| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is btuB [H]
Identifier: 119774640
GI number: 119774640
Start: 1822416
End: 1825115
Strand: Reverse
Name: btuB [H]
Synonym: Sama_1503
Alternate gene names: 119774640
Gene position: 1825115-1822416 (Counterclockwise)
Preceding gene: 119774641
Following gene: 119774638
Centisome position: 42.38
GC content: 53.81
Gene sequence:
>2700_bases ATGCTCGTTAACAACACTCTGGCCAAAGCGGTACGCTTTGCGCTGATCGGTGGTGCTGCTTCTGTAGCTATCACCAGCGC TGCCGCCTTTGCCGAAGAAGCCGATGGTGCAAAAGTAGAACGCATCGAGGTAACAGGTTCACGTATTAAGCGTACCGATC TGGAATCAGCAACGCCTGTTACCGTTCTCAGCTCTGAAGAAATGGCCAAGCAAGGTTTCACCACTATTCAGGACGCTCTG GAAAGCCTGACTTCTACCACAGGCGCCATGACCACTCAGTCTGTGCACGGCTTTACCCCAGCCGCTTCTTCCATCAGCCT GCGTGGCGCCGGTGCCAGCCGCACTCTGACGCTGATCAACGGTAAGCGTCTGAACCAGTATCCAAAGCCAGCCGGCGGTA CTGACAACTTTGTTGACACTGCCAACCTGCCAATGGAAGCCGTAGCCCGTATCGAAGTTCTGCAATCCGGTGCGTCTGCC GTATACGGTGCTGACGCCGTAGGTGGTGTGGTTAACATCATCCTGAAGGACGATTTCGAAGGCGTTGCCCTGAAATACCG TCACGGAGACACCACTGAAGGTGGCGGCGGTTCAGATCGTATCGCCCTGTCTCTGGGTGCCTCTTCTGACCGTGGTAACG TGTCTACCTTCATCGAATTCACCGATAACGAGCGTCTGAGAGCCTCTGACCGTGAAGTATTCGGTCTGCACACAGACAAA GTGCCTTACAGCGAATACTCTGCCTACAGCTCTTACGGTGCCCGTATCGCCGGTGGTCCTAAAGGCAACACCTTTGTCGG CAGCATCCCAATGGAGCGCTGTATTGCTGAAGGTTACCTGTGGGTAGCCGAGAAGAACCTCTGTGGTTTCGACCGTTCAC AATGGCGCGATCTGGCACCGGAAAGCAGCCGTTTCATCAGCTCAACCAACTTCACCTATGAGCTGTCTGACGACCTGTCT TTCGTTGGTCGTATGGATTATGCCAAGGCCCAATCCACTACCAATATCGAGCCTATGGGTATCGATAACTACACAGTGAC TGTAGCCGGTGACCAAGTCACTCTGGGTGTTGACCTGGATCCAAGCCTGACCAAGACCTTCAACAAGACCACTGGTCTGG GTGGCGACTTTGCTGCGGCTCCCGATGGCGAATACTACTATGTTCGTCGTCTGCACGAATTCAGTAACCGCAGCGGTGAA ACCAACACCCAAAACTTCTTCTTTACCGCTGGTCTGGAAGGTGTGATTGCAGACAGCTACAACTGGGATGCCTCTGTAAA CTACGGCCGCACTGAACTGGATATCTACAGCTCAGGCTACGCCACCGTAGGCGGCATGTTCAGCTACCTGTCACAGGGTG AGAACGGCGTTTCTGCCCTCAAACCTATGACTGCAGCTGAAGTAGCCAGCGTGGCTTACTCTCCATTCGAGCGCGCTCAG TCTACCCAGAAAAACGTACAGGCCAACATCTCCGGTACTGCGTTTGAACTGCCAGCCGGTGACGCTGACTTCGCTTTCGG TGCTGAATACACCAAGCAAGACTACGAAACTGACACAGATTCTGAGTCCAAGAAAGGTAACATCCTGAGCCGCGGCGGTT CATCAGGTGCCGGTGAGCGTTCTTACTGGGCTACTTACCTGGAAATGCGCATGCCAGTTCTGGAAGATCTGGTGGTAGAT GCCGCAGTACGTTATGACCGCTACTCCGACTTTGGCGGCAACCTGACTCCTCAGGTAGCCATTGAGTACCGTCCAATGGA CGAACTGCTGGTACGTGGTACCATCGGTAAGGTATTCCGCGCCCCTGACATGCACCGTGTATACGGTGATGCCACCAAGG GCTTCGCCACTGTAATCGACTTCAAGAAGTGTCAGGAACTGGGCGGTTCTCCAGGTAAGACACATCCTGATGCCACCATC AATACCGTGTGTAACGAACTGCACATCGACTCCACCACAGGTGCCAACAAGGACCTGAAGGCTGAAGAAGGCTACACTGC TAACATCGGCGCGGTATGGGGCGGTGAGAGCCTGAACGCCTCTATCGACGTGTGGGAATGGAAACTGGATGACATGGTGA GCGATATCAGCGCCAGCAAAGCTGCCCGCGAATACGAGACCTATGCCAGCATGATCACCCGTGACGAGACTGGTACCATC ACTCACATCAACGCCGTTGCCCAGAACCTGGCTTACCAGAAAGTTCGCGGTATCGACGTGACTGCCGGTTACGGTTGGGA TATCAACGAGTTCGGTGAACTGAAACTGAACTTCAACGGTTCTTACCTGCTGAAGTCTGAAGGCCAGACCGATCCTACCG CTGCTGTAGATGACGATCTGGACGATGGCGGCCTGCCACAGTACCGTGCCAACATGGTGCTGAGCTGGTTCATCGAAGAC TTCGAAACCACTTTGGGTGCCTACCACACTGCACGCATGCACGGTTCTTCTTACAAGTCATTCAAGTCTGACAGCCCAGA CTTCAACGAAAGCGATTATGAAGTGGCTTCTCAGACCAAGTGGAACCTGACTGCCGGTTATAACATCACCGACGGTATCA AGGTTAAGGCCGGTGTTGTGAACCTGTTCAACGTAGGTCCTAACTTCGACCCAACTGACACCTCTTGGCCACACTACCCA CGTTCCGTGTACAACGCACGTGGTCGTGAGTGGTTCGTAGAAGGCGAAGTGAAGTTCTAA
Upstream 100 bases:
>100_bases TATCTCCAGCCAGACGAATTTCGATCACGGATTTAATTAATTTGTATCGGGATATCGTCCTATAAAAAGCAAAACACATT TAAGTGTCAGGGAGATTATC
Downstream 100 bases:
>100_bases TGGACGCAGAGTCCTGAATAAAAACGGCACCCCAGGGTGCCGTTTTTTTATGTGCTGTTATGATCTAAATGCCTGACAGT GCGCTATTTAATGGCGTCTA
Product: outer membrane receptor protein
Products: NA
Alternate protein names: Cobalamin receptor; Outer membrane cobalamin translocator [H]
Number of amino acids: Translated: 899; Mature: 899
Protein sequence:
>899_residues MLVNNTLAKAVRFALIGGAASVAITSAAAFAEEADGAKVERIEVTGSRIKRTDLESATPVTVLSSEEMAKQGFTTIQDAL ESLTSTTGAMTTQSVHGFTPAASSISLRGAGASRTLTLINGKRLNQYPKPAGGTDNFVDTANLPMEAVARIEVLQSGASA VYGADAVGGVVNIILKDDFEGVALKYRHGDTTEGGGGSDRIALSLGASSDRGNVSTFIEFTDNERLRASDREVFGLHTDK VPYSEYSAYSSYGARIAGGPKGNTFVGSIPMERCIAEGYLWVAEKNLCGFDRSQWRDLAPESSRFISSTNFTYELSDDLS FVGRMDYAKAQSTTNIEPMGIDNYTVTVAGDQVTLGVDLDPSLTKTFNKTTGLGGDFAAAPDGEYYYVRRLHEFSNRSGE TNTQNFFFTAGLEGVIADSYNWDASVNYGRTELDIYSSGYATVGGMFSYLSQGENGVSALKPMTAAEVASVAYSPFERAQ STQKNVQANISGTAFELPAGDADFAFGAEYTKQDYETDTDSESKKGNILSRGGSSGAGERSYWATYLEMRMPVLEDLVVD AAVRYDRYSDFGGNLTPQVAIEYRPMDELLVRGTIGKVFRAPDMHRVYGDATKGFATVIDFKKCQELGGSPGKTHPDATI NTVCNELHIDSTTGANKDLKAEEGYTANIGAVWGGESLNASIDVWEWKLDDMVSDISASKAAREYETYASMITRDETGTI THINAVAQNLAYQKVRGIDVTAGYGWDINEFGELKLNFNGSYLLKSEGQTDPTAAVDDDLDDGGLPQYRANMVLSWFIED FETTLGAYHTARMHGSSYKSFKSDSPDFNESDYEVASQTKWNLTAGYNITDGIKVKAGVVNLFNVGPNFDPTDTSWPHYP RSVYNARGREWFVEGEVKF
Sequences:
>Translated_899_residues MLVNNTLAKAVRFALIGGAASVAITSAAAFAEEADGAKVERIEVTGSRIKRTDLESATPVTVLSSEEMAKQGFTTIQDAL ESLTSTTGAMTTQSVHGFTPAASSISLRGAGASRTLTLINGKRLNQYPKPAGGTDNFVDTANLPMEAVARIEVLQSGASA VYGADAVGGVVNIILKDDFEGVALKYRHGDTTEGGGGSDRIALSLGASSDRGNVSTFIEFTDNERLRASDREVFGLHTDK VPYSEYSAYSSYGARIAGGPKGNTFVGSIPMERCIAEGYLWVAEKNLCGFDRSQWRDLAPESSRFISSTNFTYELSDDLS FVGRMDYAKAQSTTNIEPMGIDNYTVTVAGDQVTLGVDLDPSLTKTFNKTTGLGGDFAAAPDGEYYYVRRLHEFSNRSGE TNTQNFFFTAGLEGVIADSYNWDASVNYGRTELDIYSSGYATVGGMFSYLSQGENGVSALKPMTAAEVASVAYSPFERAQ STQKNVQANISGTAFELPAGDADFAFGAEYTKQDYETDTDSESKKGNILSRGGSSGAGERSYWATYLEMRMPVLEDLVVD AAVRYDRYSDFGGNLTPQVAIEYRPMDELLVRGTIGKVFRAPDMHRVYGDATKGFATVIDFKKCQELGGSPGKTHPDATI NTVCNELHIDSTTGANKDLKAEEGYTANIGAVWGGESLNASIDVWEWKLDDMVSDISASKAAREYETYASMITRDETGTI THINAVAQNLAYQKVRGIDVTAGYGWDINEFGELKLNFNGSYLLKSEGQTDPTAAVDDDLDDGGLPQYRANMVLSWFIED FETTLGAYHTARMHGSSYKSFKSDSPDFNESDYEVASQTKWNLTAGYNITDGIKVKAGVVNLFNVGPNFDPTDTSWPHYP RSVYNARGREWFVEGEVKF >Mature_899_residues MLVNNTLAKAVRFALIGGAASVAITSAAAFAEEADGAKVERIEVTGSRIKRTDLESATPVTVLSSEEMAKQGFTTIQDAL ESLTSTTGAMTTQSVHGFTPAASSISLRGAGASRTLTLINGKRLNQYPKPAGGTDNFVDTANLPMEAVARIEVLQSGASA VYGADAVGGVVNIILKDDFEGVALKYRHGDTTEGGGGSDRIALSLGASSDRGNVSTFIEFTDNERLRASDREVFGLHTDK VPYSEYSAYSSYGARIAGGPKGNTFVGSIPMERCIAEGYLWVAEKNLCGFDRSQWRDLAPESSRFISSTNFTYELSDDLS FVGRMDYAKAQSTTNIEPMGIDNYTVTVAGDQVTLGVDLDPSLTKTFNKTTGLGGDFAAAPDGEYYYVRRLHEFSNRSGE TNTQNFFFTAGLEGVIADSYNWDASVNYGRTELDIYSSGYATVGGMFSYLSQGENGVSALKPMTAAEVASVAYSPFERAQ STQKNVQANISGTAFELPAGDADFAFGAEYTKQDYETDTDSESKKGNILSRGGSSGAGERSYWATYLEMRMPVLEDLVVD AAVRYDRYSDFGGNLTPQVAIEYRPMDELLVRGTIGKVFRAPDMHRVYGDATKGFATVIDFKKCQELGGSPGKTHPDATI NTVCNELHIDSTTGANKDLKAEEGYTANIGAVWGGESLNASIDVWEWKLDDMVSDISASKAAREYETYASMITRDETGTI THINAVAQNLAYQKVRGIDVTAGYGWDINEFGELKLNFNGSYLLKSEGQTDPTAAVDDDLDDGGLPQYRANMVLSWFIED FETTLGAYHTARMHGSSYKSFKSDSPDFNESDYEVASQTKWNLTAGYNITDGIKVKAGVVNLFNVGPNFDPTDTSWPHYP RSVYNARGREWFVEGEVKF
Specific function: Involved in the active translocation of vitamin B12 (cyanocobalamin) across the outer membrane to the periplasmic space. It derives its energy for transport by interacting with the trans-periplasmic membrane protein TonB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the TonB-dependent receptor family. BtuB (TC 1.B.14.3.1) subfamily [H]
Homologues:
Organism=Escherichia coli, GI1790405, Length=170, Percent_Identity=32.9411764705882, Blast_Score=84, Evalue=5e-17, Organism=Escherichia coli, GI1788478, Length=164, Percent_Identity=28.6585365853659, Blast_Score=74, Evalue=4e-14,
Paralogues:
None
Copy number: 100 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010101 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 97406; Mature: 97406
Theoretical pI: Translated: 4.45; Mature: 4.45
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLVNNTLAKAVRFALIGGAASVAITSAAAFAEEADGAKVERIEVTGSRIKRTDLESATPV CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCCCCCCCE TVLSSEEMAKQGFTTIQDALESLTSTTGAMTTQSVHGFTPAASSISLRGAGASRTLTLIN EEECCHHHHHHCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEECCCCCEEEEEEE GKRLNQYPKPAGGTDNFVDTANLPMEAVARIEVLQSGASAVYGADAVGGVVNIILKDDFE CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCHHHCCEEEEEEECCCC GVALKYRHGDTTEGGGGSDRIALSLGASSDRGNVSTFIEFTDNERLRASDREVFGLHTDK CEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCC VPYSEYSAYSSYGARIAGGPKGNTFVGSIPMERCIAEGYLWVAEKNLCGFDRSQWRDLAP CCCHHHHHHHHCCCEEECCCCCCEEEECCCHHHHHHCCEEEEEECCCCCCCHHHHHHCCC ESSRFISSTNFTYELSDDLSFVGRMDYAKAQSTTNIEPMGIDNYTVTVAGDQVTLGVDLD CCHHEEECCCEEEEECCCHHHHHCCHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEECCC PSLTKTFNKTTGLGGDFAAAPDGEYYYVRRLHEFSNRSGETNTQNFFFTAGLEGVIADSY CHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEECCC NWDASVNYGRTELDIYSSGYATVGGMFSYLSQGENGVSALKPMTAAEVASVAYSPFERAQ CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHCHHHHHH STQKNVQANISGTAFELPAGDADFAFGAEYTKQDYETDTDSESKKGNILSRGGSSGAGER HHHHHEEEECCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCH SYWATYLEMRMPVLEDLVVDAAVRYDRYSDFGGNLTPQVAIEYRPMDELLVRGTIGKVFR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHCCHHHHHC APDMHRVYGDATKGFATVIDFKKCQELGGSPGKTHPDATINTVCNELHIDSTTGANKDLK CCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCCCC AEEGYTANIGAVWGGESLNASIDVWEWKLDDMVSDISASKAAREYETYASMITRDETGTI CCCCCEEEEEEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE THINAVAQNLAYQKVRGIDVTAGYGWDINEFGELKLNFNGSYLLKSEGQTDPTAAVDDDL EEHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCCC DDGGLPQYRANMVLSWFIEDFETTLGAYHTARMHGSSYKSFKSDSPDFNESDYEVASQTK CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCHHHCCCE WNLTAGYNITDGIKVKAGVVNLFNVGPNFDPTDTSWPHYPRSVYNARGREWFVEGEVKF EEEEECCCCCCCCEEEECEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCC >Mature Secondary Structure MLVNNTLAKAVRFALIGGAASVAITSAAAFAEEADGAKVERIEVTGSRIKRTDLESATPV CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHCCCCCCCCE TVLSSEEMAKQGFTTIQDALESLTSTTGAMTTQSVHGFTPAASSISLRGAGASRTLTLIN EEECCHHHHHHCHHHHHHHHHHHHHHCCCCEECCCCCCCCCCCCEEEECCCCCEEEEEEE GKRLNQYPKPAGGTDNFVDTANLPMEAVARIEVLQSGASAVYGADAVGGVVNIILKDDFE CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEECCHHHCCEEEEEEECCCC GVALKYRHGDTTEGGGGSDRIALSLGASSDRGNVSTFIEFTDNERLRASDREVFGLHTDK CEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCEEEEEECCC VPYSEYSAYSSYGARIAGGPKGNTFVGSIPMERCIAEGYLWVAEKNLCGFDRSQWRDLAP CCCHHHHHHHHCCCEEECCCCCCEEEECCCHHHHHHCCEEEEEECCCCCCCHHHHHHCCC ESSRFISSTNFTYELSDDLSFVGRMDYAKAQSTTNIEPMGIDNYTVTVAGDQVTLGVDLD CCHHEEECCCEEEEECCCHHHHHCCHHHHCCCCCCCCCCCCCCEEEEEECCEEEEEECCC PSLTKTFNKTTGLGGDFAAAPDGEYYYVRRLHEFSNRSGETNTQNFFFTAGLEGVIADSY CHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCEEEECCC NWDASVNYGRTELDIYSSGYATVGGMFSYLSQGENGVSALKPMTAAEVASVAYSPFERAQ CCCCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHCHHHHHH STQKNVQANISGTAFELPAGDADFAFGAEYTKQDYETDTDSESKKGNILSRGGSSGAGER HHHHHEEEECCCEEEECCCCCCCCCCCCHHHHCCCCCCCCCCCCCCCEEECCCCCCCCCH SYWATYLEMRMPVLEDLVVDAAVRYDRYSDFGGNLTPQVAIEYRPMDELLVRGTIGKVFR HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCHHHHHHHCCHHHHHC APDMHRVYGDATKGFATVIDFKKCQELGGSPGKTHPDATINTVCNELHIDSTTGANKDLK CCCHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHEECCCCCCCCCCCC AEEGYTANIGAVWGGESLNASIDVWEWKLDDMVSDISASKAAREYETYASMITRDETGTI CCCCCEEEEEEEECCCCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCE THINAVAQNLAYQKVRGIDVTAGYGWDINEFGELKLNFNGSYLLKSEGQTDPTAAVDDDL EEHHHHHHHHHHHHHCCEEEECCCCCCCCCCCCEEEEECCCEEECCCCCCCCCCCCCCCC DDGGLPQYRANMVLSWFIEDFETTLGAYHTARMHGSSYKSFKSDSPDFNESDYEVASQTK CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCCCHHHCCCE WNLTAGYNITDGIKVKAGVVNLFNVGPNFDPTDTSWPHYPRSVYNARGREWFVEGEVKF EEEEECCCCCCCCEEEECEEEEEECCCCCCCCCCCCCCCCHHHHCCCCCEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA