| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is hypF [H]
Identifier: 119774810
GI number: 119774810
Start: 2046154
End: 2048469
Strand: Reverse
Name: hypF [H]
Synonym: Sama_1674
Alternate gene names: 119774810
Gene position: 2048469-2046154 (Counterclockwise)
Preceding gene: 119774811
Following gene: 119774809
Centisome position: 47.57
GC content: 57.51
Gene sequence:
>2316_bases ATGAGTGTAAAGATAAGCCTTCACATCACCGGCATAGTTCAGGGGGTTGGGTTTCGGCCCCATGTATTTCGCCTCGCCCA CGAGCTCGGGCTTGGCGGCAGTATCCGTAACGATGCTGAAGGCGTCTTTATTCGTTTGATGGGTGCCCAGCATAAAGTCG ATGACTTCATTGAAAAGCTGCGCAGTGCCCCGCCGCCACTGGCGCGGATAGACGGTTTCACCCTGATAGCCGATGACGGT TCTGATCTTGACGAAACGCGCTTCGTGATTGAAGAAAGCCAGGCCGGCGGCGAGGCTCAGGTTGTGGTATCACCGGATAA AAGCATGTGTCCGGACTGCCTGGCTGATATCCGCAACCCAAGCGACAGGCACTACCGCTACCCCTTTACCAACTGCACCA ACTGCGGCCCCCGCTACACCCTGATAAAAGCCTTGCCCTACGACAGAAAACACACCTCGATGGCGCACTTTGCCATGTGC GCTCAGTGTGAAGCCGAGTATAAAAATCCGCTGGACCGACGCTATCACGCCCAGCCGGTGAGTTGTCCAAACTGCGGGCC CAAGCTCAGTCTCACCGGTCCGGACGGCAGCCTTATCAGCAGCGATGCAGAGTTCTGTCTGGATGAGTGTGCGCGACTGT TAAAACAGGGCGCCATATTCGCTATCAAAGGGCTTGGCGGCTTTCATCTGGTGTGTGATGCCACCCATGAGGAGGCCGTA AGCAGCCTGCGAACGCGTAAAGTTCGCCCGGCTAAGCCCCTCGCAGTCATGGTCAAAGATATTGCCATGGCCAGAAGCTT CGCCGATGGCGCACAGGAGGAATGGCAACTGCTCTCTTCCCGGGAGCGCCCCATCGTCATTATGAAAAAAGCGGCTGAGC AGCATCGCGCAGTGCCAAAAGATACCCAGCACCGCGAACTTGCCGCCTCGGTGGCACCCGGCATCGACCGGATTGGACTT TTTTTACCCTACACACCACTGCATGCCTTGCTGCTGGACAGTGTTGACCGCCCGCTGGTCGCCACCAGCGCCAACCGCAG TGGTGAGCCAATCATCATAGCGGCTGTAGATATCCACCAAAAACTCGCAGGCGTGGTGGACTTTATTCTCGACCACGATC GCCCCATCGTATCGGGGTGTGATGACAGCGTGGTCCAATGGTGTGCCGGACAGCTCCAGGTTATCCGTCTCGCCAGAGGC TATGCGCCGCTGGCAATGCTCAGCCCTAAACCCAGCAAGTCCCATCTGATGGCGGTGGGGCCTCAGCAAAAAAATACCCT GGGATTTGGCCTTGGCCATAACCTCTTCTTAAGCCCCCATATCGGCGATCTCTTCAGTATTGAGGCCGAAGATTATTTTA TTCGAACACTGGAGAGTTTTAAGCGCCTCTATCAGGTAGAGCCTGGCTGCGTGGTAGCCGACCATCACCCGGATTATGCC CCGAGCCGCTTTGCCCGGCGCTATGCCCAAAGTGGCGATCGCGCCATTGAACTGCTCACTGTGCAGCACCATTTTGCCCA CATATTGTCGGTGATGGCGGCCAATTCCCGCAGCGAACCCGTTCTGGGATTCAGTTTTGATGGCACGGGTCTCGGTGACG ATATGAGCCTGTGGGGCGGCGAAGTGCTGCTGTGCAGCGCAACCCACTTCGAGCGTCTCGGAGGACTGATGCCCTTTGCC CTGCCCGGCGGGGACAAGGCCAGCAGCGAACCCTGGCGGGTGCTGTTAAGCCTGCTCGCGGGTCATCTTTCGGCCTCACA GCTTCAGGGACTTCCCTGTTTTGCCCATTTAAGTCAGCCCATGCTGAACAACCACCTCAAAGTCATAGGGCGTCCCGGCA CCTTGCAAAGCTCATCCATGGGAAGGCTCTTTGATGCGGCCGCCGCCTTGCTGGGTATCTGCCAACGAGTCGAGTTTGAA GGCCAGGCAGGCATGTTACTGGAAGCCTTTGCCGCCCGGGCAACCGGCCCCATCCCCACTCTGGTTCTGGAAGATAAACA GGGCCAGTGGGACGGTGCAGCGCTGCTGGTGTCTATGCTGGAGCAGATGGACACGTTGGATACCTCCCCAGAATGCCTGG CGAACGCTTTTATCAATGCCATCGCCGATGCCATCGCCGAGAAAGCGCGTCATTATCCCAATTTGCCCGTGGCACTGAGC GGCGGCGTGTTCCAAAGCCGCACTCTCGCCAATGCCACTGCCCAGAGGCTTTCACAACAAGGGCTTAAGCTGCTGCCATG GGGGCAGGTCCCGGTAAATGATGGTGGTATCGCCCTCGGCCAACTTTGGTACGCAGTTCACAGTTTTGGTCAATAA
Upstream 100 bases:
>100_bases GCAGCCTGTATACTGAAACTCCCAGACGTTTTGGCGCCCTTGGACGGGAAACGCATTCGCTTAAAGACTGACATCGAAAA ATAAGGCAATACGGTAACCC
Downstream 100 bases:
>100_bases GTGCGCCAGATTGTCCCGTCATTCCGAAATGCTGACCCACATCAAACCTTTCGTTAATCAGCTGTATCAGAATTGTGCCA AATAGCTCAAGGAGACTCCC
Product: hydrogenase maturation protein HypF
Products: NA
Alternate protein names: Carbamoyl phosphate-converting enzyme hypF; [NiFe]-hydrogenase maturation factor hypF; Hydrogenase maturation protein hypF [H]
Number of amino acids: Translated: 771; Mature: 770
Protein sequence:
>771_residues MSVKISLHITGIVQGVGFRPHVFRLAHELGLGGSIRNDAEGVFIRLMGAQHKVDDFIEKLRSAPPPLARIDGFTLIADDG SDLDETRFVIEESQAGGEAQVVVSPDKSMCPDCLADIRNPSDRHYRYPFTNCTNCGPRYTLIKALPYDRKHTSMAHFAMC AQCEAEYKNPLDRRYHAQPVSCPNCGPKLSLTGPDGSLISSDAEFCLDECARLLKQGAIFAIKGLGGFHLVCDATHEEAV SSLRTRKVRPAKPLAVMVKDIAMARSFADGAQEEWQLLSSRERPIVIMKKAAEQHRAVPKDTQHRELAASVAPGIDRIGL FLPYTPLHALLLDSVDRPLVATSANRSGEPIIIAAVDIHQKLAGVVDFILDHDRPIVSGCDDSVVQWCAGQLQVIRLARG YAPLAMLSPKPSKSHLMAVGPQQKNTLGFGLGHNLFLSPHIGDLFSIEAEDYFIRTLESFKRLYQVEPGCVVADHHPDYA PSRFARRYAQSGDRAIELLTVQHHFAHILSVMAANSRSEPVLGFSFDGTGLGDDMSLWGGEVLLCSATHFERLGGLMPFA LPGGDKASSEPWRVLLSLLAGHLSASQLQGLPCFAHLSQPMLNNHLKVIGRPGTLQSSSMGRLFDAAAALLGICQRVEFE GQAGMLLEAFAARATGPIPTLVLEDKQGQWDGAALLVSMLEQMDTLDTSPECLANAFINAIADAIAEKARHYPNLPVALS GGVFQSRTLANATAQRLSQQGLKLLPWGQVPVNDGGIALGQLWYAVHSFGQ
Sequences:
>Translated_771_residues MSVKISLHITGIVQGVGFRPHVFRLAHELGLGGSIRNDAEGVFIRLMGAQHKVDDFIEKLRSAPPPLARIDGFTLIADDG SDLDETRFVIEESQAGGEAQVVVSPDKSMCPDCLADIRNPSDRHYRYPFTNCTNCGPRYTLIKALPYDRKHTSMAHFAMC AQCEAEYKNPLDRRYHAQPVSCPNCGPKLSLTGPDGSLISSDAEFCLDECARLLKQGAIFAIKGLGGFHLVCDATHEEAV SSLRTRKVRPAKPLAVMVKDIAMARSFADGAQEEWQLLSSRERPIVIMKKAAEQHRAVPKDTQHRELAASVAPGIDRIGL FLPYTPLHALLLDSVDRPLVATSANRSGEPIIIAAVDIHQKLAGVVDFILDHDRPIVSGCDDSVVQWCAGQLQVIRLARG YAPLAMLSPKPSKSHLMAVGPQQKNTLGFGLGHNLFLSPHIGDLFSIEAEDYFIRTLESFKRLYQVEPGCVVADHHPDYA PSRFARRYAQSGDRAIELLTVQHHFAHILSVMAANSRSEPVLGFSFDGTGLGDDMSLWGGEVLLCSATHFERLGGLMPFA LPGGDKASSEPWRVLLSLLAGHLSASQLQGLPCFAHLSQPMLNNHLKVIGRPGTLQSSSMGRLFDAAAALLGICQRVEFE GQAGMLLEAFAARATGPIPTLVLEDKQGQWDGAALLVSMLEQMDTLDTSPECLANAFINAIADAIAEKARHYPNLPVALS GGVFQSRTLANATAQRLSQQGLKLLPWGQVPVNDGGIALGQLWYAVHSFGQ >Mature_770_residues SVKISLHITGIVQGVGFRPHVFRLAHELGLGGSIRNDAEGVFIRLMGAQHKVDDFIEKLRSAPPPLARIDGFTLIADDGS DLDETRFVIEESQAGGEAQVVVSPDKSMCPDCLADIRNPSDRHYRYPFTNCTNCGPRYTLIKALPYDRKHTSMAHFAMCA QCEAEYKNPLDRRYHAQPVSCPNCGPKLSLTGPDGSLISSDAEFCLDECARLLKQGAIFAIKGLGGFHLVCDATHEEAVS SLRTRKVRPAKPLAVMVKDIAMARSFADGAQEEWQLLSSRERPIVIMKKAAEQHRAVPKDTQHRELAASVAPGIDRIGLF LPYTPLHALLLDSVDRPLVATSANRSGEPIIIAAVDIHQKLAGVVDFILDHDRPIVSGCDDSVVQWCAGQLQVIRLARGY APLAMLSPKPSKSHLMAVGPQQKNTLGFGLGHNLFLSPHIGDLFSIEAEDYFIRTLESFKRLYQVEPGCVVADHHPDYAP SRFARRYAQSGDRAIELLTVQHHFAHILSVMAANSRSEPVLGFSFDGTGLGDDMSLWGGEVLLCSATHFERLGGLMPFAL PGGDKASSEPWRVLLSLLAGHLSASQLQGLPCFAHLSQPMLNNHLKVIGRPGTLQSSSMGRLFDAAAALLGICQRVEFEG QAGMLLEAFAARATGPIPTLVLEDKQGQWDGAALLVSMLEQMDTLDTSPECLANAFINAIADAIAEKARHYPNLPVALSG GVFQSRTLANATAQRLSQQGLKLLPWGQVPVNDGGIALGQLWYAVHSFGQ
Specific function: Along with hypE, it catalyzes the synthesis of the CN ligands of the active site iron of [NiFe]-hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carb
COG id: COG0068
COG function: function code O; Hydrogenase maturation factor
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 YrdC-like domain [H]
Homologues:
Organism=Escherichia coli, GI2367152, Length=773, Percent_Identity=37.51617076326, Blast_Score=395, Evalue=1e-111,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001792 - InterPro: IPR017968 - InterPro: IPR004421 - InterPro: IPR017945 - InterPro: IPR006070 - InterPro: IPR011125 [H]
Pfam domain/function: PF00708 Acylphosphatase; PF01300 Sua5_yciO_yrdC; PF07503 zf-HYPF [H]
EC number: NA
Molecular weight: Translated: 83715; Mature: 83584
Theoretical pI: Translated: 6.76; Mature: 6.76
Prosite motif: PS00150 ACYLPHOSPHATASE_1 ; PS51160 ACYLPHOSPHATASE_3 ; PS51163 YRDC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 4.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVKISLHITGIVQGVGFRPHVFRLAHELGLGGSIRNDAEGVFIRLMGAQHKVDDFIEKL CEEEEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH RSAPPPLARIDGFTLIADDGSDLDETRFVIEESQAGGEAQVVVSPDKSMCPDCLADIRNP HCCCCCCHHCCCEEEEECCCCCCCHHHEEEEECCCCCCEEEEECCCCCCCHHHHHHCCCC SDRHYRYPFTNCTNCGPRYTLIKALPYDRKHTSMAHFAMCAQCEAEYKNPLDRRYHAQPV CCCCEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC SCPNCGPKLSLTGPDGSLISSDAEFCLDECARLLKQGAIFAIKGLGGFHLVCDATHEEAV CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECHHHHHH SSLRTRKVRPAKPLAVMVKDIAMARSFADGAQEEWQLLSSRERPIVIMKKAAEQHRAVPK HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEHHHHHHCCCCC DTQHRELAASVAPGIDRIGLFLPYTPLHALLLDSVDRPLVATSANRSGEPIIIAAVDIHQ CCHHHHHHHHHCCCHHHHCEECCCHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEHHHHH KLAGVVDFILDHDRPIVSGCDDSVVQWCAGQLQVIRLARGYAPLAMLSPKPSKSHLMAVG HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEC PQQKNTLGFGLGHNLFLSPHIGDLFSIEAEDYFIRTLESFKRLYQVEPGCVVADHHPDYA CCCCCCEEECCCCCEEECCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC PSRFARRYAQSGDRAIELLTVQHHFAHILSVMAANSRSEPVLGFSFDGTGLGDDMSLWGG HHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCC EVLLCSATHFERLGGLMPFALPGGDKASSEPWRVLLSLLAGHLSASQLQGLPCFAHLSQP CEEEEECHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCHHHHHCCH MLNNHLKVIGRPGTLQSSSMGRLFDAAAALLGICQRVEFEGQAGMLLEAFAARATGPIPT HHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCE LVLEDKQGQWDGAALLVSMLEQMDTLDTSPECLANAFINAIADAIAEKARHYPNLPVALS EEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC GGVFQSRTLANATAQRLSQQGLKLLPWGQVPVNDGGIALGQLWYAVHSFGQ CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure SVKISLHITGIVQGVGFRPHVFRLAHELGLGGSIRNDAEGVFIRLMGAQHKVDDFIEKL EEEEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCHHHHHHHHH RSAPPPLARIDGFTLIADDGSDLDETRFVIEESQAGGEAQVVVSPDKSMCPDCLADIRNP HCCCCCCHHCCCEEEEECCCCCCCHHHEEEEECCCCCCEEEEECCCCCCCHHHHHHCCCC SDRHYRYPFTNCTNCGPRYTLIKALPYDRKHTSMAHFAMCAQCEAEYKNPLDRRYHAQPV CCCCEECCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCHHHCCCCCCC SCPNCGPKLSLTGPDGSLISSDAEFCLDECARLLKQGAIFAIKGLGGFHLVCDATHEEAV CCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCEEEEECCCCEEEEEECHHHHHH SSLRTRKVRPAKPLAVMVKDIAMARSFADGAQEEWQLLSSRERPIVIMKKAAEQHRAVPK HHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCEEEEEHHHHHHCCCCC DTQHRELAASVAPGIDRIGLFLPYTPLHALLLDSVDRPLVATSANRSGEPIIIAAVDIHQ CCHHHHHHHHHCCCHHHHCEECCCHHHHHHHHHCCCCCEEEECCCCCCCEEEEEEHHHHH KLAGVVDFILDHDRPIVSGCDDSVVQWCAGQLQVIRLARGYAPLAMLSPKPSKSHLMAVG HHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCEEEEC PQQKNTLGFGLGHNLFLSPHIGDLFSIEAEDYFIRTLESFKRLYQVEPGCVVADHHPDYA CCCCCCEEECCCCCEEECCCCCCEEEECCHHHHHHHHHHHHHHHHCCCCCEEECCCCCCC PSRFARRYAQSGDRAIELLTVQHHFAHILSVMAANSRSEPVLGFSFDGTGLGDDMSLWGG HHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCHHHCCC EVLLCSATHFERLGGLMPFALPGGDKASSEPWRVLLSLLAGHLSASQLQGLPCFAHLSQP CEEEEECHHHHHHCCCCCEECCCCCCCCCCHHHHHHHHHHHHCCHHHHCCCCHHHHHCCH MLNNHLKVIGRPGTLQSSSMGRLFDAAAALLGICQRVEFEGQAGMLLEAFAARATGPIPT HHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCE LVLEDKQGQWDGAALLVSMLEQMDTLDTSPECLANAFINAIADAIAEKARHYPNLPVALS EEEECCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEC GGVFQSRTLANATAQRLSQQGLKLLPWGQVPVNDGGIALGQLWYAVHSFGQ CCCHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8590279; 8905231 [H]