| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774641
Identifier: 119774641
GI number: 119774641
Start: 1825652
End: 1826662
Strand: Reverse
Name: 119774641
Synonym: Sama_1504
Alternate gene names: NA
Gene position: 1826662-1825652 (Counterclockwise)
Preceding gene: 119774642
Following gene: 119774640
Centisome position: 42.42
GC content: 56.28
Gene sequence:
>1011_bases ATGAACCGGCAATCCATCGAAACCAACTCAACACAGGGTGTCTTTGAGTCGGGGCTGCATAAACGCCTCCATGCAGGCGC CGCCAAATTGCCCAGTCCACTGGGAGGTCTGGCGCTGGCCATTGCCAGTCTGGGCTGGACGCTGGAGAATATCCTTCCCT CAGCAAACGGCATGGCCCAGCTTGCGGGCAGCCTGGTGGGTTCCTTATTACTGATGGCCCTGACTATCAAGTTTATCCTC CACCCCAAAATCCTGGCCGAGGAGCTGGCCCATCCGGTATTGGGCAGTGTCATTCCCACCTATGCCATGGGATGGATGGT GGTGTCCCGCTGTCTTGGCAATTATGTTGCGGGTGCGGGCGAGATTCTGTGGTTGTTGGCCGTGGCCGCACACCTGGGAT TTCTGGCTGCCTTTTGTATTCATCGCTGCCGTAACTTTTCTCTGGACAGCATGGTACCCAGCTGGTTTGTGCCCCCCATT GGCATCATAGTGGCGGCAGTAGCCTTTCCGCCCCATGGACCCAGAGTGCTGGCAGAAGCTCTGCTGTGGTTTGGCATGCT GGCCTACCTTGTCATGCTGCCAGTGATGCTTTACCGGCTTATCTTTCGCGCTGCAGTGCCCGAAGCAGCACAGCCAACCC TGGCCATTCTCGCCGCCCCGGCAAGCCTGTCTCTGGCCGGTTACCTGAGTCTTATCCCTGAACCTTCGGCGGTGATAATA GGGTTATTGCTGACCCTGGCAGTGCTGATGACCAGTATCATCTATCTTGCCTTCTTCCATTTGCTGCGGTTGCCCTTCAG CCCGGGATTCGCGGCCTTTACCTTCCCCATGGTCATTGGCGCCACAGCCCTGTACAAAACACACGATTGGCTCGCTGACC ACGGCCATGTCGGCCAGTTGACTCTTGGGCTGTCACACCTGGCAAATCTTGAGCTGACTGTTGCGGCGGCAGTGGTGCTT TTTGTGAGCGCAAAATATCTGGCTTTCTATCTCAAGAAACACAAAAGTTAA
Upstream 100 bases:
>100_bases TTACCGTATGATTAACAACATTCAAATATTATTACCATTACTCCCACCATAAACTGTTTTCACCGAGATACAGGAACTGA CTGTTTATGAGGAGTGCGAT
Downstream 100 bases:
>100_bases TATTTGAGCAGATTAATTCAATCAAATTTATTAACAACTGACCAAATGATATTTGTTAACAAATAAGGAATATTTCAAAT ATTCCGTGGTAGCGCCGACA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 336; Mature: 336
Protein sequence:
>336_residues MNRQSIETNSTQGVFESGLHKRLHAGAAKLPSPLGGLALAIASLGWTLENILPSANGMAQLAGSLVGSLLLMALTIKFIL HPKILAEELAHPVLGSVIPTYAMGWMVVSRCLGNYVAGAGEILWLLAVAAHLGFLAAFCIHRCRNFSLDSMVPSWFVPPI GIIVAAVAFPPHGPRVLAEALLWFGMLAYLVMLPVMLYRLIFRAAVPEAAQPTLAILAAPASLSLAGYLSLIPEPSAVII GLLLTLAVLMTSIIYLAFFHLLRLPFSPGFAAFTFPMVIGATALYKTHDWLADHGHVGQLTLGLSHLANLELTVAAAVVL FVSAKYLAFYLKKHKS
Sequences:
>Translated_336_residues MNRQSIETNSTQGVFESGLHKRLHAGAAKLPSPLGGLALAIASLGWTLENILPSANGMAQLAGSLVGSLLLMALTIKFIL HPKILAEELAHPVLGSVIPTYAMGWMVVSRCLGNYVAGAGEILWLLAVAAHLGFLAAFCIHRCRNFSLDSMVPSWFVPPI GIIVAAVAFPPHGPRVLAEALLWFGMLAYLVMLPVMLYRLIFRAAVPEAAQPTLAILAAPASLSLAGYLSLIPEPSAVII GLLLTLAVLMTSIIYLAFFHLLRLPFSPGFAAFTFPMVIGATALYKTHDWLADHGHVGQLTLGLSHLANLELTVAAAVVL FVSAKYLAFYLKKHKS >Mature_336_residues MNRQSIETNSTQGVFESGLHKRLHAGAAKLPSPLGGLALAIASLGWTLENILPSANGMAQLAGSLVGSLLLMALTIKFIL HPKILAEELAHPVLGSVIPTYAMGWMVVSRCLGNYVAGAGEILWLLAVAAHLGFLAAFCIHRCRNFSLDSMVPSWFVPPI GIIVAAVAFPPHGPRVLAEALLWFGMLAYLVMLPVMLYRLIFRAAVPEAAQPTLAILAAPASLSLAGYLSLIPEPSAVII GLLLTLAVLMTSIIYLAFFHLLRLPFSPGFAAFTFPMVIGATALYKTHDWLADHGHVGQLTLGLSHLANLELTVAAAVVL FVSAKYLAFYLKKHKS
Specific function: Unknown
COG id: COG1275
COG function: function code P; Tellurite resistance protein and related permeases
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tellurite-resistance/dicarboxylate transporter (TDT) family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004695 - InterPro: IPR011552 [H]
Pfam domain/function: PF03595 C4dic_mal_tran [H]
EC number: NA
Molecular weight: Translated: 35887; Mature: 35887
Theoretical pI: Translated: 9.32; Mature: 9.32
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 3.3 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNRQSIETNSTQGVFESGLHKRLHAGAAKLPSPLGGLALAIASLGWTLENILPSANGMAQ CCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH LAGSLVGSLLLMALTIKFILHPKILAEELAHPVLGSVIPTYAMGWMVVSRCLGNYVAGAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH EILWLLAVAAHLGFLAAFCIHRCRNFSLDSMVPSWFVPPIGIIVAAVAFPPHGPRVLAEA HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHH LLWFGMLAYLVMLPVMLYRLIFRAAVPEAAQPTLAILAAPASLSLAGYLSLIPEPSAVII HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCHHHHHHHHHHHCCCCHHHHH GLLLTLAVLMTSIIYLAFFHLLRLPFSPGFAAFTFPMVIGATALYKTHDWLADHGHVGQL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH TLGLSHLANLELTVAAAVVLFVSAKYLAFYLKKHKS HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MNRQSIETNSTQGVFESGLHKRLHAGAAKLPSPLGGLALAIASLGWTLENILPSANGMAQ CCCCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHH LAGSLVGSLLLMALTIKFILHPKILAEELAHPVLGSVIPTYAMGWMVVSRCLGNYVAGAG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHH EILWLLAVAAHLGFLAAFCIHRCRNFSLDSMVPSWFVPPIGIIVAAVAFPPHGPRVLAEA HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHH LLWFGMLAYLVMLPVMLYRLIFRAAVPEAAQPTLAILAAPASLSLAGYLSLIPEPSAVII HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHEEECCHHHHHHHHHHHCCCCHHHHH GLLLTLAVLMTSIIYLAFFHLLRLPFSPGFAAFTFPMVIGATALYKTHDWLADHGHVGQL HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH TLGLSHLANLELTVAAAVVLFVSAKYLAFYLKKHKS HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]