| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774952
Identifier: 119774952
GI number: 119774952
Start: 2213192
End: 2215048
Strand: Direct
Name: 119774952
Synonym: Sama_1817
Alternate gene names: NA
Gene position: 2213192-2215048 (Clockwise)
Preceding gene: 119774949
Following gene: 119774954
Centisome position: 51.4
GC content: 54.33
Gene sequence:
>1857_bases TTGTTACGCCCCGCCAAATTGGCCTTGGGTGTAGCCCTTGCACTCGGCCTCAGCGCCTGTCAGGACGAGCAGCACTCAGT TGCTGTTAATAAAGACGTTGCTGCAGTTACTGCGGTGTCCTCTAACGTATCCACCCAGGATGCGATTGATTTTATCAATC AGGCGGAAGCCGAGCTTGCCGCGCTGTCTCTAGAGGCTAACCGTGCAGAGTGGATATACAGTAACTTTATCACCGAAGAC ACAGCATCCTTATCGGCCGCAGTTAACGAAAAGGTGACCGCCACGTCGGTACGTTTAGCCACTGAAGCTGCCAAATTTGC GGAAGTTGAGCTTGATGCCGTGAACGCCCGTAAGCTCAATATGCTCAGAAGCGCACTGGTTCTGCCCTCGCCACTCGATC CTGCAAAAAATGCCGAGCTGGCCGGTATCGTTGCCCAGCTCAACGGCCTCTATGGCAAAGGCAAATACTGCTTTGCCGAT GGTCGCTGCCTGACCCAGCCAGAGCTCTCTGCCCTGATGGCCGAATCCCGTGACCCTGAACTCTTAAAAGAAATCTGGGC TGGCTGGCGTGACATTGCCAAACCCATGCGTCCGCTGTTCGAACGCGAAGTGGTACTTGCCAATGAAGGAGCCAAAGACC TGGGCTTTGCCAATTTGTCTGAGCTGTGGCGCAGTCAATACGATATGGCGCCTGATGCATTTTCCACCGAACTTGACCGC CTCTGGGGTCAGGTAAAACCGCTTTATGATTCGCTGCATTGTTATGTGCGTGGTGAGCTCAACGCGCAATACGGCGACGA TGTGGTGCCAAGAACCGGTCCAATCCCGGCACATCTCCTGGGTAACATGTGGGCCCAGCAGTGGGGCACCATTTACCCTC TCGTTGCACCAAAGGATGCTGACCCAGGCTATGACGTGACAGCCCTGCTTGCCAAACAGGGTTACGATGAGCACAAAATG GTGCAGCAGGCCGAGAGCTTCTTTACTTCACTGGGTTTTGACAAGCTCCCCGATACCTTCTGGAGCCGTTCATTATTCGT GCAGCCCAAAGACCGTGATGTCGTCTGTCACGCCTCTGCCTGGGATTTGGATAACGCGGATGATATCCGTATCAAGATGT GTATCCAGAAAACCGCAGAAGACTTTACCGTGATCCACCACGAGCTGGGCCACAACTTCTACCAGCGTGCTTATAAGAAT CAGCCTTTTATCTTTAAAAACAGCGCCAACGATGGCTTCCATGAAGCCATTGGCGATACGGTCGCCCTGTCCATCACACC CAAGTACCTGCAGCAGATTGGTCTGCTGGATACGGTTCCCGATGCGTCAAAAGACATTGGTCTGCTATTAAAACAAGCCC TGGACAAGGTCGCTTTCCTGCCCTTTGGTCTGATGATTGACCAGTGGCGCTGGAAGGTATTCAGCGGTGAAATCACGCCT GCGAACTACAACCAGGCATGGTGGGATCTGCGCTTGAAGTATCAGGGTGTGATGGCGCCTGTTGCGCGATCAGAAGCCGA TTTTGACCCGGGTGCAAAATACCACGTGCCGGGCAATGTCCCTTACACCCGTTACTTCCTGGCTCACATTCTCCAATTCC AGTTCCACCGTTCCCTGTGCGACGTGGCCGGTGACCAGGGCCCGGTGCATCGCTGCTCGATATACGGCAACCAGGAAGCC GGCGCCAAGCTCAATCAAATGCTGGAAATGGGTTCGAGCAAGCCCTGGCCCGAAGCGTTGGCCGTGGTGACTGGAAAACA GGAAATGGACGCCAGCGCCGTACTCGACTATTTTGCGCCGCTGAAAACCTGGCTCGACGAGCAAAACACCCACGCCAATC GCCAGTGTGGTTGGTAA
Upstream 100 bases:
>100_bases CATAGTAATTTTTGTGTGTGCTCGTTAGACTTTCGCCGTTCAATAATAACAAGGATGCAACCTGATGACCCAAGCCAAGA CCCAAACGAAGGTTCACACA
Downstream 100 bases:
>100_bases GACATTAAGTGAGCCGATGCTGACCTAGACTTCTCTGCTGCCTTTCGGTGGTTAAGCACAGGAATGACAGTCAGCCGCAC CATCATTGGTCAACATAAAA
Product: peptidyl-dipeptidase A
Products: NA
Alternate protein names: Zinc-Dependent Metallopeptidase; Angiotensin-Converting; Dipeptidyl Carboxypeptidase; Angiotensin-Converting Family Protein; Dipeptidyl Carboxydipeptidase Family; Zinc Metallopeptidase Family Protein; Angiotensin-Converting Peptidyl Dipeptidase Protein; Peptidyl-Dipeptidase Dcp; Dipeptidyl Carboxydipeptidase Family Protein
Number of amino acids: Translated: 618; Mature: 618
Protein sequence:
>618_residues MLRPAKLALGVALALGLSACQDEQHSVAVNKDVAAVTAVSSNVSTQDAIDFINQAEAELAALSLEANRAEWIYSNFITED TASLSAAVNEKVTATSVRLATEAAKFAEVELDAVNARKLNMLRSALVLPSPLDPAKNAELAGIVAQLNGLYGKGKYCFAD GRCLTQPELSALMAESRDPELLKEIWAGWRDIAKPMRPLFEREVVLANEGAKDLGFANLSELWRSQYDMAPDAFSTELDR LWGQVKPLYDSLHCYVRGELNAQYGDDVVPRTGPIPAHLLGNMWAQQWGTIYPLVAPKDADPGYDVTALLAKQGYDEHKM VQQAESFFTSLGFDKLPDTFWSRSLFVQPKDRDVVCHASAWDLDNADDIRIKMCIQKTAEDFTVIHHELGHNFYQRAYKN QPFIFKNSANDGFHEAIGDTVALSITPKYLQQIGLLDTVPDASKDIGLLLKQALDKVAFLPFGLMIDQWRWKVFSGEITP ANYNQAWWDLRLKYQGVMAPVARSEADFDPGAKYHVPGNVPYTRYFLAHILQFQFHRSLCDVAGDQGPVHRCSIYGNQEA GAKLNQMLEMGSSKPWPEALAVVTGKQEMDASAVLDYFAPLKTWLDEQNTHANRQCGW
Sequences:
>Translated_618_residues MLRPAKLALGVALALGLSACQDEQHSVAVNKDVAAVTAVSSNVSTQDAIDFINQAEAELAALSLEANRAEWIYSNFITED TASLSAAVNEKVTATSVRLATEAAKFAEVELDAVNARKLNMLRSALVLPSPLDPAKNAELAGIVAQLNGLYGKGKYCFAD GRCLTQPELSALMAESRDPELLKEIWAGWRDIAKPMRPLFEREVVLANEGAKDLGFANLSELWRSQYDMAPDAFSTELDR LWGQVKPLYDSLHCYVRGELNAQYGDDVVPRTGPIPAHLLGNMWAQQWGTIYPLVAPKDADPGYDVTALLAKQGYDEHKM VQQAESFFTSLGFDKLPDTFWSRSLFVQPKDRDVVCHASAWDLDNADDIRIKMCIQKTAEDFTVIHHELGHNFYQRAYKN QPFIFKNSANDGFHEAIGDTVALSITPKYLQQIGLLDTVPDASKDIGLLLKQALDKVAFLPFGLMIDQWRWKVFSGEITP ANYNQAWWDLRLKYQGVMAPVARSEADFDPGAKYHVPGNVPYTRYFLAHILQFQFHRSLCDVAGDQGPVHRCSIYGNQEA GAKLNQMLEMGSSKPWPEALAVVTGKQEMDASAVLDYFAPLKTWLDEQNTHANRQCGW >Mature_618_residues MLRPAKLALGVALALGLSACQDEQHSVAVNKDVAAVTAVSSNVSTQDAIDFINQAEAELAALSLEANRAEWIYSNFITED TASLSAAVNEKVTATSVRLATEAAKFAEVELDAVNARKLNMLRSALVLPSPLDPAKNAELAGIVAQLNGLYGKGKYCFAD GRCLTQPELSALMAESRDPELLKEIWAGWRDIAKPMRPLFEREVVLANEGAKDLGFANLSELWRSQYDMAPDAFSTELDR LWGQVKPLYDSLHCYVRGELNAQYGDDVVPRTGPIPAHLLGNMWAQQWGTIYPLVAPKDADPGYDVTALLAKQGYDEHKM VQQAESFFTSLGFDKLPDTFWSRSLFVQPKDRDVVCHASAWDLDNADDIRIKMCIQKTAEDFTVIHHELGHNFYQRAYKN QPFIFKNSANDGFHEAIGDTVALSITPKYLQQIGLLDTVPDASKDIGLLLKQALDKVAFLPFGLMIDQWRWKVFSGEITP ANYNQAWWDLRLKYQGVMAPVARSEADFDPGAKYHVPGNVPYTRYFLAHILQFQFHRSLCDVAGDQGPVHRCSIYGNQEA GAKLNQMLEMGSSKPWPEALAVVTGKQEMDASAVLDYFAPLKTWLDEQNTHANRQCGW
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Homo sapiens, GI23238214, Length=596, Percent_Identity=42.1140939597315, Blast_Score=494, Evalue=1e-139, Organism=Homo sapiens, GI4503273, Length=583, Percent_Identity=42.3670668953688, Blast_Score=491, Evalue=1e-139, Organism=Homo sapiens, GI295844837, Length=596, Percent_Identity=38.4228187919463, Blast_Score=420, Evalue=1e-117, Organism=Homo sapiens, GI11225609, Length=601, Percent_Identity=36.7720465890183, Blast_Score=393, Evalue=1e-109, Organism=Caenorhabditis elegans, GI71985287, Length=583, Percent_Identity=28.3018867924528, Blast_Score=256, Evalue=2e-68, Organism=Drosophila melanogaster, GI24584232, Length=586, Percent_Identity=40.2730375426621, Blast_Score=441, Evalue=1e-124, Organism=Drosophila melanogaster, GI17137008, Length=586, Percent_Identity=40.2730375426621, Blast_Score=441, Evalue=1e-124, Organism=Drosophila melanogaster, GI17137262, Length=592, Percent_Identity=37.1621621621622, Blast_Score=394, Evalue=1e-110, Organism=Drosophila melanogaster, GI85724942, Length=461, Percent_Identity=40.7809110629067, Blast_Score=385, Evalue=1e-107, Organism=Drosophila melanogaster, GI22026846, Length=460, Percent_Identity=26.9565217391304, Blast_Score=188, Evalue=8e-48, Organism=Drosophila melanogaster, GI28574153, Length=590, Percent_Identity=25.2542372881356, Blast_Score=181, Evalue=1e-45, Organism=Drosophila melanogaster, GI24762773, Length=484, Percent_Identity=27.8925619834711, Blast_Score=180, Evalue=2e-45,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 68697; Mature: 68697
Theoretical pI: Translated: 4.98; Mature: 4.98
Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS00142 ZINC_PROTEASE
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 3.6 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.1 %Met (Mature Protein) 3.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLRPAKLALGVALALGLSACQDEQHSVAVNKDVAAVTAVSSNVSTQDAIDFINQAEAELA CCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHEEEECCCCCCHHHHHHHHHHHHHHHH ALSLEANRAEWIYSNFITEDTASLSAAVNEKVTATSVRLATEAAKFAEVELDAVNARKLN HEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCHHHHH MLRSALVLPSPLDPAKNAELAGIVAQLNGLYGKGKYCFADGRCLTQPELSALMAESRDPE HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCHHHHHHHHCCCCHH LLKEIWAGWRDIAKPMRPLFEREVVLANEGAKDLGFANLSELWRSQYDMAPDAFSTELDR HHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH LWGQVKPLYDSLHCYVRGELNAQYGDDVVPRTGPIPAHLLGNMWAQQWGTIYPLVAPKDA HHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC DPGYDVTALLAKQGYDEHKMVQQAESFFTSLGFDKLPDTFWSRSLFVQPKDRDVVCHASA CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCCHHHHCCEEEECCCCCCEEEEECC WDLDNADDIRIKMCIQKTAEDFTVIHHELGHNFYQRAYKNQPFIFKNSANDGFHEAIGDT CCCCCCCCCEEEHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEECCCCCCHHHHCCCE VALSITPKYLQQIGLLDTVPDASKDIGLLLKQALDKVAFLPFGLMIDQWRWKVFSGEITP EEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC ANYNQAWWDLRLKYQGVMAPVARSEADFDPGAKYHVPGNVPYTRYFLAHILQFQFHRSLC CCCCCCEEEEEEEECCHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH DVAGDQGPVHRCSIYGNQEAGAKLNQMLEMGSSKPWPEALAVVTGKQEMDASAVLDYFAP HHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHEEEECCHHCCHHHHHHHHHH LKTWLDEQNTHANRQCGW HHHHHCCCCCCCCCCCCC >Mature Secondary Structure MLRPAKLALGVALALGLSACQDEQHSVAVNKDVAAVTAVSSNVSTQDAIDFINQAEAELA CCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCHHEEEECCCCCCHHHHHHHHHHHHHHHH ALSLEANRAEWIYSNFITEDTASLSAAVNEKVTATSVRLATEAAKFAEVELDAVNARKLN HEEECCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHEEEECCCHHHHH MLRSALVLPSPLDPAKNAELAGIVAQLNGLYGKGKYCFADGRCLTQPELSALMAESRDPE HHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCCCCCEEEECCEECCCHHHHHHHHCCCCHH LLKEIWAGWRDIAKPMRPLFEREVVLANEGAKDLGFANLSELWRSQYDMAPDAFSTELDR HHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHH LWGQVKPLYDSLHCYVRGELNAQYGDDVVPRTGPIPAHLLGNMWAQQWGTIYPLVAPKDA HHHHHHHHHHCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCC DPGYDVTALLAKQGYDEHKMVQQAESFFTSLGFDKLPDTFWSRSLFVQPKDRDVVCHASA CCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHCCHHHHCCEEEECCCCCCEEEEECC WDLDNADDIRIKMCIQKTAEDFTVIHHELGHNFYQRAYKNQPFIFKNSANDGFHEAIGDT CCCCCCCCCEEEHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEECCCCCCHHHHCCCE VALSITPKYLQQIGLLDTVPDASKDIGLLLKQALDKVAFLPFGLMIDQWRWKVFSGEITP EEEEECHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCC ANYNQAWWDLRLKYQGVMAPVARSEADFDPGAKYHVPGNVPYTRYFLAHILQFQFHRSLC CCCCCCEEEEEEEECCHHHHHHCCCCCCCCCCEEECCCCCCHHHHHHHHHHHHHHHHHHH DVAGDQGPVHRCSIYGNQEAGAKLNQMLEMGSSKPWPEALAVVTGKQEMDASAVLDYFAP HHCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCCCCHHHEEEECCHHCCHHHHHHHHHH LKTWLDEQNTHANRQCGW HHHHHCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA