Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

Click here to switch to the map view.

The map label for this gene is 119774422

Identifier: 119774422

GI number: 119774422

Start: 1573654

End: 1574322

Strand: Reverse

Name: 119774422

Synonym: Sama_1285

Alternate gene names: NA

Gene position: 1574322-1573654 (Counterclockwise)

Preceding gene: 119774423

Following gene: 119774421

Centisome position: 36.56

GC content: 50.37

Gene sequence:

>669_bases
ATGATTTTGCTGGTTGGTGGTGAAAAAGGCGGTAGTGGCAAGAGTTGCCTGGCGCAGAATATTGCAGTGCATATCACCCA
AAAATTCAATGCCAACGTGCTCATGGTGGACTGTGACCCCCAGCGAACAACCTCTGATTGGATCCAGGCCCGAAACAACG
ATCCCAGCCTGCCGCAAATCAATTGCATCCAGTTATACGGTAAAATCCGTAACGATCTCTTGAGCCTGAATGAACGTTTC
GACTATGTGATTGTGGACTGTGGTGGTCAGGATAACCTCGCCATGCGTGCCGCCATGTCGGTGGCAACTTACGTTGTTGT
GCCACTGAGGCCAAAACGGCGTGACCTCAAAACACTGCCGCACATGGAAGACATGCTCAGTACCTGTAAGATGGTTAACC
CCAAGATGGTCGCAACTGTCGTGCTGACTCAGTGCCCTGCTTTGCCCACTCAGGCCAAACGCATCATTGAAGCAAAGGAA
GTTGTTACATCCTTTGGTTTGAGAGTGCTGGACTCTGTCACCTTCAGCCGCAACATCTATGATGACAGTGAGGAAAAAGG
ATCCTCGGTCATCGAAATCGAGCCCGACGGCAAAGCCGCCGAAGAAATTCGTGCCATTGCCGATGAACTCTTGGCCATAC
CACCAGAAAATTCCTATGAGCTTAACTGA

Upstream 100 bases:

>100_bases
TCATATTGCTATGCAATTGATTTAAGCGATGCTTTTCTATCGTTTCCGACACACTGTTCTATACTGATGTGAAAAGATTG
GCTTTTACGGAGCGTCCATT

Downstream 100 bases:

>100_bases
CTTAAAGCGTAAAAAGCCCAAACAGGACCGCGGTAAAATATCGGTGGAAGATTTCATCGATGATGCCAACAATTATGCTC
ACGGACGGCCTACTTTGCTC

Product: hypothetical protein

Products: NA

Alternate protein names: Cobyrinic Acid A C-Diamide Synthase; Partition Protein; ParA Family Protein; Plasmid Partitioning Protein; ParA-Like Protein; Plasmid Partition Protein ParA; Partitioning Protein; ATPase Involved In Chromosome Partitioning-Like Protein; Plasmid Partition Protein ParA-Like Protein; Plasmid Partition Protein; PARA Protein; Plasmid Stability Protein ParA; Plasmid Stability/Partitioning Protein; ATPases Involved In Chromosome Partitioning; Chromosome Partitioning; ATPase; ParA Protein; Chromosome Partitioning Protein; CobQ/CobB/MinD/ParA Domain-Containing Protein; MinD/ParA Family ATPase; Plasmid Partitioning-Family Protein; Partition Protein A; ParA Partitioning-Like Protein; Chromosome Partitioning Protein ParA; Partition Protein ATPase Activity; ParA Partitioning Protein; Plasmid Segregation Oscillating ATPase ParF; Partitioning Protein ParA-Family; ATPase ParA Type; Partitioning Protein ParA Family; ParA Plasmid Partitioning Protein; Plasmid Stability Protein; ATPase Putative Partition Protein; Chromosome Partitioning ATPase ParA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MILLVGGEKGGSGKSCLAQNIAVHITQKFNANVLMVDCDPQRTTSDWIQARNNDPSLPQINCIQLYGKIRNDLLSLNERF
DYVIVDCGGQDNLAMRAAMSVATYVVVPLRPKRRDLKTLPHMEDMLSTCKMVNPKMVATVVLTQCPALPTQAKRIIEAKE
VVTSFGLRVLDSVTFSRNIYDDSEEKGSSVIEIEPDGKAAEEIRAIADELLAIPPENSYELN

Sequences:

>Translated_222_residues
MILLVGGEKGGSGKSCLAQNIAVHITQKFNANVLMVDCDPQRTTSDWIQARNNDPSLPQINCIQLYGKIRNDLLSLNERF
DYVIVDCGGQDNLAMRAAMSVATYVVVPLRPKRRDLKTLPHMEDMLSTCKMVNPKMVATVVLTQCPALPTQAKRIIEAKE
VVTSFGLRVLDSVTFSRNIYDDSEEKGSSVIEIEPDGKAAEEIRAIADELLAIPPENSYELN
>Mature_222_residues
MILLVGGEKGGSGKSCLAQNIAVHITQKFNANVLMVDCDPQRTTSDWIQARNNDPSLPQINCIQLYGKIRNDLLSLNERF
DYVIVDCGGQDNLAMRAAMSVATYVVVPLRPKRRDLKTLPHMEDMLSTCKMVNPKMVATVVLTQCPALPTQAKRIIEAKE
VVTSFGLRVLDSVTFSRNIYDDSEEKGSSVIEIEPDGKAAEEIRAIADELLAIPPENSYELN

Specific function: Unknown

COG id: COG1192

COG function: function code D; ATPases involved in chromosome partitioning

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24538; Mature: 24538

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.6 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILLVGGEKGGSGKSCLAQNIAVHITQKFNANVLMVDCDPQRTTSDWIQARNNDPSLPQI
CEEEEECCCCCCCHHHHHCCEEEEEEEECCCCEEEEECCCCCCCHHHHHCCCCCCCCCCH
NCIQLYGKIRNDLLSLNERFDYVIVDCGGQDNLAMRAAMSVATYVVVPLRPKRRDLKTLP
HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHEEEEEECCCCCCHHHCCC
HMEDMLSTCKMVNPKMVATVVLTQCPALPTQAKRIIEAKEVVTSFGLRVLDSVTFSRNIY
CHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DDSEEKGSSVIEIEPDGKAAEEIRAIADELLAIPPENSYELN
CCCHHCCCEEEEECCCCCHHHHHHHHHHHHEECCCCCCCCCC
>Mature Secondary Structure
MILLVGGEKGGSGKSCLAQNIAVHITQKFNANVLMVDCDPQRTTSDWIQARNNDPSLPQI
CEEEEECCCCCCCHHHHHCCEEEEEEEECCCCEEEEECCCCCCCHHHHHCCCCCCCCCCH
NCIQLYGKIRNDLLSLNERFDYVIVDCGGQDNLAMRAAMSVATYVVVPLRPKRRDLKTLP
HHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHEEEEEECCCCCCHHHCCC
HMEDMLSTCKMVNPKMVATVVLTQCPALPTQAKRIIEAKEVVTSFGLRVLDSVTFSRNIY
CHHHHHHHHHHCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
DDSEEKGSSVIEIEPDGKAAEEIRAIADELLAIPPENSYELN
CCCHHCCCEEEEECCCCCHHHHHHHHHHHHEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA