| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774726
Identifier: 119774726
GI number: 119774726
Start: 1935621
End: 1936985
Strand: Direct
Name: 119774726
Synonym: Sama_1589
Alternate gene names: NA
Gene position: 1935621-1936985 (Clockwise)
Preceding gene: 119774725
Following gene: 119774727
Centisome position: 44.95
GC content: 55.02
Gene sequence:
>1365_bases ATGAAGAAACTTGCGATATTGTCTGCAGCGGTAATGTTCGCCTTGGGTGGCGGCGCTGCAGTGGCGAAAGTCTCCGAGGC CGAAGCGGCCAAACTGGGTACCAGCCTGACTCCCATGGGCGGTGAAATGGCTGCCAGTGCCGATGGTTCCATCCCAGCGT GGAATGGCGGTATCACAGCCGCACCTGCCGGTTACAAAAAGGGCGACCACCATCCTGATCCTTATTCAGCCGACAAGGTT GAATACACTGTGACCAAGGCTAATCTGGAGCAGTACAAGAGTTTGTTGACCCCCGGTCAAATCAAGCTGTTTGAACTGTA TCCCGACACTTTCAAAATGAACGTCTACAAAACCCAGCGCAGCGCATCTGCACCCCAGTGGGTGTACGATGCCACCAAGG CCAACGCATCCCGCGCCGAACTGGTTCAGGGTGGCAACGGTGTAGTGGGTGCCGCTGTGGGTATTCCATTCCCCATTCCA CAAAACGGTCTTGAGGCTATCTGGAACCATATCCTGCGTTTCCGTGGCGTAGACATTGAAACCCAGCGTAACCAGGCTGC ACCTGCCAAGGGCGGCGGTTATACCTTGGTTGAGTTGTCTGAGCAGCTGCGCTTTGAGTACTCACAGCCAGACATGACAC CTGAAAAGCTTAAAGAAAACAACACGCTTGCACTTTTCAAGCAGGTTGTGACCCAGCCAGCCCGTTTGGCCGGTACCGCG CTTTTGGTGAAAGAAACCCTGGATCAGGAAGCTCTGCCTCGTCAGGCATGGACCTATAACACCGGGCAGCGCCGGGTGCG CAAGGCGCCCAACGTAGCCTTTGATACCCCGGGTACCGTATCCGACGGTCTGCGCACCACTGACGACTACGATATGTTCA ACGGCTCTCCAAGCCGCTACAACTGGGAACTGGTGGGCAAAAAGGAAATCCTGATCCCGTACAACGACTACAAGTTGCAC TCAGATAAGGTCAAGTACGACGATATCCTGACTCCGGGTCACATCAACCCTGATCTGGTGCGTTGGGAGAAGCACCGCGT ATGGGAAGTGAAAGCGACCCTGAAAGACGGCATGCGCCACATCTACAAAACCCGCGTGTTCTTCCTGGATGAAGACTCAT GGCAGGTGTCTGCCACCGACATGTACGACAACCGTGATGAACTCTACCGTGTGGCCTTTGCCCATGGCTTGAACTATTAC GAAGTGCCTGCGCACTGGAGTACGCTGGAAGTGTTCCACGACCTGCAATCACGCCGTTATCTGGCCATTGGTCTGGATAA TGAAGGCAGCATGTACGACTTCGATGCCAAGCTGTCTGCGTCCGACTTCACACCGGACGCACTGCGTCGTGAAGGCGTGC GTTAA
Upstream 100 bases:
>100_bases TTACAACAGCTTCTTCGGTGGTGTAGGTACCACCAACGCCATGAGCGATCGCGATTATGTGTCGTTCAATATCAAGTATT CTATCTAAAGGACAATAACA
Downstream 100 bases:
>100_bases TTTTTATCAGCCAGTAAACCGGGGCGCATTCTGCGCCCCTAATTTTCAGCATTAGGATGTTTTTATGTTGCTGCGAGTCT TGTTGCCACTCTCTTTACTC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 454; Mature: 454
Protein sequence:
>454_residues MKKLAILSAAVMFALGGGAAVAKVSEAEAAKLGTSLTPMGGEMAASADGSIPAWNGGITAAPAGYKKGDHHPDPYSADKV EYTVTKANLEQYKSLLTPGQIKLFELYPDTFKMNVYKTQRSASAPQWVYDATKANASRAELVQGGNGVVGAAVGIPFPIP QNGLEAIWNHILRFRGVDIETQRNQAAPAKGGGYTLVELSEQLRFEYSQPDMTPEKLKENNTLALFKQVVTQPARLAGTA LLVKETLDQEALPRQAWTYNTGQRRVRKAPNVAFDTPGTVSDGLRTTDDYDMFNGSPSRYNWELVGKKEILIPYNDYKLH SDKVKYDDILTPGHINPDLVRWEKHRVWEVKATLKDGMRHIYKTRVFFLDEDSWQVSATDMYDNRDELYRVAFAHGLNYY EVPAHWSTLEVFHDLQSRRYLAIGLDNEGSMYDFDAKLSASDFTPDALRREGVR
Sequences:
>Translated_454_residues MKKLAILSAAVMFALGGGAAVAKVSEAEAAKLGTSLTPMGGEMAASADGSIPAWNGGITAAPAGYKKGDHHPDPYSADKV EYTVTKANLEQYKSLLTPGQIKLFELYPDTFKMNVYKTQRSASAPQWVYDATKANASRAELVQGGNGVVGAAVGIPFPIP QNGLEAIWNHILRFRGVDIETQRNQAAPAKGGGYTLVELSEQLRFEYSQPDMTPEKLKENNTLALFKQVVTQPARLAGTA LLVKETLDQEALPRQAWTYNTGQRRVRKAPNVAFDTPGTVSDGLRTTDDYDMFNGSPSRYNWELVGKKEILIPYNDYKLH SDKVKYDDILTPGHINPDLVRWEKHRVWEVKATLKDGMRHIYKTRVFFLDEDSWQVSATDMYDNRDELYRVAFAHGLNYY EVPAHWSTLEVFHDLQSRRYLAIGLDNEGSMYDFDAKLSASDFTPDALRREGVR >Mature_454_residues MKKLAILSAAVMFALGGGAAVAKVSEAEAAKLGTSLTPMGGEMAASADGSIPAWNGGITAAPAGYKKGDHHPDPYSADKV EYTVTKANLEQYKSLLTPGQIKLFELYPDTFKMNVYKTQRSASAPQWVYDATKANASRAELVQGGNGVVGAAVGIPFPIP QNGLEAIWNHILRFRGVDIETQRNQAAPAKGGGYTLVELSEQLRFEYSQPDMTPEKLKENNTLALFKQVVTQPARLAGTA LLVKETLDQEALPRQAWTYNTGQRRVRKAPNVAFDTPGTVSDGLRTTDDYDMFNGSPSRYNWELVGKKEILIPYNDYKLH SDKVKYDDILTPGHINPDLVRWEKHRVWEVKATLKDGMRHIYKTRVFFLDEDSWQVSATDMYDNRDELYRVAFAHGLNYY EVPAHWSTLEVFHDLQSRRYLAIGLDNEGSMYDFDAKLSASDFTPDALRREGVR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR010752 [H]
Pfam domain/function: PF07044 DUF1329 [H]
EC number: NA
Molecular weight: Translated: 50626; Mature: 50626
Theoretical pI: Translated: 6.69; Mature: 6.69
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLAILSAAVMFALGGGAAVAKVSEAEAAKLGTSLTPMGGEMAASADGSIPAWNGGITA CCHHHHHHHHHHHHCCCCHHEEEEHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCEEC APAGYKKGDHHPDPYSADKVEYTVTKANLEQYKSLLTPGQIKLFELYPDTFKMNVYKTQR CCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCEEEEEECCCCEEEEEEEECC SASAPQWVYDATKANASRAELVQGGNGVVGAAVGIPFPIPQNGLEAIWNHILRFRGVDIE CCCCCCEEEEHHHCCCCHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEE TQRNQAAPAKGGGYTLVELSEQLRFEYSQPDMTPEKLKENNTLALFKQVVTQPARLAGTA CCCCCCCCCCCCCEEEEEEHHHHCEECCCCCCCHHHHHCCCHHHHHHHHHCCCHHHHHHH LLVKETLDQEALPRQAWTYNTGQRRVRKAPNVAFDTPGTVSDGLRTTDDYDMFNGSPSRY HHHHHHHCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE NWELVGKKEILIPYNDYKLHSDKVKYDDILTPGHINPDLVRWEKHRVWEVKATLKDGMRH EEEEECCEEEEEECCCCEECCCCCCCCCCCCCCCCCHHHEECCCCEEEEEHHHHHHHHHH IYKTRVFFLDEDSWQVSATDMYDNRDELYRVAFAHGLNYYEVPAHWSTLEVFHDLQSRRY HHHEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCEE LAIGLDNEGSMYDFDAKLSASDFTPDALRREGVR EEEEECCCCCEEEECCCCCCCCCCHHHHHHCCCC >Mature Secondary Structure MKKLAILSAAVMFALGGGAAVAKVSEAEAAKLGTSLTPMGGEMAASADGSIPAWNGGITA CCHHHHHHHHHHHHCCCCHHEEEEHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCEEC APAGYKKGDHHPDPYSADKVEYTVTKANLEQYKSLLTPGQIKLFELYPDTFKMNVYKTQR CCCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHCCCCCEEEEEECCCCEEEEEEEECC SASAPQWVYDATKANASRAELVQGGNGVVGAAVGIPFPIPQNGLEAIWNHILRFRGVDIE CCCCCCEEEEHHHCCCCHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEE TQRNQAAPAKGGGYTLVELSEQLRFEYSQPDMTPEKLKENNTLALFKQVVTQPARLAGTA CCCCCCCCCCCCCEEEEEEHHHHCEECCCCCCCHHHHHCCCHHHHHHHHHCCCHHHHHHH LLVKETLDQEALPRQAWTYNTGQRRVRKAPNVAFDTPGTVSDGLRTTDDYDMFNGSPSRY HHHHHHHCHHHCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE NWELVGKKEILIPYNDYKLHSDKVKYDDILTPGHINPDLVRWEKHRVWEVKATLKDGMRH EEEEECCEEEEEECCCCEECCCCCCCCCCCCCCCCCHHHEECCCCEEEEEHHHHHHHHHH IYKTRVFFLDEDSWQVSATDMYDNRDELYRVAFAHGLNYYEVPAHWSTLEVFHDLQSRRY HHHEEEEEEECCCCEEEEECCCCCHHHHHHHHHHHCCCEEECCCCCHHHHHHHHHHHCEE LAIGLDNEGSMYDFDAKLSASDFTPDALRREGVR EEEEECCCCCEEEECCCCCCCCCCHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 10984043 [H]