| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is cirA [H]
Identifier: 119774389
GI number: 119774389
Start: 1537855
End: 1540578
Strand: Direct
Name: cirA [H]
Synonym: Sama_1252
Alternate gene names: 119774389
Gene position: 1537855-1540578 (Clockwise)
Preceding gene: 119774388
Following gene: 119774390
Centisome position: 35.71
GC content: 52.28
Gene sequence:
>2724_bases ATGCTTAAGAACAGCATGCTGGCAAAATCTGTGCGTTTTGCCTTAGTAGCAGGTGCGACGACTGCAGCGTTTACCGCGCC AACTGTATATGCAGCTGACGAGGGCGAAAAAGTCGAGCGTATCGAAGTAACTGGCTCTCGTATCAAGCGTACTGACCTTG AAACTGCCAGCCCGATCACCATGTTTTCTGCTGAAGACATCGCGAACTCAGGTGTAGCTACCCTCGAAGACTTCGTACAA AACATTCCTGCCATCAACGGTGGCGCCGAAGGTTCTTCTGTAAACAACGGTAGCCGCGGCTTTGCGACTGCTTCTCTGCG TGGTCTGGGTTCAGGCCGTACTCTGGTTCTGATCAACGGTCGTCGTTTCGCTTCTGGCGATTTGAACTCTATTCCTACTG CTTACGTTGAGCGTATCGAAGTTCTGCGTGACGGTGCTTCCACCGTTTACGGTTCTGACGCTATCGCCGGTGTAATCAAC TTCATCACCAAGAAAGATTTTGAAGGTATTGAGTTCGGTGCTCAGTACGATATCGCCAGTGAAGGCGACGGTGAGAAGAC TCTGCTGTCTGTGACCACTGGTACTTCCAGCGATCGCGGCAACGTGGTTATGTCTCTGCAATACACCAAGCGTGAAGCGA TTTGGCAGGGCGATCGTGATTTCTCTGCTTGCCCAATATTTGAACGTGGTGGTGAGAAAGTTTGTGGTGGTTCAGGTACC ATCCCTTACGGTCAATTCTTCTATACTGGCGCTAACAGCCCAGCCGGCGGTCACGTAATTGACCCATCAACTGGTGCAAT TCGTAAGTTTGACCAAGCGGTTGATGGTTACAACTATGCCGTTGCCAGCTACATGGTGACCCCTCAGGAAGTGTTCAGCA TCAACGGTGCTGGCCGCTACGAAATCAGCGATACCCTGACCGGTTTCATGGAAGGTGGTTTCACCAACCGTCAGTCTGAC CAGTTGATGGCACCAGAAGGTACCTTCTGGGGACCAACCATGCCAGCCTCAAACCCATACAACCCAACCGGTGAAGACCT GATTGTGGTGCGTCGTCTGGCAGAGACCGGCGGTCGTGGTTTTACTCAGGACTTCTCCGACTACCGCATGGTATTTGGTC TGGAAGGTTCTCTGGGCGATTACTACTGGGATCTGTCATACAACTTCGCACGTTATGTTGACTCACGCCTGGACTTGGGC CGTGTAAACCCGACTCGTGCCGAAACCCTGCTTGACCCGGATCTGTGTGCTAAAGATTCAGATTGCCCAGGTATCTGGAA CCCACTGGCCGAAGGTACTCTGACGCCAGAAATGCTGGCTTACGCCTTCGTACCTAACTCGCCAGTGGTTCGCGGTGAGA CCCGTCAGCTGCAGGGTAACATCTCCGGTAGCCTGTTCGGTCTGGAACTGCCAGGTGGTGAAGTCATGTTCGCTGCCGGT TTTGAGAAGCGTTGGGATGAATACCAGAGCGTACCAGATGGTGCGGCTTCTATCGGCCAGATCTACTCTGTAGCTGGTGA GCCAACTTCCGGTGACTACTCTGTAAACGAAGCTTACGCTGAATTCGATATGCCAGTCCTCGAAGGCCTGCCATTCGCCG AGTCTGTACGCGTAACTGCTGCCGTACGTTACTCTGACTTCGACTTCCTGGATGATGGTTCTACCAACACCAAGTTCGGT CTGGAGTGGGTACCATTCGACGGTCTGATGCTGCGTTCTACTCTGGCTGACGGTTTCCGTGCACCAAGCGTGAGCGAACT GTATGCTCCTCAGTCTGAAACCAACCTGGCCTACGCAGAGCCTTGTAAGAACTACGCTACCGGTACTCAGAACGCGACCG TTAAAGCCAACTGTGCTGCCGAAGGTCTGCCAGGAAACTTTGAACTGTCTTCTAACCAGTCTTCTACTGTAGTGGGTGGT AACCCAGATCTGCAGCCAGAAGAGTCTGAAAGCTTTACTGCCGGTTTCGTATACAGCCACGACATCGGTTTCAGCGCCAG TGTTGATTACTTCAACATCGAAATCACCAACGGTATCGGTACTGCCGGTACTGACAACGTGGTTAGCGCTTGCTGGAACT CAGCCAACTTCTCAAGCCCACTGTGTGACCTGATCAAAGGCCCAAGCTTGACTGGTGATGCTCCACACCCAACTTCTCCA TACCGTACTGCGCTCGGTCCAGTTGCAGGTATCCTGCTGACCAACGCCAACCTGTCTACCTTCGAGACTTCAGGTTATGA CTTTGACCTGTCTTACAAGACTGACATCGGTGAAGGCCAGTTCTCTGCACTGCTGAACGGTACTTACCTGGAGCAGTATG ACTACCTGCCATACGAGGGTGCTGACATCGTTTCTGCCGCCGGTAAAGTGGCTGCTGACCAGTGGGAAACCACCCTGGCT GTGTTCCCAAGACTGCGTGCCAACCTGTCTTTGAACTACACCATGGATAACTGGTCTGTAAGCTGGCAGACCCGCTACCA GTCTGAAGGTGAAGACTACTTCGCCAGCGAAGACAACCTGGACAACATTGCTGATTCCATCTGGTATCACGATGTACAGG GTACTTACTTCGCTATGGACAACCTGTCTCTGACTGTGGGTGTGCGTAACCTGTTCGATGAAGAAGCTCCATACATCTCC AACAACCAGGATATGAACACCATCCCAGTGTCTTACGACACTGCCGGTCAGTACTGGTACGCTCGCGTAAATGTTAAGTT CTAA
Upstream 100 bases:
>100_bases TCCATCCACAGTTGAAAGTGACAAGGTGTTTACTTGTGTAACGCCTCTAACACAAGCCCACAGGGCAAATTATAAAAACT GAAATCCAGGGAGATAGACG
Downstream 100 bases:
>100_bases TTGAACTGACATTTATCGTAGCAACAAGCCAGCCTCCGGGCTGGCTTTTTATTTACAGGTGTAATGGTGATGAATACGCA ACAGGTGTTTATCTCTGGAG
Product: TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 907; Mature: 907
Protein sequence:
>907_residues MLKNSMLAKSVRFALVAGATTAAFTAPTVYAADEGEKVERIEVTGSRIKRTDLETASPITMFSAEDIANSGVATLEDFVQ NIPAINGGAEGSSVNNGSRGFATASLRGLGSGRTLVLINGRRFASGDLNSIPTAYVERIEVLRDGASTVYGSDAIAGVIN FITKKDFEGIEFGAQYDIASEGDGEKTLLSVTTGTSSDRGNVVMSLQYTKREAIWQGDRDFSACPIFERGGEKVCGGSGT IPYGQFFYTGANSPAGGHVIDPSTGAIRKFDQAVDGYNYAVASYMVTPQEVFSINGAGRYEISDTLTGFMEGGFTNRQSD QLMAPEGTFWGPTMPASNPYNPTGEDLIVVRRLAETGGRGFTQDFSDYRMVFGLEGSLGDYYWDLSYNFARYVDSRLDLG RVNPTRAETLLDPDLCAKDSDCPGIWNPLAEGTLTPEMLAYAFVPNSPVVRGETRQLQGNISGSLFGLELPGGEVMFAAG FEKRWDEYQSVPDGAASIGQIYSVAGEPTSGDYSVNEAYAEFDMPVLEGLPFAESVRVTAAVRYSDFDFLDDGSTNTKFG LEWVPFDGLMLRSTLADGFRAPSVSELYAPQSETNLAYAEPCKNYATGTQNATVKANCAAEGLPGNFELSSNQSSTVVGG NPDLQPEESESFTAGFVYSHDIGFSASVDYFNIEITNGIGTAGTDNVVSACWNSANFSSPLCDLIKGPSLTGDAPHPTSP YRTALGPVAGILLTNANLSTFETSGYDFDLSYKTDIGEGQFSALLNGTYLEQYDYLPYEGADIVSAAGKVAADQWETTLA VFPRLRANLSLNYTMDNWSVSWQTRYQSEGEDYFASEDNLDNIADSIWYHDVQGTYFAMDNLSLTVGVRNLFDEEAPYIS NNQDMNTIPVSYDTAGQYWYARVNVKF
Sequences:
>Translated_907_residues MLKNSMLAKSVRFALVAGATTAAFTAPTVYAADEGEKVERIEVTGSRIKRTDLETASPITMFSAEDIANSGVATLEDFVQ NIPAINGGAEGSSVNNGSRGFATASLRGLGSGRTLVLINGRRFASGDLNSIPTAYVERIEVLRDGASTVYGSDAIAGVIN FITKKDFEGIEFGAQYDIASEGDGEKTLLSVTTGTSSDRGNVVMSLQYTKREAIWQGDRDFSACPIFERGGEKVCGGSGT IPYGQFFYTGANSPAGGHVIDPSTGAIRKFDQAVDGYNYAVASYMVTPQEVFSINGAGRYEISDTLTGFMEGGFTNRQSD QLMAPEGTFWGPTMPASNPYNPTGEDLIVVRRLAETGGRGFTQDFSDYRMVFGLEGSLGDYYWDLSYNFARYVDSRLDLG RVNPTRAETLLDPDLCAKDSDCPGIWNPLAEGTLTPEMLAYAFVPNSPVVRGETRQLQGNISGSLFGLELPGGEVMFAAG FEKRWDEYQSVPDGAASIGQIYSVAGEPTSGDYSVNEAYAEFDMPVLEGLPFAESVRVTAAVRYSDFDFLDDGSTNTKFG LEWVPFDGLMLRSTLADGFRAPSVSELYAPQSETNLAYAEPCKNYATGTQNATVKANCAAEGLPGNFELSSNQSSTVVGG NPDLQPEESESFTAGFVYSHDIGFSASVDYFNIEITNGIGTAGTDNVVSACWNSANFSSPLCDLIKGPSLTGDAPHPTSP YRTALGPVAGILLTNANLSTFETSGYDFDLSYKTDIGEGQFSALLNGTYLEQYDYLPYEGADIVSAAGKVAADQWETTLA VFPRLRANLSLNYTMDNWSVSWQTRYQSEGEDYFASEDNLDNIADSIWYHDVQGTYFAMDNLSLTVGVRNLFDEEAPYIS NNQDMNTIPVSYDTAGQYWYARVNVKF >Mature_907_residues MLKNSMLAKSVRFALVAGATTAAFTAPTVYAADEGEKVERIEVTGSRIKRTDLETASPITMFSAEDIANSGVATLEDFVQ NIPAINGGAEGSSVNNGSRGFATASLRGLGSGRTLVLINGRRFASGDLNSIPTAYVERIEVLRDGASTVYGSDAIAGVIN FITKKDFEGIEFGAQYDIASEGDGEKTLLSVTTGTSSDRGNVVMSLQYTKREAIWQGDRDFSACPIFERGGEKVCGGSGT IPYGQFFYTGANSPAGGHVIDPSTGAIRKFDQAVDGYNYAVASYMVTPQEVFSINGAGRYEISDTLTGFMEGGFTNRQSD QLMAPEGTFWGPTMPASNPYNPTGEDLIVVRRLAETGGRGFTQDFSDYRMVFGLEGSLGDYYWDLSYNFARYVDSRLDLG RVNPTRAETLLDPDLCAKDSDCPGIWNPLAEGTLTPEMLAYAFVPNSPVVRGETRQLQGNISGSLFGLELPGGEVMFAAG FEKRWDEYQSVPDGAASIGQIYSVAGEPTSGDYSVNEAYAEFDMPVLEGLPFAESVRVTAAVRYSDFDFLDDGSTNTKFG LEWVPFDGLMLRSTLADGFRAPSVSELYAPQSETNLAYAEPCKNYATGTQNATVKANCAAEGLPGNFELSSNQSSTVVGG NPDLQPEESESFTAGFVYSHDIGFSASVDYFNIEITNGIGTAGTDNVVSACWNSANFSSPLCDLIKGPSLTGDAPHPTSP YRTALGPVAGILLTNANLSTFETSGYDFDLSYKTDIGEGQFSALLNGTYLEQYDYLPYEGADIVSAAGKVAADQWETTLA VFPRLRANLSLNYTMDNWSVSWQTRYQSEGEDYFASEDNLDNIADSIWYHDVQGTYFAMDNLSLTVGVRNLFDEEAPYIS NNQDMNTIPVSYDTAGQYWYARVNVKF
Specific function: Not yet known. Postulated to participate in iron transport. Outer membrane receptor for colicins IA and IB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=164, Percent_Identity=34.7560975609756, Blast_Score=89, Evalue=1e-18, Organism=Escherichia coli, GI1790405, Length=187, Percent_Identity=29.9465240641711, Blast_Score=82, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 97989; Mature: 97989
Theoretical pI: Translated: 4.05; Mature: 4.05
Prosite motif: PS00107 PROTEIN_KINASE_ATP
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLKNSMLAKSVRFALVAGATTAAFTAPTVYAADEGEKVERIEVTGSRIKRTDLETASPIT CCCCHHHHHHHEEEEEECCCHHEEECCEEEECCCCCCEEEEEECCCCEEECCCCCCCCEE MFSAEDIANSGVATLEDFVQNIPAINGGAEGSSVNNGSRGFATASLRGLGSGRTLVLING EEEHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECC RRFASGDLNSIPTAYVERIEVLRDGASTVYGSDAIAGVINFITKKDFEGIEFGAQYDIAS CEECCCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCEECCCC EGDGEKTLLSVTTGTSSDRGNVVMSLQYTKREAIWQGDRDFSACPIFERGGEKVCGGSGT CCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHCCCCCCCCCCCHHCCCCEECCCCCC IPYGQFFYTGANSPAGGHVIDPSTGAIRKFDQAVDGYNYAVASYMVTPQEVFSINGAGRY CCCCCEEEECCCCCCCCEEECCCCHHHHHHHHHHCCCCEEEEEEEECHHHHEEECCCCEE EISDTLTGFMEGGFTNRQSDQLMAPEGTFWGPTMPASNPYNPTGEDLIVVRRLAETGGRG EHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC FTQDFSDYRMVFGLEGSLGDYYWDLSYNFARYVDSRLDLGRVNPTRAETLLDPDLCAKDS CCCCCCCEEEEEEECCCCCCEEEECCCCHHHHHHHHCCCCCCCCCHHHHHCCCHHCCCCC DCPGIWNPLAEGTLTPEMLAYAFVPNSPVVRGETRQLQGNISGSLFGLELPGGEVMFAAG CCCCCCCHHHCCCCCHHHEEEEECCCCCEECCCHHEECCCCCCEEEEEECCCCCEEEECC FEKRWDEYQSVPDGAASIGQIYSVAGEPTSGDYSVNEAYAEFDMPVLEGLPFAESVRVTA CHHHHHHHHCCCCCHHHHHHHHEECCCCCCCCCCHHHHHHHCCCHHHHCCCCHHCEEEEE AVRYSDFDFLDDGSTNTKFGLEWVPFDGLMLRSTLADGFRAPSVSELYAPQSETNLAYAE EEEECCCCCCCCCCCCCEECEEEECCCCCHHHHHHHHCCCCCCHHHHCCCCCCCCCEEHH PCKNYATGTQNATVKANCAAEGLPGNFELSSNQSSTVVGGNPDLQPEESESFTAGFVYSH HHHHHCCCCCCCEEEECCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCEEEEEEEEE DIGFSASVDYFNIEITNGIGTAGTDNVVSACWNSANFSSPLCDLIKGPSLTGDAPHPTSP CCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCC YRTALGPVAGILLTNANLSTFETSGYDFDLSYKTDIGEGQFSALLNGTYLEQYDYLPYEG HHHHHHHHEEEEEECCCCCEEECCCEEEEEEECCCCCCCHHHHHHCCEEHHHCCCCCCCC ADIVSAAGKVAADQWETTLAVFPRLRANLSLNYTMDNWSVSWQTRYQSEGEDYFASEDNL CHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCH DNIADSIWYHDVQGTYFAMDNLSLTVGVRNLFDEEAPYISNNQDMNTIPVSYDTAGQYWY HHHHHHHEEEECCCEEEEECCCEEEEEHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEE ARVNVKF EEEEEEC >Mature Secondary Structure MLKNSMLAKSVRFALVAGATTAAFTAPTVYAADEGEKVERIEVTGSRIKRTDLETASPIT CCCCHHHHHHHEEEEEECCCHHEEECCEEEECCCCCCEEEEEECCCCEEECCCCCCCCEE MFSAEDIANSGVATLEDFVQNIPAINGGAEGSSVNNGSRGFATASLRGLGSGRTLVLING EEEHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEECC RRFASGDLNSIPTAYVERIEVLRDGASTVYGSDAIAGVINFITKKDFEGIEFGAQYDIAS CEECCCCCCCCCHHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHCCCCCCCCCCEECCCC EGDGEKTLLSVTTGTSSDRGNVVMSLQYTKREAIWQGDRDFSACPIFERGGEKVCGGSGT CCCCCEEEEEEEECCCCCCCCEEEEEEECCHHHHHCCCCCCCCCCCHHCCCCEECCCCCC IPYGQFFYTGANSPAGGHVIDPSTGAIRKFDQAVDGYNYAVASYMVTPQEVFSINGAGRY CCCCCEEEECCCCCCCCEEECCCCHHHHHHHHHHCCCCEEEEEEEECHHHHEEECCCCEE EISDTLTGFMEGGFTNRQSDQLMAPEGTFWGPTMPASNPYNPTGEDLIVVRRLAETGGRG EHHHHHHHHHCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCC FTQDFSDYRMVFGLEGSLGDYYWDLSYNFARYVDSRLDLGRVNPTRAETLLDPDLCAKDS CCCCCCCEEEEEEECCCCCCEEEECCCCHHHHHHHHCCCCCCCCCHHHHHCCCHHCCCCC DCPGIWNPLAEGTLTPEMLAYAFVPNSPVVRGETRQLQGNISGSLFGLELPGGEVMFAAG CCCCCCCHHHCCCCCHHHEEEEECCCCCEECCCHHEECCCCCCEEEEEECCCCCEEEECC FEKRWDEYQSVPDGAASIGQIYSVAGEPTSGDYSVNEAYAEFDMPVLEGLPFAESVRVTA CHHHHHHHHCCCCCHHHHHHHHEECCCCCCCCCCHHHHHHHCCCHHHHCCCCHHCEEEEE AVRYSDFDFLDDGSTNTKFGLEWVPFDGLMLRSTLADGFRAPSVSELYAPQSETNLAYAE EEEECCCCCCCCCCCCCEECEEEECCCCCHHHHHHHHCCCCCCHHHHCCCCCCCCCEEHH PCKNYATGTQNATVKANCAAEGLPGNFELSSNQSSTVVGGNPDLQPEESESFTAGFVYSH HHHHHCCCCCCCEEEECCCCCCCCCCEEECCCCCCEEECCCCCCCCCCCCCEEEEEEEEE DIGFSASVDYFNIEITNGIGTAGTDNVVSACWNSANFSSPLCDLIKGPSLTGDAPHPTSP CCCCEEEEEEEEEEEECCCCCCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCC YRTALGPVAGILLTNANLSTFETSGYDFDLSYKTDIGEGQFSALLNGTYLEQYDYLPYEG HHHHHHHHEEEEEECCCCCEEECCCEEEEEEECCCCCCCHHHHHHCCEEHHHCCCCCCCC ADIVSAAGKVAADQWETTLAVFPRLRANLSLNYTMDNWSVSWQTRYQSEGEDYFASEDNL CHHHHHCCCHHHHHHHHHHHHHHHHHCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCH DNIADSIWYHDVQGTYFAMDNLSLTVGVRNLFDEEAPYISNNQDMNTIPVSYDTAGQYWY HHHHHHHEEEECCCEEEEECCCEEEEEHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEE ARVNVKF EEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2644220; 9278503; 3316180; 1315732; 2160948 [H]