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The map label for this gene is ydaL [H]

Identifier: 119774953

GI number: 119774953

Start: 2215257

End: 2215913

Strand: Reverse

Name: ydaL [H]

Synonym: Sama_1818

Alternate gene names: 119774953

Gene position: 2215913-2215257 (Counterclockwise)

Preceding gene: 119774956

Following gene: 119774951

Centisome position: 51.46

GC content: 52.05

Gene sequence:

>657_bases
ATGAGAGGCCGCAACCCAAGCGGCATATCTTTACAAAGTGTGTTACTTCCAGCGTTAGAGGATAGCAGCGTGCAGCGTGA
AGAACTGGATTTATTCATGGCGGAAATGGCCGATGTGATCCCACTTAAAGAGGCTGACAGACACCATTTTCTGCAGAGTA
CCTGTGACGATGAGGCGGCGAAAATACGTCGAGAAGCCGCCGACAGCGACGAGCGACTTGAACTCTTGCCCATCCATCCC
GCTGAGCTGACTCGGGTAAAAGGGGCTGAGGTCGTGAGTTTCAGCCGTGAAGGGGTGCAGGAGGCGGTATTAAAACAACT
TCGACTGGGTCGCTATGAAGCAAAAGTCCGGCATGACTTCCGCGGTTTAAAGCTGAAAGAGGCGCGTGAGGTGCTGCTTG
GCCTGATAGATTCTGCCCTTTTTAGAGGTGATCGGAACCTTTTGCTTATACCTGGAAAAGGTTCAGGTAATCAGCCGTTT
GAAGCATTGATGAAATCAGCCCTTTGCACCTGGCTTAGCCGTCTTGAAGATGTCAGTGCCTATCACTCAGCAATAAAAGA
AGAAGGGGGCGCAGGAGCCCTGTATGTGATGCTGCGTAAATCAGATGCCGCAAAGGTGCACAGTCGGGAGACCAATCGTA
AAGGGGCCCGCCGCTGA

Upstream 100 bases:

>100_bases
TGTTTGCCAAAACAGCAAACGAGAGCATCAGGCTCAACAATATCGGAAAAATTCTCATCTGTTTTACTTAAATAACGCTA
TTATGGGCCAAATATAATGT

Downstream 100 bases:

>100_bases
GTTACCACTCCCGCAACAAGGCACCCATGCCGTAAGAAAATCAGGTCCCCAACGAACAGAAAGAATAGAAAGAATAGAAA
TAATAAAAAGCCCGGTTGTT

Product: Smr domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 218; Mature: 218

Protein sequence:

>218_residues
MRGRNPSGISLQSVLLPALEDSSVQREELDLFMAEMADVIPLKEADRHHFLQSTCDDEAAKIRREAADSDERLELLPIHP
AELTRVKGAEVVSFSREGVQEAVLKQLRLGRYEAKVRHDFRGLKLKEAREVLLGLIDSALFRGDRNLLLIPGKGSGNQPF
EALMKSALCTWLSRLEDVSAYHSAIKEEGGAGALYVMLRKSDAAKVHSRETNRKGARR

Sequences:

>Translated_218_residues
MRGRNPSGISLQSVLLPALEDSSVQREELDLFMAEMADVIPLKEADRHHFLQSTCDDEAAKIRREAADSDERLELLPIHP
AELTRVKGAEVVSFSREGVQEAVLKQLRLGRYEAKVRHDFRGLKLKEAREVLLGLIDSALFRGDRNLLLIPGKGSGNQPF
EALMKSALCTWLSRLEDVSAYHSAIKEEGGAGALYVMLRKSDAAKVHSRETNRKGARR
>Mature_218_residues
MRGRNPSGISLQSVLLPALEDSSVQREELDLFMAEMADVIPLKEADRHHFLQSTCDDEAAKIRREAADSDERLELLPIHP
AELTRVKGAEVVSFSREGVQEAVLKQLRLGRYEAKVRHDFRGLKLKEAREVLLGLIDSALFRGDRNLLLIPGKGSGNQPF
EALMKSALCTWLSRLEDVSAYHSAIKEEGGAGALYVMLRKSDAAKVHSRETNRKGARR

Specific function: Unknown

COG id: COG2840

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Smr domain [H]

Homologues:

Organism=Escherichia coli, GI1787602, Length=187, Percent_Identity=32.620320855615, Blast_Score=97, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002625 [H]

Pfam domain/function: PF01713 Smr [H]

EC number: NA

Molecular weight: Translated: 24328; Mature: 24328

Theoretical pI: Translated: 8.25; Mature: 8.25

Prosite motif: PS50828 SMR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRGRNPSGISLQSVLLPALEDSSVQREELDLFMAEMADVIPLKEADRHHFLQSTCDDEAA
CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHH
KIRREAADSDERLELLPIHPAELTRVKGAEVVSFSREGVQEAVLKQLRLGRYEAKVRHDF
HHHHHHCCCCCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
RGLKLKEAREVLLGLIDSALFRGDRNLLLIPGKGSGNQPFEALMKSALCTWLSRLEDVSA
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YHSAIKEEGGAGALYVMLRKSDAAKVHSRETNRKGARR
HHHHHHHCCCCCEEEEEEECCCHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MRGRNPSGISLQSVLLPALEDSSVQREELDLFMAEMADVIPLKEADRHHFLQSTCDDEAA
CCCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHH
KIRREAADSDERLELLPIHPAELTRVKGAEVVSFSREGVQEAVLKQLRLGRYEAKVRHDF
HHHHHHCCCCCCEEEEECCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
RGLKLKEAREVLLGLIDSALFRGDRNLLLIPGKGSGNQPFEALMKSALCTWLSRLEDVSA
CCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHH
YHSAIKEEGGAGALYVMLRKSDAAKVHSRETNRKGARR
HHHHHHHCCCCCEEEEEEECCCHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]