| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is gltT [H]
Identifier: 119774456
GI number: 119774456
Start: 1603255
End: 1604568
Strand: Reverse
Name: gltT [H]
Synonym: Sama_1319
Alternate gene names: 119774456
Gene position: 1604568-1603255 (Counterclockwise)
Preceding gene: 119774458
Following gene: 119774440
Centisome position: 37.26
GC content: 51.98
Gene sequence:
>1314_bases ATGGCTGCTGCACAATCCAGTAAAATTGGCCTGACAGGCAAGATCTTAATCGGCATGGGCGCCGGTATTTTGATAGGTTT GCTCCTTCGTAACTTTTTCGGCGGCAGTGAATGGGTTCAGGACTACATCACCGAGGGTTTTTTCCATGTGATAGGCACTA TATTTATCAACAGTCTCAAGATGTTGGTTGTGCCTCTTGTCTTTATTTCACTGGTCTGTGGAACCTGTTCTCTGAGTGAA CCTTCCAAGTTAGGCCGACTGGGCGGTAAAACCCTCGCGTTTTATCTGTTTACCACCGCTATCGCACTGGTCGTGGCAAT CTCTGCTGCGGTACTTGTCCAGCCCGGCAATGCCTCTCTGGCATCTGAAAGCATGCAGTATTCGGCCAAGGAAGCCCCCA GTCTGGCGGATGTGCTGATCAACATAGTGCCATCCAACCCAATGAAGGCGCTGAGCGAAGGAAATATGCTGCAAATAATT ATTTTTGCAGTAATTTTCGGTTTTGCCATATCACACATTGGTGAGCGCGGACGCCGTGTGGCGGCCCTGTTTGATGACCT CAACGAAGTCATCATGCGCGTGGTAACCCTCATTATGCAGCTGGCTCCCTACGGTGTGTTTGCCCTGATGGGGAAACTCG CACTGACCTTGGGTATGGAAACCCTTGAGAGCGTGATTAAGTACTTTATGCTGGTGTTGGTGGTGCTGCTGTTCCACGGA TTTGTGGTGTATCCAACCCTGCTTAAATTGTTCTCCGGCCTGAGTCCACTGATGTTCATCCGTAAGATGCGTGATGTGCA GCTGTTTGCCTTTAGTACGGCCAGCTCTAACGCAACCCTGCCTGTCACCATGGAAGCATCTGAGCACCGTCTGGGCGCCG ATAACAAAGTTGCCTCTTTCACCCTGCCACTGGGCGCCACCATCAACATGGATGGCACTGCTATTATGCAGGGCGTAGCG ACTGTGTTTATTGCTCAGGTATTTGGTATCGACCTGACCATCACCGACTATGCCATGGTCGTGATGACAGCCACACTGGC TTCCATCGGTACTGCGGGCGTGCCTGGCGTTGGCCTGGTGATGCTGGCCATGGTGCTCAATCAGGTTGGCTTGCCGGTAG AAGGCATTGCGCTCATTTTGGGTGTGGATCGTATGCTCGATATGGTTCGCACTGCGGTAAACGTCACGGGTGATACAGTC GCCACTGTGGTGATTGCCAAGTCTGAAGGCGCCCTCAACGAAGCCGTCTTTAATGACCCCAAGGCAGGTAAAACCGCAGG CAGTTTTGATGCTGAGGTTCACCGCGGCGAATAA
Upstream 100 bases:
>100_bases CCAGAAAACTTTAGTTAATTGCCCGTTTCCTCGGCACCGCTTTCTTGCTAGGCTTTTGTGCGCCAAAACACAAAAGCACA AAAAATAAACAGGAAAATCT
Downstream 100 bases:
>100_bases GCGCATTTTGAGAAAATGTGTCGGGTGAGTAATTCGCCCCTTTGCTTTTTAGTTAAAACCCCTGTTCCCCGCTAAACCCA AAATGTAAAAATCCACCTGC
Product: sodium:dicarboxylate symporter
Products: L-aspartate [Cytoplasm]; Proton [Cytoplasm]; L-glutamate [Cytoplasm] [C]
Alternate protein names: Glutamate-aspartate carrier protein [H]
Number of amino acids: Translated: 437; Mature: 436
Protein sequence:
>437_residues MAAAQSSKIGLTGKILIGMGAGILIGLLLRNFFGGSEWVQDYITEGFFHVIGTIFINSLKMLVVPLVFISLVCGTCSLSE PSKLGRLGGKTLAFYLFTTAIALVVAISAAVLVQPGNASLASESMQYSAKEAPSLADVLINIVPSNPMKALSEGNMLQII IFAVIFGFAISHIGERGRRVAALFDDLNEVIMRVVTLIMQLAPYGVFALMGKLALTLGMETLESVIKYFMLVLVVLLFHG FVVYPTLLKLFSGLSPLMFIRKMRDVQLFAFSTASSNATLPVTMEASEHRLGADNKVASFTLPLGATINMDGTAIMQGVA TVFIAQVFGIDLTITDYAMVVMTATLASIGTAGVPGVGLVMLAMVLNQVGLPVEGIALILGVDRMLDMVRTAVNVTGDTV ATVVIAKSEGALNEAVFNDPKAGKTAGSFDAEVHRGE
Sequences:
>Translated_437_residues MAAAQSSKIGLTGKILIGMGAGILIGLLLRNFFGGSEWVQDYITEGFFHVIGTIFINSLKMLVVPLVFISLVCGTCSLSE PSKLGRLGGKTLAFYLFTTAIALVVAISAAVLVQPGNASLASESMQYSAKEAPSLADVLINIVPSNPMKALSEGNMLQII IFAVIFGFAISHIGERGRRVAALFDDLNEVIMRVVTLIMQLAPYGVFALMGKLALTLGMETLESVIKYFMLVLVVLLFHG FVVYPTLLKLFSGLSPLMFIRKMRDVQLFAFSTASSNATLPVTMEASEHRLGADNKVASFTLPLGATINMDGTAIMQGVA TVFIAQVFGIDLTITDYAMVVMTATLASIGTAGVPGVGLVMLAMVLNQVGLPVEGIALILGVDRMLDMVRTAVNVTGDTV ATVVIAKSEGALNEAVFNDPKAGKTAGSFDAEVHRGE >Mature_436_residues AAAQSSKIGLTGKILIGMGAGILIGLLLRNFFGGSEWVQDYITEGFFHVIGTIFINSLKMLVVPLVFISLVCGTCSLSEP SKLGRLGGKTLAFYLFTTAIALVVAISAAVLVQPGNASLASESMQYSAKEAPSLADVLINIVPSNPMKALSEGNMLQIII FAVIFGFAISHIGERGRRVAALFDDLNEVIMRVVTLIMQLAPYGVFALMGKLALTLGMETLESVIKYFMLVLVVLLFHGF VVYPTLLKLFSGLSPLMFIRKMRDVQLFAFSTASSNATLPVTMEASEHRLGADNKVASFTLPLGATINMDGTAIMQGVAT VFIAQVFGIDLTITDYAMVVMTATLASIGTAGVPGVGLVMLAMVLNQVGLPVEGIALILGVDRMLDMVRTAVNVTGDTVA TVVIAKSEGALNEAVFNDPKAGKTAGSFDAEVHRGE
Specific function: This carrier protein is part of the Na(+)-dependent, binding-protein-independent glutamate-aspartate transport system [H]
COG id: COG1301
COG function: function code C; Na+/H+-dicarboxylate symporters
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family [H]
Homologues:
Organism=Homo sapiens, GI169790839, Length=438, Percent_Identity=33.3333333333333, Blast_Score=205, Evalue=8e-53, Organism=Homo sapiens, GI194239697, Length=457, Percent_Identity=31.5098468271335, Blast_Score=193, Evalue=3e-49, Organism=Homo sapiens, GI4827012, Length=283, Percent_Identity=40.2826855123675, Blast_Score=192, Evalue=7e-49, Organism=Homo sapiens, GI21314632, Length=390, Percent_Identity=32.8205128205128, Blast_Score=190, Evalue=2e-48, Organism=Homo sapiens, GI40254478, Length=450, Percent_Identity=31.3333333333333, Blast_Score=189, Evalue=4e-48, Organism=Homo sapiens, GI66773030, Length=440, Percent_Identity=31.1363636363636, Blast_Score=186, Evalue=5e-47, Organism=Homo sapiens, GI5032093, Length=376, Percent_Identity=36.436170212766, Blast_Score=184, Evalue=1e-46, Organism=Homo sapiens, GI223468564, Length=246, Percent_Identity=38.2113821138211, Blast_Score=162, Evalue=6e-40, Organism=Homo sapiens, GI223468566, Length=255, Percent_Identity=38.0392156862745, Blast_Score=162, Evalue=7e-40, Organism=Homo sapiens, GI262359914, Length=380, Percent_Identity=31.0526315789474, Blast_Score=148, Evalue=1e-35, Organism=Homo sapiens, GI301601644, Length=170, Percent_Identity=40, Blast_Score=114, Evalue=1e-25, Organism=Escherichia coli, GI1790514, Length=441, Percent_Identity=35.6009070294785, Blast_Score=248, Evalue=5e-67, Organism=Escherichia coli, GI1789947, Length=397, Percent_Identity=31.7380352644836, Blast_Score=195, Evalue=5e-51, Organism=Escherichia coli, GI1788024, Length=449, Percent_Identity=32.293986636971, Blast_Score=165, Evalue=7e-42, Organism=Escherichia coli, GI1789473, Length=386, Percent_Identity=28.7564766839378, Blast_Score=117, Evalue=1e-27, Organism=Caenorhabditis elegans, GI71983106, Length=411, Percent_Identity=33.5766423357664, Blast_Score=219, Evalue=2e-57, Organism=Caenorhabditis elegans, GI71983099, Length=411, Percent_Identity=33.5766423357664, Blast_Score=219, Evalue=2e-57, Organism=Caenorhabditis elegans, GI71996953, Length=446, Percent_Identity=32.0627802690583, Blast_Score=211, Evalue=4e-55, Organism=Caenorhabditis elegans, GI193206505, Length=425, Percent_Identity=33.4117647058824, Blast_Score=206, Evalue=2e-53, Organism=Caenorhabditis elegans, GI17537407, Length=414, Percent_Identity=34.0579710144928, Blast_Score=204, Evalue=5e-53, Organism=Caenorhabditis elegans, GI193206654, Length=434, Percent_Identity=31.7972350230415, Blast_Score=192, Evalue=3e-49, Organism=Caenorhabditis elegans, GI17541374, Length=392, Percent_Identity=32.3979591836735, Blast_Score=177, Evalue=1e-44, Organism=Drosophila melanogaster, GI24583025, Length=437, Percent_Identity=32.4942791762014, Blast_Score=196, Evalue=3e-50, Organism=Drosophila melanogaster, GI17137668, Length=437, Percent_Identity=32.4942791762014, Blast_Score=196, Evalue=3e-50, Organism=Drosophila melanogaster, GI24583023, Length=437, Percent_Identity=32.4942791762014, Blast_Score=196, Evalue=3e-50, Organism=Drosophila melanogaster, GI281360481, Length=452, Percent_Identity=28.9823008849558, Blast_Score=134, Evalue=8e-32, Organism=Drosophila melanogaster, GI281360483, Length=452, Percent_Identity=28.9823008849558, Blast_Score=134, Evalue=1e-31, Organism=Drosophila melanogaster, GI17137666, Length=452, Percent_Identity=28.9823008849558, Blast_Score=134, Evalue=1e-31,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001991 - InterPro: IPR018107 [H]
Pfam domain/function: PF00375 SDF [H]
EC number: NA
Molecular weight: Translated: 46213; Mature: 46081
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 5.0 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 4.8 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAAQSSKIGLTGKILIGMGAGILIGLLLRNFFGGSEWVQDYITEGFFHVIGTIFINSLK CCCCCCCCCCCCEEHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH MLVVPLVFISLVCGTCSLSEPSKLGRLGGKTLAFYLFTTAIALVVAISAAVLVQPGNASL HHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHH ASESMQYSAKEAPSLADVLINIVPSNPMKALSEGNMLQIIIFAVIFGFAISHIGERGRRV HHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHH AALFDDLNEVIMRVVTLIMQLAPYGVFALMGKLALTLGMETLESVIKYFMLVLVVLLFHG HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVVYPTLLKLFSGLSPLMFIRKMRDVQLFAFSTASSNATLPVTMEASEHRLGADNKVASF HHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEE TLPLGATINMDGTAIMQGVATVFIAQVFGIDLTITDYAMVVMTATLASIGTAGVPGVGLV EECCCCEECCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHH MLAMVLNQVGLPVEGIALILGVDRMLDMVRTAVNVTGDTVATVVIAKSEGALNEAVFNDP HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCC KAGKTAGSFDAEVHRGE CCCCCCCCCCCCCCCCC >Mature Secondary Structure AAAQSSKIGLTGKILIGMGAGILIGLLLRNFFGGSEWVQDYITEGFFHVIGTIFINSLK CCCCCCCCCCCEEHHHHCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH MLVVPLVFISLVCGTCSLSEPSKLGRLGGKTLAFYLFTTAIALVVAISAAVLVQPGNASL HHHHHHHHHHHHHCCCCCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCHH ASESMQYSAKEAPSLADVLINIVPSNPMKALSEGNMLQIIIFAVIFGFAISHIGERGRRV HHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCHHH AALFDDLNEVIMRVVTLIMQLAPYGVFALMGKLALTLGMETLESVIKYFMLVLVVLLFHG HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH FVVYPTLLKLFSGLSPLMFIRKMRDVQLFAFSTASSNATLPVTMEASEHRLGADNKVASF HHHHHHHHHHHCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEECCCCCCCCCCCCEEEE TLPLGATINMDGTAIMQGVATVFIAQVFGIDLTITDYAMVVMTATLASIGTAGVPGVGLV EECCCCEECCCHHHHHHHHHHHHHHHHHCCCEEHHHHHHHHHHHHHHHHCCCCCCHHHHH MLAMVLNQVGLPVEGIALILGVDRMLDMVRTAVNVTGDTVATVVIAKSEGALNEAVFNDP HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCHHHHHCCCC KAGKTAGSFDAEVHRGE CCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: L-aspartate [Periplasm]; Proton [Periplasm]; L-glutamate [Periplasm] [C]
Specific reaction: Proton [Periplasm] + L-aspartate [Periplasm] = Proton [Cytoplasm] + L-aspartate [Cytoplasm] Proton [Periplasm] + L-glutamate [Periplasm] = Proton [Cytoplasm] + L-glutamate [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 9579061; 9384377 [H]