| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774596
Identifier: 119774596
GI number: 119774596
Start: 1768677
End: 1769288
Strand: Reverse
Name: 119774596
Synonym: Sama_1459
Alternate gene names: NA
Gene position: 1769288-1768677 (Counterclockwise)
Preceding gene: 119774599
Following gene: 119774595
Centisome position: 41.09
GC content: 57.19
Gene sequence:
>612_bases ATGCAGAATATTTCTCAGGGACGACGGCCCTACTATGTCACTGCGGCGATGGTCGCCGCAGAGCTTAACCACACGCTCGC CAGTTGCAAGGAAATCAATCTCACCGCCAGTAATGCCCAGGCGGCCTCAAGCCGAATCGGCAGCGCCGCGCTTGGATTCA AGGCACTAACCCACTATATCGATGAGCTCGCCGGTTACACCAAGCGCGCTGCCAACGAAATCAATCAACTGGCAAAGGAA GCCAGCAAGCTGGCAACCCGCACAGCACGCACCGCCACGGCGCTGCACTATTTTCATGCAGCCCGGGACAAGGCCAGCAC CGCCGCCTACGCCTACAGCATGGCGGGCGCTATCGAAACCACAGAAGAGCATTACGCCAAATTGGAGAGTGATTTCAATC AGGTGCTCAGTAAGATGCAGGTACAGTTGTTGGATTTAAAACAAAACCTTCGCAGCGCCAACGCCCTCGCCTCCATCTGC CGGGTCGAGGCTTGCCGGGTCGACGGACGATTTCAGACCATCTTCGTGGACGTGGCCAACAAGGTCGATACGGTTGCCGC TCAGATCCGCGAGCGGGTAGATACTGCCATCCGCCTGTTCGATTCCCATTGA
Upstream 100 bases:
>100_bases TCCAAAGCAGCTCCTAAAGCAAAGCCGCTGAATATTTCTTCGCGGCGCAAATTTATTAACCCTGACTATACTTTAGCTGT CATCGGGAAGGAAATTCATC
Downstream 100 bases:
>100_bases CGTTAAGGATTAACCAATGAAGACACAATTACTGGTCGAGACCCCCACTCACAAATGGCTGTATTTCGGCAGAGACCCTG AGAAAAACGACAAAATCATC
Product: methyl-accepting chemotaxis protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 203; Mature: 203
Protein sequence:
>203_residues MQNISQGRRPYYVTAAMVAAELNHTLASCKEINLTASNAQAASSRIGSAALGFKALTHYIDELAGYTKRAANEINQLAKE ASKLATRTARTATALHYFHAARDKASTAAYAYSMAGAIETTEEHYAKLESDFNQVLSKMQVQLLDLKQNLRSANALASIC RVEACRVDGRFQTIFVDVANKVDTVAAQIRERVDTAIRLFDSH
Sequences:
>Translated_203_residues MQNISQGRRPYYVTAAMVAAELNHTLASCKEINLTASNAQAASSRIGSAALGFKALTHYIDELAGYTKRAANEINQLAKE ASKLATRTARTATALHYFHAARDKASTAAYAYSMAGAIETTEEHYAKLESDFNQVLSKMQVQLLDLKQNLRSANALASIC RVEACRVDGRFQTIFVDVANKVDTVAAQIRERVDTAIRLFDSH >Mature_203_residues MQNISQGRRPYYVTAAMVAAELNHTLASCKEINLTASNAQAASSRIGSAALGFKALTHYIDELAGYTKRAANEINQLAKE ASKLATRTARTATALHYFHAARDKASTAAYAYSMAGAIETTEEHYAKLESDFNQVLSKMQVQLLDLKQNLRSANALASIC RVEACRVDGRFQTIFVDVANKVDTVAAQIRERVDTAIRLFDSH
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 22232; Mature: 22232
Theoretical pI: Translated: 9.08; Mature: 9.08
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MQNISQGRRPYYVTAAMVAAELNHTLASCKEINLTASNAQAASSRIGSAALGFKALTHYI CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH DELAGYTKRAANEINQLAKEASKLATRTARTATALHYFHAARDKASTAAYAYSMAGAIET HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TEEHYAKLESDFNQVLSKMQVQLLDLKQNLRSANALASICRVEACRVDGRFQTIFVDVAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH KVDTVAAQIRERVDTAIRLFDSH HHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MQNISQGRRPYYVTAAMVAAELNHTLASCKEINLTASNAQAASSRIGSAALGFKALTHYI CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHH DELAGYTKRAANEINQLAKEASKLATRTARTATALHYFHAARDKASTAAYAYSMAGAIET HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TEEHYAKLESDFNQVLSKMQVQLLDLKQNLRSANALASICRVEACRVDGRFQTIFVDVAN HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH KVDTVAAQIRERVDTAIRLFDSH HHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA