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The map label for this gene is ydgJ [C]

Identifier: 119774331

GI number: 119774331

Start: 1463578

End: 1464945

Strand: Direct

Name: ydgJ [C]

Synonym: Sama_1194

Alternate gene names: 119774331

Gene position: 1463578-1464945 (Clockwise)

Preceding gene: 119774330

Following gene: 119774332

Centisome position: 33.99

GC content: 58.48

Gene sequence:

>1368_bases
ATGGCGGGAATCGATCGTCGTGGATTTTTGAAGGCCTCTATGGCATCTGTGGCTGCAGCGGCGCTGGCCGGTTGTGCCAG
TCAGCAGGGCACCAGCGCAACACCCAAGGCTGCGGGTAAATCCGTGATGGGCCTGGTGGTGCCAAAGATGGCCGAAGTGA
GAGTGGGCCTCATTGGTGTGGGTGAACGTGGTGTGGGCTTTATCCATCACTTCAATAACATCGAAGGCGCACGCATTACT
GCTATCTGCGATACCGATCCTCTGGTTATCTCCCGTGCCCAAAAAATCATGGCCGATTATGGTCGCAGTCAGCCGGCTTA
TTACAGTAAGGGGCAGCAAGCCTATCTTGATTTGGTTGCCCGCGAAGATGTGGACATAGTGGTCATCGCCACGCCCTGGG
CGCTGCATCACCCCATGGCCAAAGCCGCCATGCTGGCCGGTAAGCACGCCTTTGTGGAAGTTCCCATGGGCATGACCATC
GAAGAGCTCTGGGATCTGGTAGACACCGCCGAGCTGACCCAGCGCAACTGCATGATGATGGAAAACGTCTGCTACGGCCG
CGACGAGTTGATGGTACTGAATATGGTGCGTCAGGGCCTCTTTGGTGAGCTGCTCCACGGTGAGGCGGCGTACATCCATG
AACTTCGCTGGCAGATGAAAGAGCTCGACCGCAAAACCGGCTCCTGGCGTACCGGCTATCATGCCCAAATCAACGGTAAC
CTGTATCCCACCCACGGCCTGGGCCCGGTTGCCCAGTATATGAACATCAACCGCGGCGACCGCTTCGACTATCTCTCGTC
CATGAGTTCACCGGCCCTTGGCCGCGCAGCCTATGCACAGCGCGAGTTTCCAAAAGATCACCAGCGCAACCAGCTCAACT
ACATTTGCGGCGACATGAACACCAGCCTGATCAAAACCGTCAAGGGCCGGACCATCATGGTGCAGCACGATACCACCACG
CCACGTCCCTACAGCCGCCATAACCTGATTCAGGGCACCAATGGCGTCTTTGCCGGCTTCCCCAACCGTATCGCCCTGGA
AAACCATGGTCGCGGCAGTTTCCACGAGTGGGATCAGGACATGGAACACTGGTACGGTAAATACGACCACCCGCTGTGGA
CCCGCATGGGTCGTGAAGCCGAGCAGAACGGCGGCCATGGCGGCATGGACTTCCTGATGTGCTGGCGCATGATTTATTGC
CTGCGAAACGGCGAGCCATTGGATCAGGATGTGTACGATGGTGCGGCCTGGTCAGCGGTGCAGCCCCTGTCTGCCGCGTC
AGTGGCCGACCGTGGCAATTCCCGTGACTTCCCGGACTTTACCCGTGGCGTATGGCAGAGCGCCACGCCACTGGGCATCG
TGGAGTAA

Upstream 100 bases:

>100_bases
TGACACAGGCATTCCTGAGCGTTACGCCCAGGCACTCGAAAAACAAGGGGTGCAATTGCACCTGGTAGAACGCACTCAAT
AGCGATTTAAGGGGAGAACA

Downstream 100 bases:

>100_bases
GCAGATGTCGGTGCTCAAATCCATTATTGAGGCCAACAAGCGTGGCGAGCAGCGGGGCATTTTTGCCGTCTGCTCGGCAC
AGCCGCTGGTCCTGCGAGCC

Product: Gfo/Idh/MocA family oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 454

Protein sequence:

>455_residues
MAGIDRRGFLKASMASVAAAALAGCASQQGTSATPKAAGKSVMGLVVPKMAEVRVGLIGVGERGVGFIHHFNNIEGARIT
AICDTDPLVISRAQKIMADYGRSQPAYYSKGQQAYLDLVAREDVDIVVIATPWALHHPMAKAAMLAGKHAFVEVPMGMTI
EELWDLVDTAELTQRNCMMMENVCYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKELDRKTGSWRTGYHAQINGN
LYPTHGLGPVAQYMNINRGDRFDYLSSMSSPALGRAAYAQREFPKDHQRNQLNYICGDMNTSLIKTVKGRTIMVQHDTTT
PRPYSRHNLIQGTNGVFAGFPNRIALENHGRGSFHEWDQDMEHWYGKYDHPLWTRMGREAEQNGGHGGMDFLMCWRMIYC
LRNGEPLDQDVYDGAAWSAVQPLSAASVADRGNSRDFPDFTRGVWQSATPLGIVE

Sequences:

>Translated_455_residues
MAGIDRRGFLKASMASVAAAALAGCASQQGTSATPKAAGKSVMGLVVPKMAEVRVGLIGVGERGVGFIHHFNNIEGARIT
AICDTDPLVISRAQKIMADYGRSQPAYYSKGQQAYLDLVAREDVDIVVIATPWALHHPMAKAAMLAGKHAFVEVPMGMTI
EELWDLVDTAELTQRNCMMMENVCYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKELDRKTGSWRTGYHAQINGN
LYPTHGLGPVAQYMNINRGDRFDYLSSMSSPALGRAAYAQREFPKDHQRNQLNYICGDMNTSLIKTVKGRTIMVQHDTTT
PRPYSRHNLIQGTNGVFAGFPNRIALENHGRGSFHEWDQDMEHWYGKYDHPLWTRMGREAEQNGGHGGMDFLMCWRMIYC
LRNGEPLDQDVYDGAAWSAVQPLSAASVADRGNSRDFPDFTRGVWQSATPLGIVE
>Mature_454_residues
AGIDRRGFLKASMASVAAAALAGCASQQGTSATPKAAGKSVMGLVVPKMAEVRVGLIGVGERGVGFIHHFNNIEGARITA
ICDTDPLVISRAQKIMADYGRSQPAYYSKGQQAYLDLVAREDVDIVVIATPWALHHPMAKAAMLAGKHAFVEVPMGMTIE
ELWDLVDTAELTQRNCMMMENVCYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKELDRKTGSWRTGYHAQINGNL
YPTHGLGPVAQYMNINRGDRFDYLSSMSSPALGRAAYAQREFPKDHQRNQLNYICGDMNTSLIKTVKGRTIMVQHDTTTP
RPYSRHNLIQGTNGVFAGFPNRIALENHGRGSFHEWDQDMEHWYGKYDHPLWTRMGREAEQNGGHGGMDFLMCWRMIYCL
RNGEPLDQDVYDGAAWSAVQPLSAASVADRGNSRDFPDFTRGVWQSATPLGIVE

Specific function: Glycosidase

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family. Glycosyl hydrolase 109 subfamily

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): GH109_SHEAM (A1S4U5)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_927071.1
- ProteinModelPortal:   A1S4U5
- SMR:   A1S4U5
- STRING:   A1S4U5
- GeneID:   4603446
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_1194
- NMPDR:   fig|326297.7.peg.1126
- eggNOG:   COG0673
- HOGENOM:   HBG611861
- OMA:   ARITAIC
- ProtClustDB:   CLSK901939
- GO:   GO:0005488
- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR006311
- InterPro:   IPR019546
- Gene3D:   G3DSA:3.40.50.720
- TIGRFAMs:   TIGR01409

Pfam domain/function: PF01408 GFO_IDH_MocA; PF10518 TAT_signal

EC number: 1.-.-.- [C]

Molecular weight: Translated: 50618; Mature: 50487

Theoretical pI: Translated: 7.12; Mature: 7.12

Prosite motif: PS51318 TAT; PS00013 PROKAR_LIPOPROTEIN

Important sites: BINDING 84-84 BINDING 112-112 BINDING 182-182 BINDING 211-211 BINDING 230-230 BINDING 242-242 BINDING 324-324

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
5.3 %Met     (Translated Protein)
6.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAGIDRRGFLKASMASVAAAALAGCASQQGTSATPKAAGKSVMGLVVPKMAEVRVGLIGV
CCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHCCHHHEEEEEEEE
GERGVGFIHHFNNIEGARITAICDTDPLVISRAQKIMADYGRSQPAYYSKGQQAYLDLVA
CCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHH
REDVDIVVIATPWALHHPMAKAAMLAGKHAFVEVPMGMTIEELWDLVDTAELTQRNCMMM
CCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ENVCYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKELDRKTGSWRTGYHAQINGN
HHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
LYPTHGLGPVAQYMNINRGDRFDYLSSMSSPALGRAAYAQREFPKDHQRNQLNYICGDMN
CCCCCCCCHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCEEEECCCC
TSLIKTVKGRTIMVQHDTTTPRPYSRHNLIQGTNGVFAGFPNRIALENHGRGSFHEWDQD
HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCHHHHHHH
MEHWYGKYDHPLWTRMGREAEQNGGHGGMDFLMCWRMIYCLRNGEPLDQDVYDGAAWSAV
HHHHCCCCCCHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHH
QPLSAASVADRGNSRDFPDFTRGVWQSATPLGIVE
CCCHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
AGIDRRGFLKASMASVAAAALAGCASQQGTSATPKAAGKSVMGLVVPKMAEVRVGLIGV
CCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHCCHHHHHHHCCHHHEEEEEEEE
GERGVGFIHHFNNIEGARITAICDTDPLVISRAQKIMADYGRSQPAYYSKGQQAYLDLVA
CCCCCEEEEECCCCCCCEEEEEECCCCHHHHHHHHHHHHHCCCCCCHHCCCHHHHHHHHH
REDVDIVVIATPWALHHPMAKAAMLAGKHAFVEVPMGMTIEELWDLVDTAELTQRNCMMM
CCCCCEEEEECCHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
ENVCYGRDELMVLNMVRQGLFGELLHGEAAYIHELRWQMKELDRKTGSWRTGYHAQINGN
HHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC
LYPTHGLGPVAQYMNINRGDRFDYLSSMSSPALGRAAYAQREFPKDHQRNQLNYICGDMN
CCCCCCCCHHHHHHCCCCCCCHHHHHHCCCCCHHHHHHHHHCCCCHHHCCCCEEEECCCC
TSLIKTVKGRTIMVQHDTTTPRPYSRHNLIQGTNGVFAGFPNRIALENHGRGSFHEWDQD
HHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCEECCCCCEEEECCCCCCCHHHHHHH
MEHWYGKYDHPLWTRMGREAEQNGGHGGMDFLMCWRMIYCLRNGEPLDQDVYDGAAWSAV
HHHHCCCCCCHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHH
QPLSAASVADRGNSRDFPDFTRGVWQSATPLGIVE
CCCHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA