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The map label for this gene is ompC [C]

Identifier: 119774388

GI number: 119774388

Start: 1536292

End: 1537500

Strand: Direct

Name: ompC [C]

Synonym: Sama_1251

Alternate gene names: 119774388

Gene position: 1536292-1537500 (Clockwise)

Preceding gene: 119774387

Following gene: 119774389

Centisome position: 35.68

GC content: 49.38

Gene sequence:

>1209_bases
ATGAACAAGACTCTCATCGCCGGCGCAATATTGGCCTCGCTGGTGGCTCCCACCGTTTCTGCCATCGAAATTTACAAAGA
CGACAAAAACGCCGTCTCCATCGGTGGTTTTATCGACGCCCGCGCAATTCATACCCAGGACACCACAGAAGTGGTAAACG
GTGCCTCTCGTATTAATTTTGGCTTTGAGCGTGCCCTCAGCCACGACTGGAAAGCCTTTGCCCTGCTCGAGTGGGGGATC
AATCCCTTCGGCAGCAGTGAGATTGTTTATAACAACAAATTCGAAACCGTACAGGACGAGTTCTTTTACAACCGTCTTGG
TTATGCCGGTCTGAGCCATGACACCTGGGGTACCCTCACCATCGGTAAACAGTGGGGCGCATGGTATGACGTGGTCTACG
GCACCAACTACGGCTTTGTGTGGGATGGAAACGCCGCGGGCGTTTATACCTACAACAAAGATGATGGTGCAGTAAATGGC
ACCGGCCGCGGTGATAAAGTCATCCAATATCGTAACAGCGTGGGTGACTTCAGCTATGCCATCCAGGCTCAGTTAAAAAA
CAGCACTTTCTTCACCTGCGACTTCGACGATATCACTCAAGATGACTGCCAAGCCTTGTGGCAGCAGGGCAAGCGCGAAG
CCCAGCAGGTTGAATATAACTACACCTACGGCGGCGCAGTTACCTGGAAGGCAACTGACAAATTGGCATTGGCGGTGGGC
GTAAACCGCGGTGAATTTGATGTGACCTATGGTAACGGCGACCAAATTACTGCGGTTGATCTGATCTACGGCGTGGGCGC
GACCTGGGGTGATTTTGACACAGATGGTTTTTATGCCTCTCTTAATTACAACTACAACGAAAACCACGATACAGACAACA
TAGGTCGCTTGATTAAAGAGGCCTTTGGTATCGAGTCACTGTTCTCCTACAAATTTGAGAATGGTTTCCGCGCATTTGTA
TCTTATAACTTGCTGGACGCCGGTAACGACTACGTTATCCAACCAAACTTTAATGCCGACCCCAACGACGTATTCAAACG
TCAATTTGTGGTAGCGGGTTTACATTATGTTTGGGATAAAGACACAGTGCTGTATGTGGAAGGACGTAAAGACTTCAGTG
ATTTCAGCAGTGCCGATGTCGAACAGGAAGCGAGAATGGCGCTTTCGGAAGATGACGGTATCGCAATAGGCATTCGTTAC
ACATTGTAA

Upstream 100 bases:

>100_bases
CGAGCGCTTCGTGGTTTGCTAATCTTCGGCGGTTCCAGGATGGAAATAAAATTACGGAAAATATCCTGCGACTCGATCTC
CACAAATAAGGTTAGGCACC

Downstream 100 bases:

>100_bases
TAAAAATGTTACTGAAAAAGACCCGGTTAATCCGGGTTTTTTTATGCCTGATTAAACGCATAACCACCTGTTTGCTATTG
ACTTATAGACACTTATTCTC

Product: outer membrane porin

Products: NA

Alternate protein names: Porin Gram-Negative Type; Outer Membrane Protein N; Outer Membrane Pore Protein; Outer Membrane Protein; Tetrachloroethylene Dehalogenase; Outer Membrane Protein N Non-Specific Porin

Number of amino acids: Translated: 402; Mature: 402

Protein sequence:

>402_residues
MNKTLIAGAILASLVAPTVSAIEIYKDDKNAVSIGGFIDARAIHTQDTTEVVNGASRINFGFERALSHDWKAFALLEWGI
NPFGSSEIVYNNKFETVQDEFFYNRLGYAGLSHDTWGTLTIGKQWGAWYDVVYGTNYGFVWDGNAAGVYTYNKDDGAVNG
TGRGDKVIQYRNSVGDFSYAIQAQLKNSTFFTCDFDDITQDDCQALWQQGKREAQQVEYNYTYGGAVTWKATDKLALAVG
VNRGEFDVTYGNGDQITAVDLIYGVGATWGDFDTDGFYASLNYNYNENHDTDNIGRLIKEAFGIESLFSYKFENGFRAFV
SYNLLDAGNDYVIQPNFNADPNDVFKRQFVVAGLHYVWDKDTVLYVEGRKDFSDFSSADVEQEARMALSEDDGIAIGIRY
TL

Sequences:

>Translated_402_residues
MNKTLIAGAILASLVAPTVSAIEIYKDDKNAVSIGGFIDARAIHTQDTTEVVNGASRINFGFERALSHDWKAFALLEWGI
NPFGSSEIVYNNKFETVQDEFFYNRLGYAGLSHDTWGTLTIGKQWGAWYDVVYGTNYGFVWDGNAAGVYTYNKDDGAVNG
TGRGDKVIQYRNSVGDFSYAIQAQLKNSTFFTCDFDDITQDDCQALWQQGKREAQQVEYNYTYGGAVTWKATDKLALAVG
VNRGEFDVTYGNGDQITAVDLIYGVGATWGDFDTDGFYASLNYNYNENHDTDNIGRLIKEAFGIESLFSYKFENGFRAFV
SYNLLDAGNDYVIQPNFNADPNDVFKRQFVVAGLHYVWDKDTVLYVEGRKDFSDFSSADVEQEARMALSEDDGIAIGIRY
TL
>Mature_402_residues
MNKTLIAGAILASLVAPTVSAIEIYKDDKNAVSIGGFIDARAIHTQDTTEVVNGASRINFGFERALSHDWKAFALLEWGI
NPFGSSEIVYNNKFETVQDEFFYNRLGYAGLSHDTWGTLTIGKQWGAWYDVVYGTNYGFVWDGNAAGVYTYNKDDGAVNG
TGRGDKVIQYRNSVGDFSYAIQAQLKNSTFFTCDFDDITQDDCQALWQQGKREAQQVEYNYTYGGAVTWKATDKLALAVG
VNRGEFDVTYGNGDQITAVDLIYGVGATWGDFDTDGFYASLNYNYNENHDTDNIGRLIKEAFGIESLFSYKFENGFRAFV
SYNLLDAGNDYVIQPNFNADPNDVFKRQFVVAGLHYVWDKDTVLYVEGRKDFSDFSSADVEQEARMALSEDDGIAIGIRY
TL

Specific function: Forms Passive Diffusion Pores Which Allow Small Molecular Weight Hydrophilic Materials Across The Outer Membrane. [C]

COG id: COG3203

COG function: function code M; Outer membrane protein (porin)

Gene ontology:

Cell location: Integral Membrane Protein. Outer Membrane [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 6020 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 19068 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44911; Mature: 44911

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
0.5 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKTLIAGAILASLVAPTVSAIEIYKDDKNAVSIGGFIDARAIHTQDTTEVVNGASRINF
CCCEEHHHHHHHHHHHCCCEEEEEEECCCCEEEECCEEEEEEECCCCHHHHHCCHHHCCC
GFERALSHDWKAFALLEWGINPFGSSEIVYNNKFETVQDEFFYNRLGYAGLSHDTWGTLT
CHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEE
IGKQWGAWYDVVYGTNYGFVWDGNAAGVYTYNKDDGAVNGTGRGDKVIQYRNSVGDFSYA
ECCCCCCEEEEEEECCCCEEECCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEE
IQAQLKNSTFFTCDFDDITQDDCQALWQQGKREAQQVEYNYTYGGAVTWKATDKLALAVG
EEEEECCCEEEEECCCCCCHHHHHHHHHHCCHHHHHEEEEEEECCEEEEECCCEEEEEEE
VNRGEFDVTYGNGDQITAVDLIYGVGATWGDFDTDGFYASLNYNYNENHDTDNIGRLIKE
CCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
AFGIESLFSYKFENGFRAFVSYNLLDAGNDYVIQPNFNADPNDVFKRQFVVAGLHYVWDK
HHCHHHHHHHHHCCCEEEEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHEEEEEEECC
DTVLYVEGRKDFSDFSSADVEQEARMALSEDDGIAIGIRYTL
CEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEC
>Mature Secondary Structure
MNKTLIAGAILASLVAPTVSAIEIYKDDKNAVSIGGFIDARAIHTQDTTEVVNGASRINF
CCCEEHHHHHHHHHHHCCCEEEEEEECCCCEEEECCEEEEEEECCCCHHHHHCCHHHCCC
GFERALSHDWKAFALLEWGINPFGSSEIVYNNKFETVQDEFFYNRLGYAGLSHDTWGTLT
CHHHHHCCCCEEEEEEEECCCCCCCCEEEECCCCCHHHHHHHHHHHCCCCCCCCCCEEEE
IGKQWGAWYDVVYGTNYGFVWDGNAAGVYTYNKDDGAVNGTGRGDKVIQYRNSVGDFSYA
ECCCCCCEEEEEEECCCCEEECCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCCEEEE
IQAQLKNSTFFTCDFDDITQDDCQALWQQGKREAQQVEYNYTYGGAVTWKATDKLALAVG
EEEEECCCEEEEECCCCCCHHHHHHHHHHCCHHHHHEEEEEEECCEEEEECCCEEEEEEE
VNRGEFDVTYGNGDQITAVDLIYGVGATWGDFDTDGFYASLNYNYNENHDTDNIGRLIKE
CCCCEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
AFGIESLFSYKFENGFRAFVSYNLLDAGNDYVIQPNFNADPNDVFKRQFVVAGLHYVWDK
HHCHHHHHHHHHCCCEEEEEEEEEEECCCCEEECCCCCCCHHHHHHHHHHHEEEEEEECC
DTVLYVEGRKDFSDFSSADVEQEARMALSEDDGIAIGIRYTL
CEEEEEECCCCCCCCCCCCHHHHHHHHCCCCCCEEEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA