Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119774736

Identifier: 119774736

GI number: 119774736

Start: 1952808

End: 1953380

Strand: Direct

Name: 119774736

Synonym: Sama_1599

Alternate gene names: NA

Gene position: 1952808-1953380 (Clockwise)

Preceding gene: 119774735

Following gene: 119774737

Centisome position: 45.35

GC content: 52.71

Gene sequence:

>573_bases
ATGACGCCTGTGTCTAAGATGATGACGAGATCATCATGGATAACATCACTTACGCTCGCCGCGGTATTGGGGCTCGTTTT
GCCCAGTGCCATTGCCAATGAATTTCGCAGCGGCCCGGTTATTCAGGGCTACGGTGAGGTGGCCAGCCGGGTTAAGCAAA
CCTACCCTATACCCAAGGATCAACGCTTTAAAGTGGTCTTTGACTTGGCGGCTCAAAGTGAAGAGGGCAAGATAAATCGT
ACCATGGATAGCCTGGCACGTTTTATCAACATGCATGCTGCAGCAGGGGTTGATCCCAACAATATTCAGCTTGCCCTGGT
GGTCCATGGCAAGGCGGTGTTTGACGTACTGTCTGACGATGCGCATTTCAAAAAGCTCGCCCGTGGCAATGCCCAGGCAA
AGCTGCTCAAGGCGCTCATGGATAACGGCGTTCGGGTTATGGTATGTGGCCAAACGGCTGCCCATTTGGGCGTAGATAAC
AACATGCTGCTCCCGGGAGTCGAAATGTCCCTGTCAGCCATGTCGGCCCATGCAATACTCGCGCAGCAGGGTTATAGTCA
GAATCCATTCTGA

Upstream 100 bases:

>100_bases
ATCTCATTGATGTTAATCATGTTCTAAACTTGAGTCCTCCCTTTGCCTGTGTCAGACTCAAGTTTGATTCACAAAAGCAT
AACATTAATAGGGAGGCAAC

Downstream 100 bases:

>100_bases
GGAATGACCAAATTACAGAACACCGGCTTTTGCCGGTGTTTTATTTTGTGGCAAAGATAAAAACGGCGAACGCGGGATCG
CCTAAGGCGCCCTAAAAGAA

Product: hypothetical protein

Products: NA

Alternate protein names: Methyltransferase Type

Number of amino acids: Translated: 190; Mature: 189

Protein sequence:

>190_residues
MTPVSKMMTRSSWITSLTLAAVLGLVLPSAIANEFRSGPVIQGYGEVASRVKQTYPIPKDQRFKVVFDLAAQSEEGKINR
TMDSLARFINMHAAAGVDPNNIQLALVVHGKAVFDVLSDDAHFKKLARGNAQAKLLKALMDNGVRVMVCGQTAAHLGVDN
NMLLPGVEMSLSAMSAHAILAQQGYSQNPF

Sequences:

>Translated_190_residues
MTPVSKMMTRSSWITSLTLAAVLGLVLPSAIANEFRSGPVIQGYGEVASRVKQTYPIPKDQRFKVVFDLAAQSEEGKINR
TMDSLARFINMHAAAGVDPNNIQLALVVHGKAVFDVLSDDAHFKKLARGNAQAKLLKALMDNGVRVMVCGQTAAHLGVDN
NMLLPGVEMSLSAMSAHAILAQQGYSQNPF
>Mature_189_residues
TPVSKMMTRSSWITSLTLAAVLGLVLPSAIANEFRSGPVIQGYGEVASRVKQTYPIPKDQRFKVVFDLAAQSEEGKINRT
MDSLARFINMHAAAGVDPNNIQLALVVHGKAVFDVLSDDAHFKKLARGNAQAKLLKALMDNGVRVMVCGQTAAHLGVDNN
MLLPGVEMSLSAMSAHAILAQQGYSQNPF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20451; Mature: 20320

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
4.8 %Met     (Mature Protein)
5.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTPVSKMMTRSSWITSLTLAAVLGLVLPSAIANEFRSGPVIQGYGEVASRVKQTYPIPKD
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCCCCC
QRFKVVFDLAAQSEEGKINRTMDSLARFINMHAAAGVDPNNIQLALVVHGKAVFDVLSDD
CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHCCC
AHFKKLARGNAQAKLLKALMDNGVRVMVCGQTAAHLGVDNNMLLPGVEMSLSAMSAHAIL
HHHHHHHCCCHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCEECCCCHHHHHHHHHHHHH
AQQGYSQNPF
HHCCCCCCCC
>Mature Secondary Structure 
TPVSKMMTRSSWITSLTLAAVLGLVLPSAIANEFRSGPVIQGYGEVASRVKQTYPIPKD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHCCCCCC
QRFKVVFDLAAQSEEGKINRTMDSLARFINMHAAAGVDPNNIQLALVVHGKAVFDVLSDD
CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCHHHHHHHCCC
AHFKKLARGNAQAKLLKALMDNGVRVMVCGQTAAHLGVDNNMLLPGVEMSLSAMSAHAIL
HHHHHHHCCCHHHHHHHHHHCCCCEEEEECCHHHHCCCCCCEECCCCHHHHHHHHHHHHH
AQQGYSQNPF
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA