Click here to switch to the map view.

The map label for this gene is yjbQ [H]

Identifier: 119774801

GI number: 119774801

Start: 2038527

End: 2038946

Strand: Reverse

Name: yjbQ [H]

Synonym: Sama_1665

Alternate gene names: 119774801

Gene position: 2038946-2038527 (Counterclockwise)

Preceding gene: 119774804

Following gene: 119774797

Centisome position: 47.35

GC content: 54.29

Gene sequence:

>420_bases
ATGTGGTTTCAAAAAAGCTTCAGCCTTGGCCCCAAGAGCCGCGGATTTCATTTGGTCACAGAAGAAATAACCGCCCAGCT
GCCAGAGCTTGCCGATGTCAGTGTGGGATTACTGCATCTGCAGCTGTTGCATACCTCTGCATCACTGAGCCTCAATGAAA
ATGCCGACCCCACGGTAAGACAGGACTTTGAAAGCTTCTTCAATCGGACAGTAAGGGAGAATGAGCCCTGGTATCGCCAC
GACTATGAAGGGCCTGACGATATGCCGGCGCACATTAAATCCAGTTTGCTGGGAACCAGTCTGATGCTGCCTATCAGCAA
AGGACGACTGGCCCTCGGCACCTGGCAGGGCATCTACCTTGGCGAGCACCGTAACTGTGGCGGTGAGCGGCGCATTATGG
CCACCCTGCAGGGGGAATAG

Upstream 100 bases:

>100_bases
CTTGCAATGTGTCTATTCTACCCCAAAGCTCATCCCAAGGCAGCGCTTGCATGGCTCAGAGCGCTTTCATACACTGCGGG
TTCAAAAAAGGAGATGTCTT

Downstream 100 bases:

>100_bases
CAGCGCAGCGAGAATAGCAGCGAAGCGAGAATAACGGCGCGGGGGAATAACAACGCAACCAACACAGGCGTCAGTAACAT
CTGCGTAGGCATTCTGCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MWFQKSFSLGPKSRGFHLVTEEITAQLPELADVSVGLLHLQLLHTSASLSLNENADPTVRQDFESFFNRTVRENEPWYRH
DYEGPDDMPAHIKSSLLGTSLMLPISKGRLALGTWQGIYLGEHRNCGGERRIMATLQGE

Sequences:

>Translated_139_residues
MWFQKSFSLGPKSRGFHLVTEEITAQLPELADVSVGLLHLQLLHTSASLSLNENADPTVRQDFESFFNRTVRENEPWYRH
DYEGPDDMPAHIKSSLLGTSLMLPISKGRLALGTWQGIYLGEHRNCGGERRIMATLQGE
>Mature_139_residues
MWFQKSFSLGPKSRGFHLVTEEITAQLPELADVSVGLLHLQLLHTSASLSLNENADPTVRQDFESFFNRTVRENEPWYRH
DYEGPDDMPAHIKSSLLGTSLMLPISKGRLALGTWQGIYLGEHRNCGGERRIMATLQGE

Specific function: Unknown

COG id: COG0432

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0047 family [H]

Homologues:

Organism=Escherichia coli, GI1790491, Length=139, Percent_Identity=68.3453237410072, Blast_Score=195, Evalue=8e-52,
Organism=Drosophila melanogaster, GI221476594, Length=137, Percent_Identity=59.1240875912409, Blast_Score=175, Evalue=8e-45,
Organism=Drosophila melanogaster, GI221476589, Length=137, Percent_Identity=59.1240875912409, Blast_Score=175, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001602 [H]

Pfam domain/function: PF01894 UPF0047 [H]

EC number: NA

Molecular weight: Translated: 15696; Mature: 15696

Theoretical pI: Translated: 6.23; Mature: 6.23

Prosite motif: PS01314 UPF0047

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFQKSFSLGPKSRGFHLVTEEITAQLPELADVSVGLLHLQLLHTSASLSLNENADPTVR
CCCCCCCCCCCCCCCEEEEHHHHHHHCCCHHCHHHHHHHHHHHHCCCCEEECCCCCCHHH
QDFESFFNRTVRENEPWYRHDYEGPDDMPAHIKSSLLGTSLMLPISKGRLALGTWQGIYL
HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCEEEEECCCEEEE
GEHRNCGGERRIMATLQGE
CCCCCCCCCEEEEEEECCC
>Mature Secondary Structure
MWFQKSFSLGPKSRGFHLVTEEITAQLPELADVSVGLLHLQLLHTSASLSLNENADPTVR
CCCCCCCCCCCCCCCEEEEHHHHHHHCCCHHCHHHHHHHHHHHHCCCCEEECCCCCCHHH
QDFESFFNRTVRENEPWYRHDYEGPDDMPAHIKSSLLGTSLMLPISKGRLALGTWQGIYL
HHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCEEEEEECCCEEEEECCCEEEE
GEHRNCGGERRIMATLQGE
CCCCCCCCCEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]