| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is menE [H]
Identifier: 119774321
GI number: 119774321
Start: 1447395
End: 1449089
Strand: Direct
Name: menE [H]
Synonym: Sama_1184
Alternate gene names: 119774321
Gene position: 1447395-1449089 (Clockwise)
Preceding gene: 119774320
Following gene: 119774322
Centisome position: 33.61
GC content: 55.34
Gene sequence:
>1695_bases ATGAATGCCAACCTGTGCCGTCATTTGGTTTCGGCCGCACAGGCTCAGCCCCAGGGCTTGGCGGTGGCGGTACAAAGGCA CAGATTCGGCAAGCCGCCGCGGGGAATTGGTGAGCTTTGCTATGATGAGCTGACCCTGAGTGAGCTGAATCGTCGCAGTG ATGCCATTGCCCATGGCCTCAATGCCATAGGTCTCAATGCCGGTGACAAAGCCGTGCTTATGGTGACACCCGGGCTGGAT TTTTTTGCTCTGACATTTGCGCTTTTTAAAGCCGGGATCATTCCCGTGATGGTCGACCCCGGCATGGGCATCAAAAACCT TGGCCAGTGTTTCGATGAAGCAGCGCCCGATGCCTTTATCGGTATTCCCAAAGCCCATGTGGCGAGGATGCTGTTTTCCT GGGGTAAAAAAACCGTCACTCAGTTGGTGACGGTTGGTCGGGGGCTCAAACTCTGGGGTGGCAATACTCTGGTGCAGATT GAAAAGCACGGTCAGGATATGGGGCCCTATCCCATGACCTTGCTCGATGAGCAGGCCCTTTGCGCCATCCTTTTCACCAG TGGCAGCACAGGCGTACCCAAGGGAGTTGAATACAGCCATCAGATGTTTGAGGCGCAAATTCAGGCGCTCAAACAGGATT ATGGCATCCGCCACGGTGAGCGGGACTTATCGACTTTTCCGCTGTTTGCCCTCTTTGGTCCGGCATTGGGAATGGCCTCC ATCGTGCCCTGTATGGATGCCAGTCGCCCCATCAAGGCCAAACCCGAATACCTGTTCAAGGCCATTGCCGACTACCAGTG CACCAACCTGTTTTTGAATCCGGCACTGCTGGATAAGCTTGGCCGATACGGCGAGGCGAATGCACTGACACTGAATGGCG TCAGGCGGGTTATCTCTGCCGGGGCTCCGGCATCCATTGACGCTATCAACCGCTTCCGGCAGATACTGCCGCCGGATGCG CCTGTGCTGAATTCTTACGGCGCCACTGAAGGCCTGCCCCTGTGTTTTGTTGGCAGTGATGAGCTGCTCGCGAGCGGTGA GGTGACAGCCAAAGGCGGTGGCATTCTGGTGGGTAAACCGGTGCAGGGCGTTGCGCTTGAAATCATCGCCATCGACGAGG CGCCAATTGCCGAGTGGCAGGACGAGCTTAAACTTCAACCCTATGAAATCGGTGAAATAGTGGTAAAAGGCCCCATGGTA AGCCGCGCTTACTATCACAGAGATGAAGCCACCAGTATCGCCAAAATTGCCGATGACGGAGAGTTCTGGCATCGCATGGG TGATCTTGGGTATCTCGATGAGCTGGGCCGCCTGTGGATGTGTGGCCGTAAGGCCCATCGGGTGGATGCCACCGAAGGCG GCGCCTTCAGTAAACGCTATTTTTCCATTCCCTGTGAGCGAATTTTCAATACTCATCCGCTGGTTGCCCGCTCGGCACTG GTTGGGGTGCATCGTCATGGGGATAAGATCCCCTTGGTATGCCTTGAGCTCGAACGTTCTCAGGCCTGCAACAATGCCAG CAGCCTGTACCGAGAGCTGCGTGAAATGGCCGAGGCCCACGAAATCACTCAGGGGATAGATTTCTTCCTTATCCATGAGT CCTTCCCCATGGATGTTCGCCACAACGCCAAGATTTTCAGGGAAAAACTCGCGCTTTGGGCCGAAAAACAACTCTCTGGT GGTCTGAATAAATGA
Upstream 100 bases:
>100_bases AAGACTGTGGTCACTACATCCTTGAGGATGCCAGCGACGAAGTGATAGCCCACATTGAGCGTTTTGTGGCGGCCTCTGCG CCTGCCGAGGCCCTTGCGTC
Downstream 100 bases:
>100_bases CGCAGGCGTATCCTTTGCATCCGGCGCAGCTGGAGGCCGCCAAACGCCTTAAGACCCACGTCAGCCGCGTACTGGTGACA GGCGCAGGGGGCTTTTTGGG
Product: peptide synthase
Products: NA
Alternate protein names: OSB-CoA synthetase; o-succinylbenzoyl-CoA synthetase [H]
Number of amino acids: Translated: 564; Mature: 564
Protein sequence:
>564_residues MNANLCRHLVSAAQAQPQGLAVAVQRHRFGKPPRGIGELCYDELTLSELNRRSDAIAHGLNAIGLNAGDKAVLMVTPGLD FFALTFALFKAGIIPVMVDPGMGIKNLGQCFDEAAPDAFIGIPKAHVARMLFSWGKKTVTQLVTVGRGLKLWGGNTLVQI EKHGQDMGPYPMTLLDEQALCAILFTSGSTGVPKGVEYSHQMFEAQIQALKQDYGIRHGERDLSTFPLFALFGPALGMAS IVPCMDASRPIKAKPEYLFKAIADYQCTNLFLNPALLDKLGRYGEANALTLNGVRRVISAGAPASIDAINRFRQILPPDA PVLNSYGATEGLPLCFVGSDELLASGEVTAKGGGILVGKPVQGVALEIIAIDEAPIAEWQDELKLQPYEIGEIVVKGPMV SRAYYHRDEATSIAKIADDGEFWHRMGDLGYLDELGRLWMCGRKAHRVDATEGGAFSKRYFSIPCERIFNTHPLVARSAL VGVHRHGDKIPLVCLELERSQACNNASSLYRELREMAEAHEITQGIDFFLIHESFPMDVRHNAKIFREKLALWAEKQLSG GLNK
Sequences:
>Translated_564_residues MNANLCRHLVSAAQAQPQGLAVAVQRHRFGKPPRGIGELCYDELTLSELNRRSDAIAHGLNAIGLNAGDKAVLMVTPGLD FFALTFALFKAGIIPVMVDPGMGIKNLGQCFDEAAPDAFIGIPKAHVARMLFSWGKKTVTQLVTVGRGLKLWGGNTLVQI EKHGQDMGPYPMTLLDEQALCAILFTSGSTGVPKGVEYSHQMFEAQIQALKQDYGIRHGERDLSTFPLFALFGPALGMAS IVPCMDASRPIKAKPEYLFKAIADYQCTNLFLNPALLDKLGRYGEANALTLNGVRRVISAGAPASIDAINRFRQILPPDA PVLNSYGATEGLPLCFVGSDELLASGEVTAKGGGILVGKPVQGVALEIIAIDEAPIAEWQDELKLQPYEIGEIVVKGPMV SRAYYHRDEATSIAKIADDGEFWHRMGDLGYLDELGRLWMCGRKAHRVDATEGGAFSKRYFSIPCERIFNTHPLVARSAL VGVHRHGDKIPLVCLELERSQACNNASSLYRELREMAEAHEITQGIDFFLIHESFPMDVRHNAKIFREKLALWAEKQLSG GLNK >Mature_564_residues MNANLCRHLVSAAQAQPQGLAVAVQRHRFGKPPRGIGELCYDELTLSELNRRSDAIAHGLNAIGLNAGDKAVLMVTPGLD FFALTFALFKAGIIPVMVDPGMGIKNLGQCFDEAAPDAFIGIPKAHVARMLFSWGKKTVTQLVTVGRGLKLWGGNTLVQI EKHGQDMGPYPMTLLDEQALCAILFTSGSTGVPKGVEYSHQMFEAQIQALKQDYGIRHGERDLSTFPLFALFGPALGMAS IVPCMDASRPIKAKPEYLFKAIADYQCTNLFLNPALLDKLGRYGEANALTLNGVRRVISAGAPASIDAINRFRQILPPDA PVLNSYGATEGLPLCFVGSDELLASGEVTAKGGGILVGKPVQGVALEIIAIDEAPIAEWQDELKLQPYEIGEIVVKGPMV SRAYYHRDEATSIAKIADDGEFWHRMGDLGYLDELGRLWMCGRKAHRVDATEGGAFSKRYFSIPCERIFNTHPLVARSAL VGVHRHGDKIPLVCLELERSQACNNASSLYRELREMAEAHEITQGIDFFLIHESFPMDVRHNAKIFREKLALWAEKQLSG GLNK
Specific function: Converts 2-succinylbenzoate (OSB) to 2-succinylbenzoyl- CoA (OSB-CoA) [H]
COG id: COG0318
COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II
Gene ontology:
Cell location: Partially Membrane-Associated [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family. MenE subfamily [H]
Homologues:
Organism=Escherichia coli, GI1788107, Length=470, Percent_Identity=23.8297872340426, Blast_Score=86, Evalue=7e-18, Organism=Escherichia coli, GI1789201, Length=286, Percent_Identity=27.6223776223776, Blast_Score=63, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17558820, Length=404, Percent_Identity=22.029702970297, Blast_Score=79, Evalue=5e-15, Organism=Caenorhabditis elegans, GI71985884, Length=286, Percent_Identity=25.1748251748252, Blast_Score=75, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17531443, Length=373, Percent_Identity=22.7882037533512, Blast_Score=74, Evalue=2e-13, Organism=Drosophila melanogaster, GI18859661, Length=329, Percent_Identity=23.1003039513678, Blast_Score=75, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 - InterPro: IPR010192 - InterPro: IPR023015 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: =6.2.1.26 [H]
Molecular weight: Translated: 61633; Mature: 61633
Theoretical pI: Translated: 6.94; Mature: 6.94
Prosite motif: PS00455 AMP_BINDING
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.0 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 2.0 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNANLCRHLVSAAQAQPQGLAVAVQRHRFGKPPRGIGELCYDELTLSELNRRSDAIAHGL CCHHHHHHHHHHHHCCCCCHHEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC NAIGLNAGDKAVLMVTPGLDFFALTFALFKAGIIPVMVDPGMGIKNLGQCFDEAAPDAFI CCEECCCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEE GIPKAHVARMLFSWGKKTVTQLVTVGRGLKLWGGNTLVQIEKHGQDMGPYPMTLLDEQAL CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCCCHHHCCCCCE CAILFTSGSTGVPKGVEYSHQMFEAQIQALKQDYGIRHGERDLSTFPLFALFGPALGMAS EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH IVPCMDASRPIKAKPEYLFKAIADYQCTNLFLNPALLDKLGRYGEANALTLNGVRRVISA HHHHCCCCCCCCCCHHHHHHHHHCCHHHHEEECHHHHHHHCCCCCCCEEEHHHHHHHHHC GAPASIDAINRFRQILPPDAPVLNSYGATEGLPLCFVGSDELLASGEVTAKGGGILVGKP CCCCCHHHHHHHHHHCCCCCCHHCCCCCCCCCCEEEECCCHHEECCCEEECCCCEEECCC VQGVALEIIAIDEAPIAEWQDELKLQPYEIGEIVVKGPMVSRAYYHRDEATSIAKIADDG CCCEEEEEEEECCCCHHHHHHHHCCCCEECCEEEEECCCHHHHHHCCCHHHHHHHHCCCH EFWHRMGDLGYLDELGRLWMCGRKAHRVDATEGGAFSKRYFSIPCERIFNTHPLVARSAL HHHHHHCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHCCCCHHHHCCCCCHHHHHHH VGVHRHGDKIPLVCLELERSQACNNASSLYRELREMAEAHEITQGIDFFLIHESFPMDVR HHHHHCCCCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC HNAKIFREKLALWAEKQLSGGLNK HHHHHHHHHHHHHHHHHHCCCCCC >Mature Secondary Structure MNANLCRHLVSAAQAQPQGLAVAVQRHRFGKPPRGIGELCYDELTLSELNRRSDAIAHGL CCHHHHHHHHHHHHCCCCCHHEEEHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCC NAIGLNAGDKAVLMVTPGLDFFALTFALFKAGIIPVMVDPGMGIKNLGQCFDEAAPDAFI CCEECCCCCCEEEEEECCCHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHHHCCCCEE GIPKAHVARMLFSWGKKTVTQLVTVGRGLKLWGGNTLVQIEKHGQDMGPYPMTLLDEQAL CCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCEEEEEECCCCCCCCCCHHHCCCCCE CAILFTSGSTGVPKGVEYSHQMFEAQIQALKQDYGIRHGERDLSTFPLFALFGPALGMAS EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHH IVPCMDASRPIKAKPEYLFKAIADYQCTNLFLNPALLDKLGRYGEANALTLNGVRRVISA HHHHCCCCCCCCCCHHHHHHHHHCCHHHHEEECHHHHHHHCCCCCCCEEEHHHHHHHHHC GAPASIDAINRFRQILPPDAPVLNSYGATEGLPLCFVGSDELLASGEVTAKGGGILVGKP CCCCCHHHHHHHHHHCCCCCCHHCCCCCCCCCCEEEECCCHHEECCCEEECCCCEEECCC VQGVALEIIAIDEAPIAEWQDELKLQPYEIGEIVVKGPMVSRAYYHRDEATSIAKIADDG CCCEEEEEEEECCCCHHHHHHHHCCCCEECCEEEEECCCHHHHHHCCCHHHHHHHHCCCH EFWHRMGDLGYLDELGRLWMCGRKAHRVDATEGGAFSKRYFSIPCERIFNTHPLVARSAL HHHHHHCCCHHHHHHHHHHHCCCHHCCCCCCCCCCCCCHHCCCCHHHHCCCCCHHHHHHH VGVHRHGDKIPLVCLELERSQACNNASSLYRELREMAEAHEITQGIDFFLIHESFPMDVR HHHHHCCCCCCEEEEEECHHHCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCC HNAKIFREKLALWAEKQLSGGLNK HHHHHHHHHHHHHHHHHHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA