Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774954

Identifier: 119774954

GI number: 119774954

Start: 2215956

End: 2216519

Strand: Direct

Name: 119774954

Synonym: Sama_1819

Alternate gene names: NA

Gene position: 2215956-2216519 (Clockwise)

Preceding gene: 119774952

Following gene: 119774955

Centisome position: 51.46

GC content: 48.4

Gene sequence:

>564_bases
ATGAGAATTTTTCCGATATTGTTGAGCCTGATGCTCTCGTTTGCTGTTTTGGCAAACAACGCCCCGCAAACGAAAGATGA
CATTGCCATCAATAAAACCTATGACCTCTTTTCTGAGGCCTTCGACAAGCTGAATGCTGCCCTGATAGGCGAGGCATACA
CCGAGAGTGCCTGCTATATACCCGAGCGTCACGATAAAGAAATTATTCGCGGACGCGATGCCATTGTGTCTGTTTATGAA
AAGTTTTTCGGCAAAATCCGCAGTAAAAATGCCCGTATCGAAGTGGATTTCCGGGTGATAGACCGCAGTCGCGCAGGCGA
TTCAGTGACGGATGTTGGTTATTACCTTATTCGATTCCATCCGGCCAGCGACACCGGTGAACCCGTCAGTGAATACGCAG
GCAAATTTGTCACTGTCTCCAGAAAGCAAGCCGATGGCAATTGGCTCCTGTCCATCGATTCCAGCAACCGCTCAGAGCCC
AGGTTTTATTACCAGACACAGCCTGTGGGTGAACTCTATTTCGGACAAAGGTTCATCTCACCCGATGTTGCCAAAAAACC
CTAA

Upstream 100 bases:

>100_bases
CTAACGCTGGAAGTAACACACTTTGTAAAGATATGCCGCTTGGGTTGCGGCCTCTCATACATTATATTTGGCCCATAATA
GCGTTATTTAAGTAAAACAG

Downstream 100 bases:

>100_bases
CCTCTGATCTGACAGCTGAGTAGTAAGATTATGTCCACTCCCTGCCCTTGCGGCCTCGCAAGCTATCACAGCTGCTGCGA
GCCCTTCCACTCTGGCAACA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 187; Mature: 187

Protein sequence:

>187_residues
MRIFPILLSLMLSFAVLANNAPQTKDDIAINKTYDLFSEAFDKLNAALIGEAYTESACYIPERHDKEIIRGRDAIVSVYE
KFFGKIRSKNARIEVDFRVIDRSRAGDSVTDVGYYLIRFHPASDTGEPVSEYAGKFVTVSRKQADGNWLLSIDSSNRSEP
RFYYQTQPVGELYFGQRFISPDVAKKP

Sequences:

>Translated_187_residues
MRIFPILLSLMLSFAVLANNAPQTKDDIAINKTYDLFSEAFDKLNAALIGEAYTESACYIPERHDKEIIRGRDAIVSVYE
KFFGKIRSKNARIEVDFRVIDRSRAGDSVTDVGYYLIRFHPASDTGEPVSEYAGKFVTVSRKQADGNWLLSIDSSNRSEP
RFYYQTQPVGELYFGQRFISPDVAKKP
>Mature_187_residues
MRIFPILLSLMLSFAVLANNAPQTKDDIAINKTYDLFSEAFDKLNAALIGEAYTESACYIPERHDKEIIRGRDAIVSVYE
KFFGKIRSKNARIEVDFRVIDRSRAGDSVTDVGYYLIRFHPASDTGEPVSEYAGKFVTVSRKQADGNWLLSIDSSNRSEP
RFYYQTQPVGELYFGQRFISPDVAKKP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21237; Mature: 21237

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIFPILLSLMLSFAVLANNAPQTKDDIAINKTYDLFSEAFDKLNAALIGEAYTESACYI
CCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PERHDKEIIRGRDAIVSVYEKFFGKIRSKNARIEVDFRVIDRSRAGDSVTDVGYYLIRFH
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCHHHCEEEEEEEE
PASDTGEPVSEYAGKFVTVSRKQADGNWLLSIDSSNRSEPRFYYQTQPVGELYFGQRFIS
CCCCCCCCHHHHCCCEEEEEEEECCCCEEEEECCCCCCCCEEEEECCCCCHHHHCCEECC
PDVAKKP
CCCCCCC
>Mature Secondary Structure
MRIFPILLSLMLSFAVLANNAPQTKDDIAINKTYDLFSEAFDKLNAALIGEAYTESACYI
CCHHHHHHHHHHHHHHHHCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PERHDKEIIRGRDAIVSVYEKFFGKIRSKNARIEVDFRVIDRSRAGDSVTDVGYYLIRFH
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCHHHCEEEEEEEE
PASDTGEPVSEYAGKFVTVSRKQADGNWLLSIDSSNRSEPRFYYQTQPVGELYFGQRFIS
CCCCCCCCHHHHCCCEEEEEEEECCCCEEEEECCCCCCCCEEEEECCCCCHHHHCCEECC
PDVAKKP
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA