| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774491
Identifier: 119774491
GI number: 119774491
Start: 1642945
End: 1643427
Strand: Reverse
Name: 119774491
Synonym: Sama_1354
Alternate gene names: NA
Gene position: 1643427-1642945 (Counterclockwise)
Preceding gene: 119774493
Following gene: 119774490
Centisome position: 38.16
GC content: 40.37
Gene sequence:
>483_bases ATGAAAGCTAGTGATTTAATAAAAAAGCTCGAAGCTGATCCCGATTATCAGGAGATGCAAAAGCGTAGAGCTCTGGAGTT AAAAGAGAGAGAAGCTGTTCTGGCAGAGGATGAGCGAAGCTTATTAGAAGAACTGTCATTAATTGGTTATGCAATTGAAT CAGTATGGGACTTCGTCAACAATAATAATCGCCATGAGTTTTTACGTAAGTTTAATGGCAGCTATGCTGGAGCCTATCCA ACTTTGGTAAAGCACCTAACTATTGAGCATCACCCAAGAATTAGAGAGGGTATAATTCGTGCTCTCACGGAAAAAGATGC TAATGAGGTTGCGTCCGAGTCTTTATTGTCTGAGTTTTATAAAGAGCAAGACTTGAATTTAAAGTGGGTGCTTGCAAATG CTTTACGCACAGTTTTAACTCTCTCCCAAAAAGCCAAGCACCCTGAATACAAGGAGGTTTACAATGGCAAAGGTCAGCCC TAA
Upstream 100 bases:
>100_bases TAGTTAATTCTATTGAACATAAACCGGCACGCTTTTCACTGGTCTGAGGTGATAAACGAGCCGTCTCACTATACAAAGTT AGGGCTCTTGGTACTTATGA
Downstream 100 bases:
>100_bases CAAGCACATGTTGTCGGACTGGTTTTCCGCTGCGCTCCAAACCAGCCGCAAATGCGGGCGTTAAGAGGCAAGAGATAGTA AGTGCAACAGTCACAGATTA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 160; Mature: 160
Protein sequence:
>160_residues MKASDLIKKLEADPDYQEMQKRRALELKEREAVLAEDERSLLEELSLIGYAIESVWDFVNNNNRHEFLRKFNGSYAGAYP TLVKHLTIEHHPRIREGIIRALTEKDANEVASESLLSEFYKEQDLNLKWVLANALRTVLTLSQKAKHPEYKEVYNGKGQP
Sequences:
>Translated_160_residues MKASDLIKKLEADPDYQEMQKRRALELKEREAVLAEDERSLLEELSLIGYAIESVWDFVNNNNRHEFLRKFNGSYAGAYP TLVKHLTIEHHPRIREGIIRALTEKDANEVASESLLSEFYKEQDLNLKWVLANALRTVLTLSQKAKHPEYKEVYNGKGQP >Mature_160_residues MKASDLIKKLEADPDYQEMQKRRALELKEREAVLAEDERSLLEELSLIGYAIESVWDFVNNNNRHEFLRKFNGSYAGAYP TLVKHLTIEHHPRIREGIIRALTEKDANEVASESLLSEFYKEQDLNLKWVLANALRTVLTLSQKAKHPEYKEVYNGKGQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18555; Mature: 18555
Theoretical pI: Translated: 6.37; Mature: 6.37
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKASDLIKKLEADPDYQEMQKRRALELKEREAVLAEDERSLLEELSLIGYAIESVWDFVN CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NNNRHEFLRKFNGSYAGAYPTLVKHLTIEHHPRIREGIIRALTEKDANEVASESLLSEFY CCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KEQDLNLKWVLANALRTVLTLSQKAKHPEYKEVYNGKGQP HHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC >Mature Secondary Structure MKASDLIKKLEADPDYQEMQKRRALELKEREAVLAEDERSLLEELSLIGYAIESVWDFVN CCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC NNNRHEFLRKFNGSYAGAYPTLVKHLTIEHHPRIREGIIRALTEKDANEVASESLLSEFY CCCHHHHHHHHCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH KEQDLNLKWVLANALRTVLTLSQKAKHPEYKEVYNGKGQP HHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA