, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI87081845, Length=255, Percent_Identity=32.156862745098, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1787055, Length=252, Percent_Identity=32.1428571428571, Blast_Score=119, Evalue=6e-28,
Organism=Escherichia coli, GI1788849, Length=427, Percent_Identity=24.824355971897, Blast_Score=105, Evalue=1e-23,
Organism=Escherichia coli, GI87082096, Length=218, Percent_Identity=30.7339449541284, Blast_Score=97, Evalue=3e-21,
Organism=Escherichia coli, GI1787410, Length=123, Percent_Identity=31.7073170731707, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1788956, Length=120, Percent_Identity=36.6666666666667, Blast_Score=64, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 82420; Mature: 82420

Theoretical pI: Translated: 6.58; Mature: 6.58

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRRKYQFLVDQIVHSAAKQQGDFEKTAELATELLCQTLGLCDASVWAFDALLSSQYQVA
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
HFGKHRLEPSARRPAQISDCPRYLKELESRRHIDAFDVANDPRLVELASCYFTPNGVHSA
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHCCCCCCHHHH
LEVAIRINGHIEGVLSLERSIGARWSDSELHIASQVADQLALALATRHTYDKEEKLSLFK
EEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
SAVEQSEQVFMLINLHTETVEYVNKAHGDITGVPREKVIGRSLRQLDFFTQHPRLAEEVL
HHHHCCCCEEEEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
GRVFRGLSAKGEVKLKRYDGRDYWLNYQASQFVTERGNYYVLVTCEDNSEQHNYQQELER
HHHHHCCCCCCCEEEEEECCCEEEEECCHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHH
LAWRCSLTGLYNRLHFNRVLDRTQQGQLLLVDLVGFKRFNDTYGHEQGDALLMEIARRLR
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHH
HFSDINKATEIARVGSDEFAILLLGEKLSAEVEFISNRLYQHLSAPVQIGREQVDPKPAL
HHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHCHHHCCCCCCE
AIVDIASVSNLIAPLTCADIAVQYAKKKQGAAIQIFNNTLLSAFKDDAQIERDLHSAIRG
EEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCC
RQFELYYQPLRDLQNDRYTGAEALIRWHHPKKGVLYPGAFIDIAEQSGLITAIGSWVLEA
CEEEHHHHHHHHHCCCCCCCHHHHHEECCCCCCEECCCHHEEHHCCCCHHHHHHHHHHHH
ACRQLNLWQHHNLDISMHVNVSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELME
HHHHCCCHHCCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHH
DIRYATNLCQELAELGVGLAIDDFGTGYSSMRYLKQFPISKIKIDRSFISDLTISRESQE
HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCHHEEECHHHHHHHHCCCHHHH
IVSAIIAMAKALNLSLTAEGVETPEQEAFLAANLCHQAQGFLYSPALREAEFSKFIGQDR
HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHCCCCC
LITVH
EEEEC
>Mature Secondary Structure
MKRRKYQFLVDQIVHSAAKQQGDFEKTAELATELLCQTLGLCDASVWAFDALLSSQYQVA
CCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCHHHH
HFGKHRLEPSARRPAQISDCPRYLKELESRRHIDAFDVANDPRLVELASCYFTPNGVHSA
HHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEHHHCCCCCCHHHH
LEVAIRINGHIEGVLSLERSIGARWSDSELHIASQVADQLALALATRHTYDKEEKLSLFK
EEEEEEECCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
SAVEQSEQVFMLINLHTETVEYVNKAHGDITGVPREKVIGRSLRQLDFFTQHPRLAEEVL
HHHHCCCCEEEEEEECHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
GRVFRGLSAKGEVKLKRYDGRDYWLNYQASQFVTERGNYYVLVTCEDNSEQHNYQQELER
HHHHHCCCCCCCEEEEEECCCEEEEECCHHHHHHCCCCEEEEEEECCCCCCCHHHHHHHH
LAWRCSLTGLYNRLHFNRVLDRTQQGQLLLVDLVGFKRFNDTYGHEQGDALLMEIARRLR
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEHHHHHHCCCCCCCCCCHHHHHHHHHHH
HFSDINKATEIARVGSDEFAILLLGEKLSAEVEFISNRLYQHLSAPVQIGREQVDPKPAL
HHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHCCHHHHCHHHCCCCCCE
AIVDIASVSNLIAPLTCADIAVQYAKKKQGAAIQIFNNTLLSAFKDDAQIERDLHSAIRG
EEEEHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCC
RQFELYYQPLRDLQNDRYTGAEALIRWHHPKKGVLYPGAFIDIAEQSGLITAIGSWVLEA
CEEEHHHHHHHHHCCCCCCCHHHHHEECCCCCCEECCCHHEEHHCCCCHHHHHHHHHHHH
ACRQLNLWQHHNLDISMHVNVSARQFFSGNLYEQVWQLLTRYRLKPKTLILEITETELME
HHHHCCCHHCCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHCCCCCEEEEEEHHHHHHH
DIRYATNLCQELAELGVGLAIDDFGTGYSSMRYLKQFPISKIKIDRSFISDLTISRESQE
HHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCHHEEECHHHHHHHHCCCHHHH
IVSAIIAMAKALNLSLTAEGVETPEQEAFLAANLCHQAQGFLYSPALREAEFSKFIGQDR
HHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHCCCCC
LITVH
EEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]