| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is feoB [H]
Identifier: 119774352
GI number: 119774352
Start: 1494706
End: 1497000
Strand: Direct
Name: feoB [H]
Synonym: Sama_1215
Alternate gene names: 119774352
Gene position: 1494706-1497000 (Clockwise)
Preceding gene: 119774351
Following gene: 119774353
Centisome position: 34.71
GC content: 53.16
Gene sequence:
>2295_bases ATGGCTAAGCAATTTCACTGTGTCACCGTTGGTAATCCCAATGCCGGTAAGTCCACCCTTTTTAATGCCTTGACCGGTGC CAACCAACAAGTGGGTAATTGGTCAGGGGTAACGGTAGAAAAGAAAACTGGCCATTTCAGTCTGAGCGGCGCTGATGTAT ACCTCACTGATTTGCCTGGTATTTATGACATTCTGCCTGCGGGTAAGAGCTGCGATTGTTCCCTCGATGAACAAATCGCC CAGCAGTATCTGGCTGAACAGCATATGGATGGCATTATTAATCTGATAGATGCCACCAACATTGAGCGCCATCTGTATCT CACCGTGCAACTGCGCGAGCTTGGCATCCCCATGGTGGTGGTGGTCAATAAAATCGACATCGCCCTGAAACGTGGTGTCC ATGTCGATATTCAAAAGATGTCTCAGGAGCTGGGCTGTCCCGTGATTGCCGTATGCGCCAGAGAAGCGAAAGACGTTCTC AAGGTGCAGGAGCAGGTTGTTGCTCTGTTGGAAGGCAAGGTCTCAGAAGCCCCCTTGATGCTGGGTTATGAGAGTGCCAT TGAGCGCGCCGTCGCTGAACTTATGGAAAAAGATAACGGCCTTAGCCGTGGCCGTGCGCTTGCCATGCTGGGCAACGGTT TGGGCTGTGGCCAGTGCAAGAACAGCGAGTTTGAATCGGAAGTAAGCCGCTGCGCCGATGGTCTTAAGGCCAAGGGGCTG GACATCGAATTGATGGTGGCCACGACACGCTTTAATTTTGTTGAGCGCGTTTATCGTGCGGCTGTTGCCAATGATGACGC GCCTACCTTAAGTGACCGTCTGGACGGACTGGTGTTACACCCGGTGTTGGGCGTACCCGTGTTCCTGCTGGTCATGTATC TGATGTTCATGTTCGCCATTAACGTGGGCAGTGCCTTTATTGATTTTTTCGATATTACCGCCGGCGCCTTGTTTGTTGAC CACTTTGGCGCCCTGCTTGGCAATTGGGGCGCGCCAGAGTGGCTTGTTACCCTGCTGGCCGGTGGTATTGGTCAGGGCAT TCAAACAGTCGCTACCTTTATTCCGGTGATTATGGCGTTGTTTCTGGCGTTGTCGGTGTTGGAAAGCTCTGGCTATATGT CCCGCGCCGCCTTTGTAGTGGACGGACTGATGCGCCGCATCGGTTTGCCAGGCAAGGCGTTTGTGCCCATGATTGTTGGC TTTGGCTGCTCAGTACCCGCCATCATGGCTACCCGTACTCTGGGCAGTGAACGTGAGCGTATTGTAACCGGTATGATGGC ACCCTTTATGTCCTGTGGAGCACGTCTGCCGGTGTACGCGCTGTTTGCGGCGGCTTTCTTCCCTGAGTCAGGCCAGAATC TGGTGTTCCTGCTTTATATCATCGGTATTATCGCTGCCATTGGCACCGGGCTTTTGCTGCGAAGCACCCTGTTGCCGGGT GTGAGCAGCGCCGTGGTAATGGAGCTGCCAAACTACGAGATGCCTAAATTTAAGGCTGTGGTATCCCGTACTGGCAAGCG TACCAAAAGCTTTATCCTTGGCGCCGGTAAAACCATTGTGCTGGTGGTCACCCTGCTGAACTTTATCAACGCCGTTGGCG TGGATGGCACCTTTGGCCATGAAGACAGCAGCGAGTCTGTGCTTAGCGTGGTGAGTCAGAAGGTTACACCCATTTTTTCA CCCATGGGGATTGAAGAAGGCAACTGGCCTGCCACAGTGGGTATCATCACAGGGATTTTTGCCAAAGAAGCGGTAGTGGG TACCCTGAACAGCCTTTACAGCACCCCCGGTGCTGACGAAGAAGGGCTTACGCCGCTGTCTGAGTCTGTCAGTGAGGCGC TTGCCACTATTCCTGCAAACTTGCTGGGTATTGCTCCTGAAGATCCTATGTCCATGTCGGTGGGCGATGTATCCAGTGTG GATACTGCAGCAGAAGAGCAGGGCGTTGACCGCTCAACCTTCAGCGCTCTGCAGTCTGGATTCAGTGGTCAGCTTGCTGC TTTCTCTTATCTGGTGTTTGTGCTGCTTTACACCCCGTGTGTAGCAGCGATGGGCGCGCTGGTAAACGAGTTTGGTAAGG GGTGGGCTGTTTTTGCAGCAACCTGGACCTTTGGCCTGGCTTATGGCACAGCAACTCTGGTGTATCAGTGGGGCAATGTG GCCGTGCATCCACTGCAAACCCTGCTCTGGACTGCCGTTATTGCCGGTGCTTTGATAGCCTTCTTCATCTATCTGAAGCA AAAAGGTCGTAAGACCCAACAGATTATTCCCGGGATACGCATCATCACAGAATGA
Upstream 100 bases:
>100_bases GGCAGTGGTATAGAGCTCGATATCCGCGGCAGTAAGCTTTGTATGCGTCTGGAGTTGGCTCAAATCATTGAGGTCAATCC AATTGAGGCGGGAGTCGTTC
Downstream 100 bases:
>100_bases TGAGCATCAACGCGAAATCAAAAAAGCAGCCCGCGGGCTGCTTTTTTAATAGCAACGCCCTGAAGCGGGCAGTTTTTTAT GTGCGGGCATTGTCAGCGGC
Product: ferrous iron transport protein B
Products: Fe (II) [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 764; Mature: 763
Protein sequence:
>764_residues MAKQFHCVTVGNPNAGKSTLFNALTGANQQVGNWSGVTVEKKTGHFSLSGADVYLTDLPGIYDILPAGKSCDCSLDEQIA QQYLAEQHMDGIINLIDATNIERHLYLTVQLRELGIPMVVVVNKIDIALKRGVHVDIQKMSQELGCPVIAVCAREAKDVL KVQEQVVALLEGKVSEAPLMLGYESAIERAVAELMEKDNGLSRGRALAMLGNGLGCGQCKNSEFESEVSRCADGLKAKGL DIELMVATTRFNFVERVYRAAVANDDAPTLSDRLDGLVLHPVLGVPVFLLVMYLMFMFAINVGSAFIDFFDITAGALFVD HFGALLGNWGAPEWLVTLLAGGIGQGIQTVATFIPVIMALFLALSVLESSGYMSRAAFVVDGLMRRIGLPGKAFVPMIVG FGCSVPAIMATRTLGSERERIVTGMMAPFMSCGARLPVYALFAAAFFPESGQNLVFLLYIIGIIAAIGTGLLLRSTLLPG VSSAVVMELPNYEMPKFKAVVSRTGKRTKSFILGAGKTIVLVVTLLNFINAVGVDGTFGHEDSSESVLSVVSQKVTPIFS PMGIEEGNWPATVGIITGIFAKEAVVGTLNSLYSTPGADEEGLTPLSESVSEALATIPANLLGIAPEDPMSMSVGDVSSV DTAAEEQGVDRSTFSALQSGFSGQLAAFSYLVFVLLYTPCVAAMGALVNEFGKGWAVFAATWTFGLAYGTATLVYQWGNV AVHPLQTLLWTAVIAGALIAFFIYLKQKGRKTQQIIPGIRIITE
Sequences:
>Translated_764_residues MAKQFHCVTVGNPNAGKSTLFNALTGANQQVGNWSGVTVEKKTGHFSLSGADVYLTDLPGIYDILPAGKSCDCSLDEQIA QQYLAEQHMDGIINLIDATNIERHLYLTVQLRELGIPMVVVVNKIDIALKRGVHVDIQKMSQELGCPVIAVCAREAKDVL KVQEQVVALLEGKVSEAPLMLGYESAIERAVAELMEKDNGLSRGRALAMLGNGLGCGQCKNSEFESEVSRCADGLKAKGL DIELMVATTRFNFVERVYRAAVANDDAPTLSDRLDGLVLHPVLGVPVFLLVMYLMFMFAINVGSAFIDFFDITAGALFVD HFGALLGNWGAPEWLVTLLAGGIGQGIQTVATFIPVIMALFLALSVLESSGYMSRAAFVVDGLMRRIGLPGKAFVPMIVG FGCSVPAIMATRTLGSERERIVTGMMAPFMSCGARLPVYALFAAAFFPESGQNLVFLLYIIGIIAAIGTGLLLRSTLLPG VSSAVVMELPNYEMPKFKAVVSRTGKRTKSFILGAGKTIVLVVTLLNFINAVGVDGTFGHEDSSESVLSVVSQKVTPIFS PMGIEEGNWPATVGIITGIFAKEAVVGTLNSLYSTPGADEEGLTPLSESVSEALATIPANLLGIAPEDPMSMSVGDVSSV DTAAEEQGVDRSTFSALQSGFSGQLAAFSYLVFVLLYTPCVAAMGALVNEFGKGWAVFAATWTFGLAYGTATLVYQWGNV AVHPLQTLLWTAVIAGALIAFFIYLKQKGRKTQQIIPGIRIITE >Mature_763_residues AKQFHCVTVGNPNAGKSTLFNALTGANQQVGNWSGVTVEKKTGHFSLSGADVYLTDLPGIYDILPAGKSCDCSLDEQIAQ QYLAEQHMDGIINLIDATNIERHLYLTVQLRELGIPMVVVVNKIDIALKRGVHVDIQKMSQELGCPVIAVCAREAKDVLK VQEQVVALLEGKVSEAPLMLGYESAIERAVAELMEKDNGLSRGRALAMLGNGLGCGQCKNSEFESEVSRCADGLKAKGLD IELMVATTRFNFVERVYRAAVANDDAPTLSDRLDGLVLHPVLGVPVFLLVMYLMFMFAINVGSAFIDFFDITAGALFVDH FGALLGNWGAPEWLVTLLAGGIGQGIQTVATFIPVIMALFLALSVLESSGYMSRAAFVVDGLMRRIGLPGKAFVPMIVGF GCSVPAIMATRTLGSERERIVTGMMAPFMSCGARLPVYALFAAAFFPESGQNLVFLLYIIGIIAAIGTGLLLRSTLLPGV SSAVVMELPNYEMPKFKAVVSRTGKRTKSFILGAGKTIVLVVTLLNFINAVGVDGTFGHEDSSESVLSVVSQKVTPIFSP MGIEEGNWPATVGIITGIFAKEAVVGTLNSLYSTPGADEEGLTPLSESVSEALATIPANLLGIAPEDPMSMSVGDVSSVD TAAEEQGVDRSTFSALQSGFSGQLAAFSYLVFVLLYTPCVAAMGALVNEFGKGWAVFAATWTFGLAYGTATLVYQWGNVA VHPLQTLLWTAVIAGALIAFFIYLKQKGRKTQQIIPGIRIITE
Specific function: Fe(2+) uptake system, probably driven by GTP [H]
COG id: COG0370
COG function: function code P; Fe2+ transport system protein B
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the feoB (TC 9.A.8) family [H]
Homologues:
Organism=Escherichia coli, GI1789813, Length=735, Percent_Identity=41.0884353741497, Blast_Score=505, Evalue=1e-144,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003373 - InterPro: IPR011640 - InterPro: IPR011619 - InterPro: IPR011642 - InterPro: IPR006073 [H]
Pfam domain/function: PF07664 FeoB_C; PF02421 FeoB_N; PF07670 Gate [H]
EC number: NA
Molecular weight: Translated: 81453; Mature: 81322
Theoretical pI: Translated: 4.95; Mature: 4.95
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 4.7 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKQFHCVTVGNPNAGKSTLFNALTGANQQVGNWSGVTVEKKTGHFSLSGADVYLTDLPG CCCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEECCCCEEEECCCC IYDILPAGKSCDCSLDEQIAQQYLAEQHMDGIINLIDATNIERHLYLTVQLRELGIPMVV HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCCCEEE VVNKIDIALKRGVHVDIQKMSQELGCPVIAVCAREAKDVLKVQEQVVALLEGKVSEAPLM EEEHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE LGYESAIERAVAELMEKDNGLSRGRALAMLGNGLGCGQCKNSEFESEVSRCADGLKAKGL ECHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC DIELMVATTRFNFVERVYRAAVANDDAPTLSDRLDGLVLHPVLGVPVFLLVMYLMFMFAI CEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHH NVGSAFIDFFDITAGALFVDHFGALLGNWGAPEWLVTLLAGGIGQGIQTVATFIPVIMAL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH FLALSVLESSGYMSRAAFVVDGLMRRIGLPGKAFVPMIVGFGCSVPAIMATRTLGSERER HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHCCCHHHH IVTGMMAPFMSCGARLPVYALFAAAFFPESGQNLVFLLYIIGIIAAIGTGLLLRSTLLPG HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC VSSAVVMELPNYEMPKFKAVVSRTGKRTKSFILGAGKTIVLVVTLLNFINAVGVDGTFGH CCCCEEEECCCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCC EDSSESVLSVVSQKVTPIFSPMGIEEGNWPATVGIITGIFAKEAVVGTLNSLYSTPGADE CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EGLTPLSESVSEALATIPANLLGIAPEDPMSMSVGDVSSVDTAAEEQGVDRSTFSALQSG CCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCC FSGQLAAFSYLVFVLLYTPCVAAMGALVNEFGKGWAVFAATWTFGLAYGTATLVYQWGNV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHEEEECCCC AVHPLQTLLWTAVIAGALIAFFIYLKQKGRKTQQIIPGIRIITE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEECC >Mature Secondary Structure AKQFHCVTVGNPNAGKSTLFNALTGANQQVGNWSGVTVEKKTGHFSLSGADVYLTDLPG CCCEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCEEEEECCCEEEECCCCEEEECCCC IYDILPAGKSCDCSLDEQIAQQYLAEQHMDGIINLIDATNIERHLYLTVQLRELGIPMVV HHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEHHHCCCCEEE VVNKIDIALKRGVHVDIQKMSQELGCPVIAVCAREAKDVLKVQEQVVALLEGKVSEAPLM EEEHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE LGYESAIERAVAELMEKDNGLSRGRALAMLGNGLGCGQCKNSEFESEVSRCADGLKAKGL ECHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCCCC DIELMVATTRFNFVERVYRAAVANDDAPTLSDRLDGLVLHPVLGVPVFLLVMYLMFMFAI CEEEEEEHHHHHHHHHHHHHHHCCCCCCCHHHHHCCEEEHHHHHHHHHHHHHHHHHHHHH NVGSAFIDFFDITAGALFVDHFGALLGNWGAPEWLVTLLAGGIGQGIQTVATFIPVIMAL HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH FLALSVLESSGYMSRAAFVVDGLMRRIGLPGKAFVPMIVGFGCSVPAIMATRTLGSERER HHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCHHHHHHHHCCCHHHH IVTGMMAPFMSCGARLPVYALFAAAFFPESGQNLVFLLYIIGIIAAIGTGLLLRSTLLPG HHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC VSSAVVMELPNYEMPKFKAVVSRTGKRTKSFILGAGKTIVLVVTLLNFINAVGVDGTFGH CCCCEEEECCCCCCHHHHHHHHHCCCHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCC EDSSESVLSVVSQKVTPIFSPMGIEEGNWPATVGIITGIFAKEAVVGTLNSLYSTPGADE CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC EGLTPLSESVSEALATIPANLLGIAPEDPMSMSVGDVSSVDTAAEEQGVDRSTFSALQSG CCCCHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHCC FSGQLAAFSYLVFVLLYTPCVAAMGALVNEFGKGWAVFAATWTFGLAYGTATLVYQWGNV CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEHHHHHHHHHHHHHHEEEECCCC AVHPLQTLLWTAVIAGALIAFFIYLKQKGRKTQQIIPGIRIITE HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCCCEEECC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Fe (II) [Periplasm] [C]
Specific reaction: Fe (II) [Periplasm] = Fe (II) [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA