Click here to switch to the map view.

The map label for this gene is csgA [H]

Identifier: 119774735

GI number: 119774735

Start: 1952011

End: 1952700

Strand: Direct

Name: csgA [H]

Synonym: Sama_1598

Alternate gene names: 119774735

Gene position: 1952011-1952700 (Clockwise)

Preceding gene: 119774734

Following gene: 119774736

Centisome position: 45.33

GC content: 51.16

Gene sequence:

>690_bases
ATGACTCAGGTCGTCATCACAGGGGCAAATCGAGGTATTGGTCTTGCGTTGACCCAACTCTATTTGGATGCAGACTGTGA
TGTGGCGGCGTGCTGCCGACACCCGGAAGAAGCAAATGCGCTGCATGCCTTGATGGATAAGCACGAAGGGCTGGAACTCT
TTGAGCTCGACGTGAGTTCAAGTGATGCGATTGCCTCTCTGGGAGAGGCGCTTAAAGGTCGCCCCATCCACCGATTAATC
AATAATGCCGGTTATTACGGCCCCAAAGGCGTTAGCCTGGGTAATTCACCTGAAGATGAATGGCAGGCGATGTTTTCCAT
TAACTGCATTGGACCGCTCAAGTTGGTTGAATCGTTAACCGAGGGGTTATGCCAAGGGCAGGGCATTATTGCCAATCTGA
GCTCAAAGATGGGCAGTATGGCAGACAACAGCAGTGGTGGGGCTTATCTGTATCGCTCGGTCAAAGCCGCCCAAAACGCG
GTCACCAAGTCTCTTGCAATTGATTTGGCGCCTTACGGGGTAAAAGCGGTAGCTTTGCACCCGGGGTGGGTTAAAACTGC
CATGGGTGGACCAAATGCCCTGATTGATACTCAAACCTCTGCAGCGGGCTTATACAGGGTGATTGAAGGGTTGACCTCTG
CCCAAAGTGGTGGATTTTTTGATTATCAGGGAAACATTATTCCGTGGTAA

Upstream 100 bases:

>100_bases
CCACGGAGGCCAGAAAGGATAGGCAGTTTGTGCGTGAACTTCTGGAGCGTTGGCGCAGGATAAGGCCCCAGGGTTCAGAT
AACAACGGAGAGCAGGAACA

Downstream 100 bases:

>100_bases
TCAGTCCATCTCATTGATGTTAATCATGTTCTAAACTTGAGTCCTCCCTTTGCCTGTGTCAGACTCAAGTTTGATTCACA
AAAGCATAACATTAATAGGG

Product: putative oxidoreductase protein

Products: NA

Alternate protein names: C signal [H]

Number of amino acids: Translated: 229; Mature: 228

Protein sequence:

>229_residues
MTQVVITGANRGIGLALTQLYLDADCDVAACCRHPEEANALHALMDKHEGLELFELDVSSSDAIASLGEALKGRPIHRLI
NNAGYYGPKGVSLGNSPEDEWQAMFSINCIGPLKLVESLTEGLCQGQGIIANLSSKMGSMADNSSGGAYLYRSVKAAQNA
VTKSLAIDLAPYGVKAVALHPGWVKTAMGGPNALIDTQTSAAGLYRVIEGLTSAQSGGFFDYQGNIIPW

Sequences:

>Translated_229_residues
MTQVVITGANRGIGLALTQLYLDADCDVAACCRHPEEANALHALMDKHEGLELFELDVSSSDAIASLGEALKGRPIHRLI
NNAGYYGPKGVSLGNSPEDEWQAMFSINCIGPLKLVESLTEGLCQGQGIIANLSSKMGSMADNSSGGAYLYRSVKAAQNA
VTKSLAIDLAPYGVKAVALHPGWVKTAMGGPNALIDTQTSAAGLYRVIEGLTSAQSGGFFDYQGNIIPW
>Mature_228_residues
TQVVITGANRGIGLALTQLYLDADCDVAACCRHPEEANALHALMDKHEGLELFELDVSSSDAIASLGEALKGRPIHRLIN
NAGYYGPKGVSLGNSPEDEWQAMFSINCIGPLKLVESLTEGLCQGQGIIANLSSKMGSMADNSSGGAYLYRSVKAAQNAV
TKSLAIDLAPYGVKAVALHPGWVKTAMGGPNALIDTQTSAAGLYRVIEGLTSAQSGGFFDYQGNIIPW

Specific function: Cell-cell signaling protein required for fruiting body morphogenesis. Necessary for cellular aggregation, for spore differentiation, and for gene expression that is initiated after 6 hour of starvation [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To yeast YKL071W [H]

Homologues:

Organism=Caenorhabditis elegans, GI17559962, Length=246, Percent_Identity=30.8943089430894, Blast_Score=97, Evalue=9e-21,
Organism=Caenorhabditis elegans, GI72001658, Length=246, Percent_Identity=30.0813008130081, Blast_Score=95, Evalue=3e-20,
Organism=Caenorhabditis elegans, GI17558996, Length=249, Percent_Identity=30.1204819277108, Blast_Score=94, Evalue=5e-20,
Organism=Caenorhabditis elegans, GI17559964, Length=246, Percent_Identity=30.8943089430894, Blast_Score=93, Evalue=1e-19,
Organism=Caenorhabditis elegans, GI17532177, Length=247, Percent_Identity=30.7692307692308, Blast_Score=92, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI17558994, Length=248, Percent_Identity=29.8387096774194, Blast_Score=91, Evalue=4e-19,
Organism=Caenorhabditis elegans, GI17558990, Length=252, Percent_Identity=31.3492063492063, Blast_Score=90, Evalue=7e-19,
Organism=Caenorhabditis elegans, GI17558992, Length=251, Percent_Identity=31.0756972111554, Blast_Score=89, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI193207563, Length=248, Percent_Identity=28.2258064516129, Blast_Score=86, Evalue=1e-17,
Organism=Caenorhabditis elegans, GI17542178, Length=240, Percent_Identity=30.8333333333333, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17541382, Length=250, Percent_Identity=28.4, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24640547, Length=248, Percent_Identity=33.8709677419355, Blast_Score=142, Evalue=3e-34,
Organism=Drosophila melanogaster, GI24643142, Length=190, Percent_Identity=32.6315789473684, Blast_Score=74, Evalue=6e-14,
Organism=Drosophila melanogaster, GI23397609, Length=196, Percent_Identity=30.1020408163265, Blast_Score=68, Evalue=5e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 24073; Mature: 23941

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQVVITGANRGIGLALTQLYLDADCDVAACCRHPEEANALHALMDKHEGLELFELDVSS
CCEEEEECCCCCCHHEEEEEHHCCCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCC
SDAIASLGEALKGRPIHRLINNAGYYGPKGVSLGNSPEDEWQAMFSINCIGPLKLVESLT
CHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHEEEEECCCCHHHHHHHHH
EGLCQGQGIIANLSSKMGSMADNSSGGAYLYRSVKAAQNAVTKSLAIDLAPYGVKAVALH
HHHHCCCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEC
PGWVKTAMGGPNALIDTQTSAAGLYRVIEGLTSAQSGGFFDYQGNIIPW
CCHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCEECC
>Mature Secondary Structure 
TQVVITGANRGIGLALTQLYLDADCDVAACCRHPEEANALHALMDKHEGLELFELDVSS
CEEEEECCCCCCHHEEEEEHHCCCCCHHHHHCCCHHHHHHHHHHHHCCCCEEEEECCCC
SDAIASLGEALKGRPIHRLINNAGYYGPKGVSLGNSPEDEWQAMFSINCIGPLKLVESLT
CHHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCHHHHHEEEEECCCCHHHHHHHHH
EGLCQGQGIIANLSSKMGSMADNSSGGAYLYRSVKAAQNAVTKSLAIDLAPYGVKAVALH
HHHHCCCCCEEEHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHEEECCCCEEEEEEC
PGWVKTAMGGPNALIDTQTSAAGLYRVIEGLTSAQSGGFFDYQGNIIPW
CCHHHHCCCCCCCEEECCCHHHHHHHHHHHHHHCCCCCEEEECCCEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2152896; 2107980; 2118510; 1372277 [H]