| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
Click here to switch to the map view.
The map label for this gene is gluP [H]
Identifier: 119774799
GI number: 119774799
Start: 2035563
End: 2036810
Strand: Direct
Name: gluP [H]
Synonym: Sama_1663
Alternate gene names: 119774799
Gene position: 2035563-2036810 (Clockwise)
Preceding gene: 119774798
Following gene: 119774800
Centisome position: 47.27
GC content: 58.17
Gene sequence:
>1248_bases ATGGCTTCCGGCGTACCTGTCACTGCCCGGCATGAAGGCGCATCCGAGGGGGGACGTTACGGCTTTGCGCTGACCTCACT CACCACATTGTTTTTTATGTGGGGTTTTATTACCTGTCTTAACGACATCCTTATTCCGCATCTGAAAGCCGTCTTCAGCC TGAACTATGCCCAGGCGATGTTAATTCAGTTTTGTTTCTTTGGTGCCTATTTTCTGGTGTCGGTACCGGCCGGTGTCCTG GTAAAACGCCTCGGCTACCAAAAGGGCATAGTGGTTGGCTTGTTAACTGCGGCGCTGGGCTGTGGTCTCTTTTATCCGGC GGCGGTATCGGCCACGTACGGCGTGTTTTTGGGGGCACTCTTTGTGCTTGCCAGCGGCATTACCGTGCTGCAGGTGGCGG CCAATCCCTATGTGACGGCGCTGGGACCGGTGCAAACAGCCTCAAGCCGTCTGACCCTGACCCAGGCGTTTAACTCCCTG GGTACCACCATAGCCCCGGCCTTTGGCTCTGTGCTTATCCTGTCGGTGGCCGTTGGCGCCTCTGCCGAGGCCGAAGCCGA TGCGGTCAAGCTGCCCTATCTGCTGCTGTGTGGCATGTTGATTGTGCTGGCGGTGGTGTTTGCACTGCTGAAATTGCCCC ATATCCATGACCAGGAAGATGAGGTGGCCGCGACTGGCCAGAGCGCGCTTGCCCATCGCCATCTGGTGCTCGGCGCCATA GGCATATTCGTTTATGTGGGCGGTGAAGTGGCCATTGGCAGCTTTTTGGTGAACTTTTTGGGTGAATCCCATGTGGCGGG CATGGCCGAGGCCGATGCAGCCCATTACATCGCCTTTTACTGGGGCGGTGCCATGGTGGGGCGTTTTATCGGTGCGGCCG TGATGCAAAAAGTGGATGCCGGCAAGGTGCTGGGCTTCAATGCCACCATGGCGGCCCTGCTGGTACTGGTTGCCATGAAC AGCAGCGGCGCCCTGGCCATGTGGGCGATTCTGGCGGTGGGGCTGTTCAACTCCATTATGTTTCCGACCATCTTCAGTCT GGCGCTGAAAAACCTGGGCCCGGCGACAGCCCAGGGCTCGGGTATTCTGTGTCTGGCGATTGTGGGCGGCGCCCTGGTGC CGCTGTTGCAGGGGCTTCTGGCTGATTCTGTCGGCTTGTCTGCCTCATTCATTCTGCCGGTGCTCTGCTATGGCTACATC CTCTTTTATGGCCTGAAAGGCTGTAAGCCTGTAGCCGCCAAGGCTTGA
Upstream 100 bases:
>100_bases CGCCTTGCATATGGGCCCGACGTGAAATACATGGGGTAAGCTTAGCTGTAGACCTCGACCATAAAATATTGAAATAACGA TAATAATCAAGGAGAAAACT
Downstream 100 bases:
>100_bases ATACCAGCACCTGTCGCCAGACATGAATGGCGACAGCGACAATAATGTCTGATAAAAGGCGCCGTCAGGGCGCTTTTTTA TTGGCTGAATACACAGGGGG
Product: glucose/galactose transporter
Products: Proton [Cytoplasm]; L-fucose [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 415; Mature: 414
Protein sequence:
>415_residues MASGVPVTARHEGASEGGRYGFALTSLTTLFFMWGFITCLNDILIPHLKAVFSLNYAQAMLIQFCFFGAYFLVSVPAGVL VKRLGYQKGIVVGLLTAALGCGLFYPAAVSATYGVFLGALFVLASGITVLQVAANPYVTALGPVQTASSRLTLTQAFNSL GTTIAPAFGSVLILSVAVGASAEAEADAVKLPYLLLCGMLIVLAVVFALLKLPHIHDQEDEVAATGQSALAHRHLVLGAI GIFVYVGGEVAIGSFLVNFLGESHVAGMAEADAAHYIAFYWGGAMVGRFIGAAVMQKVDAGKVLGFNATMAALLVLVAMN SSGALAMWAILAVGLFNSIMFPTIFSLALKNLGPATAQGSGILCLAIVGGALVPLLQGLLADSVGLSASFILPVLCYGYI LFYGLKGCKPVAAKA
Sequences:
>Translated_415_residues MASGVPVTARHEGASEGGRYGFALTSLTTLFFMWGFITCLNDILIPHLKAVFSLNYAQAMLIQFCFFGAYFLVSVPAGVL VKRLGYQKGIVVGLLTAALGCGLFYPAAVSATYGVFLGALFVLASGITVLQVAANPYVTALGPVQTASSRLTLTQAFNSL GTTIAPAFGSVLILSVAVGASAEAEADAVKLPYLLLCGMLIVLAVVFALLKLPHIHDQEDEVAATGQSALAHRHLVLGAI GIFVYVGGEVAIGSFLVNFLGESHVAGMAEADAAHYIAFYWGGAMVGRFIGAAVMQKVDAGKVLGFNATMAALLVLVAMN SSGALAMWAILAVGLFNSIMFPTIFSLALKNLGPATAQGSGILCLAIVGGALVPLLQGLLADSVGLSASFILPVLCYGYI LFYGLKGCKPVAAKA >Mature_414_residues ASGVPVTARHEGASEGGRYGFALTSLTTLFFMWGFITCLNDILIPHLKAVFSLNYAQAMLIQFCFFGAYFLVSVPAGVLV KRLGYQKGIVVGLLTAALGCGLFYPAAVSATYGVFLGALFVLASGITVLQVAANPYVTALGPVQTASSRLTLTQAFNSLG TTIAPAFGSVLILSVAVGASAEAEADAVKLPYLLLCGMLIVLAVVFALLKLPHIHDQEDEVAATGQSALAHRHLVLGAIG IFVYVGGEVAIGSFLVNFLGESHVAGMAEADAAHYIAFYWGGAMVGRFIGAAVMQKVDAGKVLGFNATMAALLVLVAMNS SGALAMWAILAVGLFNSIMFPTIFSLALKNLGPATAQGSGILCLAIVGGALVPLLQGLLADSVGLSASFILPVLCYGYIL FYGLKGCKPVAAKA
Specific function: Intake of glucose and galactose (Potential) [H]
COG id: COG0738
COG function: function code G; Fucose permease
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. FHS transporter (TC 2.A.1.7) family [H]
Homologues:
Organism=Escherichia coli, GI1789166, Length=421, Percent_Identity=34.916864608076, Blast_Score=230, Evalue=1e-61,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005964 - InterPro: IPR011701 - InterPro: IPR016196 [H]
Pfam domain/function: PF07690 MFS_1 [H]
EC number: NA
Molecular weight: Translated: 42828; Mature: 42697
Theoretical pI: Translated: 7.80; Mature: 7.80
Prosite motif: PS50850 MFS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.7 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.7 %Cys (Mature Protein) 2.4 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MASGVPVTARHEGASEGGRYGFALTSLTTLFFMWGFITCLNDILIPHLKAVFSLNYAQAM CCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIQFCFFGAYFLVSVPAGVLVKRLGYQKGIVVGLLTAALGCGLFYPAAVSATYGVFLGAL HHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVLASGITVLQVAANPYVTALGPVQTASSRLTLTQAFNSLGTTIAPAFGSVLILSVAVGA HHHHCCCCEEEEECCCCEEECCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC SAEAEADAVKLPYLLLCGMLIVLAVVFALLKLPHIHDQEDEVAATGQSALAHRHLVLGAI CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHH GIFVYVGGEVAIGSFLVNFLGESHVAGMAEADAAHYIAFYWGGAMVGRFIGAAVMQKVDA HHHHHCCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GKVLGFNATMAALLVLVAMNSSGALAMWAILAVGLFNSIMFPTIFSLALKNLGPATAQGS CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GILCLAIVGGALVPLLQGLLADSVGLSASFILPVLCYGYILFYGLKGCKPVAAKA CEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC >Mature Secondary Structure ASGVPVTARHEGASEGGRYGFALTSLTTLFFMWGFITCLNDILIPHLKAVFSLNYAQAM CCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH LIQFCFFGAYFLVSVPAGVLVKRLGYQKGIVVGLLTAALGCGLFYPAAVSATYGVFLGAL HHHHHHHHHHHHHHCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVLASGITVLQVAANPYVTALGPVQTASSRLTLTQAFNSLGTTIAPAFGSVLILSVAVGA HHHHCCCCEEEEECCCCEEECCCHHHCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCC SAEAEADAVKLPYLLLCGMLIVLAVVFALLKLPHIHDQEDEVAATGQSALAHRHLVLGAI CCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCHHHHHHHHHHHHHH GIFVYVGGEVAIGSFLVNFLGESHVAGMAEADAAHYIAFYWGGAMVGRFIGAAVMQKVDA HHHHHCCCHHHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC GKVLGFNATMAALLVLVAMNSSGALAMWAILAVGLFNSIMFPTIFSLALKNLGPATAQGS CCEECCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCC GILCLAIVGGALVPLLQGLLADSVGLSASFILPVLCYGYILFYGLKGCKPVAAKA CEEHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Proton [Periplasm]; L-fucose [Periplasm] [C]
Specific reaction: Proton [Periplasm] + L-fucose [Periplasm] = Proton [Cytoplasm] + L-fucose [Cytoplasm] [C]
General reaction: Permease [C]
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9168605 [H]