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The map label for this gene is rarA [H]

Identifier: 119774909

GI number: 119774909

Start: 2169443

End: 2170771

Strand: Direct

Name: rarA [H]

Synonym: Sama_1774

Alternate gene names: 119774909

Gene position: 2169443-2170771 (Clockwise)

Preceding gene: 119774908

Following gene: 119774910

Centisome position: 50.38

GC content: 55.38

Gene sequence:

>1329_bases
GTGTCGTTGAGTTTTGATTTCAGCCCCGACTTCAACCCACTGGCTGCCCGTATGCGTCCGGCCAGTGTTGAGGAGTATAT
AGGTCAGTCACACCTCCTCGGAGAGGGTAAGCCACTGCGGCAGGCATTGCTTGCCGGTAAGGTGCACTCGATGCTGCTTT
GGGGGCCACCAGGCACTGGCAAAACCACGCTTGCCGAACTCGTCGCACGCTACGCCAATGCCCATGTTGAGCGTATCTCT
GCTGTCACGTCCGGGGTCAAGGAAATCAGGGCCGCTATTGAACAGGCGAAAAACGTGGCTCAGTCCCGTGGACAGCGAAC
CTTGCTGTTTGTGGACGAGGTCCATCGTTTTAATAAGAGTCAACAGGATGCCTTTCTGCCGTTTATCGAAGACGGTACAG
TGATTTTTATCGGCGCCACTACCGAAAACCCGTCCTTTGAAGTCAATAATGCGCTGCTGTCGCGCTGCCGCGTGTATCTC
ATCAAACGGCTTGAGGATGATGCGATTGGGCAGATCCTGGCACAGGCCAACAGCGATGAGGCGAGGGGACTTGGCAAACG
CGGTCTGTTGCTAAAGGCAGAACTCAAATCTGCCATCGCCAGGCTTTGCGACGGCGATGCCCGCAAGGCCCTCAATTTAC
TTGAACTCATGTCTGACTTACTGCCAGATGGCGGTGAGTACAATCTTGAACTTTTATCCGAGGTCGCCGGGCATCAGGCT
GCAGGTTATGACAAAAATGGCGACCAGTATTACGACCTCATCAGTGCAGTGCATAAGTCCATTCGTGGCTCGGCGCCGGA
TGCCGCCCTCTACTGGTTTTGCCGCATTCTTGAAGGCGGCGGCGATCCCTTGTATGTGGCAAGGCGTCTTCTTGCCATTG
CCTCGGAAGACATTGGCAATGCCGACCCCAATGCCATGACAGTCGCTCTGAATGCCTGGGACTGTTTTCACCGCGTCGGA
CCAGCCGAGGGGGAACGCGCTATCGCTCAGGCGGTGATTTACCTTGCCAGCGCGCCAAAAAGTAACGCCGTCTACACCGC
CTTTAAGGCCGCCCGGGTCCTTGCCAGAGAAACAGGCAACGCGCCTGTGCCCAATCATTTGCGTAACGCCCCCACCAAGC
TCATGAGTGAACTTGGCGTCGGCGAAGGTTATCGTTATGCCCACGATGAGGATGGGGCCTTTGCCGCGGGGGAAAATTAT
TTTCCCGAAGTCCTGCAGCACAGCCGAATTTACCAGCCCACCGCGCGGGGTTTTGAAAAGCGCATTCGAGATAAACTTGC
TCATCTCGACGCACTGAATCAACAAAGTGGGCGAAAACGCTATGAATAA

Upstream 100 bases:

>100_bases
AGCAAGCGGCAGTGACCGATGCCGACGAGAGCCTATTTCAGTTTCAGATCCCCGATGGCGTCAGCATTGACGATCAGCGT
CGTCAGTAAAAGGATGCGCT

Downstream 100 bases:

>100_bases
CGTGCTCTATATTGCCGCGGGAGGTGCTATAGGTGCAGTTTTGCGCTATTCCATCTCGATTCTTGCGTTACAACTCTTTG
GCACCGGATTTCCTTTTGGT

Product: recombination factor protein RarA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 442; Mature: 441

Protein sequence:

>442_residues
MSLSFDFSPDFNPLAARMRPASVEEYIGQSHLLGEGKPLRQALLAGKVHSMLLWGPPGTGKTTLAELVARYANAHVERIS
AVTSGVKEIRAAIEQAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEVNNALLSRCRVYL
IKRLEDDAIGQILAQANSDEARGLGKRGLLLKAELKSAIARLCDGDARKALNLLELMSDLLPDGGEYNLELLSEVAGHQA
AGYDKNGDQYYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDIGNADPNAMTVALNAWDCFHRVG
PAEGERAIAQAVIYLASAPKSNAVYTAFKAARVLARETGNAPVPNHLRNAPTKLMSELGVGEGYRYAHDEDGAFAAGENY
FPEVLQHSRIYQPTARGFEKRIRDKLAHLDALNQQSGRKRYE

Sequences:

>Translated_442_residues
MSLSFDFSPDFNPLAARMRPASVEEYIGQSHLLGEGKPLRQALLAGKVHSMLLWGPPGTGKTTLAELVARYANAHVERIS
AVTSGVKEIRAAIEQAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEVNNALLSRCRVYL
IKRLEDDAIGQILAQANSDEARGLGKRGLLLKAELKSAIARLCDGDARKALNLLELMSDLLPDGGEYNLELLSEVAGHQA
AGYDKNGDQYYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDIGNADPNAMTVALNAWDCFHRVG
PAEGERAIAQAVIYLASAPKSNAVYTAFKAARVLARETGNAPVPNHLRNAPTKLMSELGVGEGYRYAHDEDGAFAAGENY
FPEVLQHSRIYQPTARGFEKRIRDKLAHLDALNQQSGRKRYE
>Mature_441_residues
SLSFDFSPDFNPLAARMRPASVEEYIGQSHLLGEGKPLRQALLAGKVHSMLLWGPPGTGKTTLAELVARYANAHVERISA
VTSGVKEIRAAIEQAKNVAQSRGQRTLLFVDEVHRFNKSQQDAFLPFIEDGTVIFIGATTENPSFEVNNALLSRCRVYLI
KRLEDDAIGQILAQANSDEARGLGKRGLLLKAELKSAIARLCDGDARKALNLLELMSDLLPDGGEYNLELLSEVAGHQAA
GYDKNGDQYYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDIGNADPNAMTVALNAWDCFHRVGP
AEGERAIAQAVIYLASAPKSNAVYTAFKAARVLARETGNAPVPNHLRNAPTKLMSELGVGEGYRYAHDEDGAFAAGENYF
PEVLQHSRIYQPTARGFEKRIRDKLAHLDALNQQSGRKRYE

Specific function: Unknown

COG id: COG2256

COG function: function code L; ATPase related to the helicase subunit of the Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rarA family [H]

Homologues:

Organism=Homo sapiens, GI18426902, Length=433, Percent_Identity=43.1870669745958, Blast_Score=319, Evalue=4e-87,
Organism=Homo sapiens, GI18426904, Length=433, Percent_Identity=39.2609699769053, Blast_Score=265, Evalue=4e-71,
Organism=Escherichia coli, GI1787119, Length=445, Percent_Identity=66.0674157303371, Blast_Score=585, Evalue=1e-168,
Organism=Saccharomyces cerevisiae, GI6324111, Length=428, Percent_Identity=39.2523364485981, Blast_Score=303, Evalue=5e-83,
Organism=Saccharomyces cerevisiae, GI6324039, Length=235, Percent_Identity=27.6595744680851, Blast_Score=75, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR003959
- InterPro:   IPR021886 [H]

Pfam domain/function: PF00004 AAA; PF12002 MgsA_C [H]

EC number: NA

Molecular weight: Translated: 48361; Mature: 48230

Theoretical pI: Translated: 6.91; Mature: 6.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLSFDFSPDFNPLAARMRPASVEEYIGQSHLLGEGKPLRQALLAGKVHSMLLWGPPGTG
CCCCCCCCCCCCHHHHHCCCCHHHHHCCCHHCCCCCHHHHHHHHHHHHHHEEEECCCCCC
KTTLAELVARYANAHVERISAVTSGVKEIRAAIEQAKNVAQSRGQRTLLFVDEVHRFNKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCC
QQDAFLPFIEDGTVIFIGATTENPSFEVNNALLSRCRVYLIKRLEDDAIGQILAQANSDE
CCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHH
ARGLGKRGLLLKAELKSAIARLCDGDARKALNLLELMSDLLPDGGEYNLELLSEVAGHQA
HHCCCCCCCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
AGYDKNGDQYYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDIGN
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
ADPNAMTVALNAWDCFHRVGPAEGERAIAQAVIYLASAPKSNAVYTAFKAARVLARETGN
CCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
APVPNHLRNAPTKLMSELGVGEGYRYAHDEDGAFAAGENYFPEVLQHSRIYQPTARGFEK
CCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCHHHHHHHH
RIRDKLAHLDALNQQSGRKRYE
HHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
SLSFDFSPDFNPLAARMRPASVEEYIGQSHLLGEGKPLRQALLAGKVHSMLLWGPPGTG
CCCCCCCCCCCHHHHHCCCCHHHHHCCCHHCCCCCHHHHHHHHHHHHHHEEEECCCCCC
KTTLAELVARYANAHVERISAVTSGVKEIRAAIEQAKNVAQSRGQRTLLFVDEVHRFNKS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEHHHHHHHCCC
QQDAFLPFIEDGTVIFIGATTENPSFEVNNALLSRCRVYLIKRLEDDAIGQILAQANSDE
CCCCCCCEECCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHH
ARGLGKRGLLLKAELKSAIARLCDGDARKALNLLELMSDLLPDGGEYNLELLSEVAGHQA
HHCCCCCCCEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCC
AGYDKNGDQYYDLISAVHKSIRGSAPDAALYWFCRILEGGGDPLYVARRLLAIASEDIGN
CCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC
ADPNAMTVALNAWDCFHRVGPAEGERAIAQAVIYLASAPKSNAVYTAFKAARVLARETGN
CCCCEEEEEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCC
APVPNHLRNAPTKLMSELGVGEGYRYAHDEDGAFAAGENYFPEVLQHSRIYQPTARGFEK
CCCCHHHHCCHHHHHHHCCCCCCCCCCCCCCCCEECCCCHHHHHHHHCCCCCHHHHHHHH
RIRDKLAHLDALNQQSGRKRYE
HHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]