| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774423
Identifier: 119774423
GI number: 119774423
Start: 1574398
End: 1574700
Strand: Reverse
Name: 119774423
Synonym: Sama_1286
Alternate gene names: NA
Gene position: 1574700-1574398 (Counterclockwise)
Preceding gene: 119774424
Following gene: 119774422
Centisome position: 36.57
GC content: 44.55
Gene sequence:
>303_bases ATGGATGACAATCCAAAAGATTACGAAGAAAGACGCAGATCACTCAGGGTAGATTTAGAAGCAGAACGCGTGCTGGTCAG CTGGGTTGATAAAGATGGTATTGAACGAAATGACGATGGTGTCTGTATTGACCTGTCGAGGCGTGGCTTACTGTTTGAAT ATCGTCAGCCTTTCGCGTTGGGAGAACTGGTCGAAGTGACCTTTAATCCAGGCACAGACAAACAGAATACTGTTCAGGGG CAGGTTTGCCGCTGTAAAGAGAGTAAAGCGCAGAGTTATCATATTGCTATGCAATTGATTTAA
Upstream 100 bases:
>100_bases GGCTTTTTTTCATTCACCTTAATGGAGCATTGGTATTCTTAAGTAAAAGGAATTATGCTGATTTTTAAGCGCTTGTAATG TGCCAGAGGAGAAGGCCGTG
Downstream 100 bases:
>100_bases GCGATGCTTTTCTATCGTTTCCGACACACTGTTCTATACTGATGTGAAAAGATTGGCTTTTACGGAGCGTCCATTATGAT TTTGCTGGTTGGTGGTGAAA
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 100; Mature: 100
Protein sequence:
>100_residues MDDNPKDYEERRRSLRVDLEAERVLVSWVDKDGIERNDDGVCIDLSRRGLLFEYRQPFALGELVEVTFNPGTDKQNTVQG QVCRCKESKAQSYHIAMQLI
Sequences:
>Translated_100_residues MDDNPKDYEERRRSLRVDLEAERVLVSWVDKDGIERNDDGVCIDLSRRGLLFEYRQPFALGELVEVTFNPGTDKQNTVQG QVCRCKESKAQSYHIAMQLI >Mature_100_residues MDDNPKDYEERRRSLRVDLEAERVLVSWVDKDGIERNDDGVCIDLSRRGLLFEYRQPFALGELVEVTFNPGTDKQNTVQG QVCRCKESKAQSYHIAMQLI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 11605; Mature: 11605
Theoretical pI: Translated: 4.74; Mature: 4.74
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.0 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 5.0 %Cys+Met (Translated Protein) 3.0 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDDNPKDYEERRRSLRVDLEAERVLVSWVDKDGIERNDDGVCIDLSRRGLLFEYRQPFAL CCCCCCCHHHHHHHEECCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEECCCCCCC GELVEVTFNPGTDKQNTVQGQVCRCKESKAQSYHIAMQLI CEEEEEEECCCCCCCCCCCCCEEECCCCCCCEEEEEEEEC >Mature Secondary Structure MDDNPKDYEERRRSLRVDLEAERVLVSWVDKDGIERNDDGVCIDLSRRGLLFEYRQPFAL CCCCCCCHHHHHHHEECCCCCCEEEEEECCCCCCCCCCCCEEEEECCCCEEEECCCCCCC GELVEVTFNPGTDKQNTVQGQVCRCKESKAQSYHIAMQLI CEEEEEEECCCCCCCCCCCCCEEECCCCCCCEEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA