| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774272
Identifier: 119774272
GI number: 119774272
Start: 1384145
End: 1384492
Strand: Reverse
Name: 119774272
Synonym: Sama_1135
Alternate gene names: NA
Gene position: 1384492-1384145 (Counterclockwise)
Preceding gene: 119774273
Following gene: 119774266
Centisome position: 32.15
GC content: 50.0
Gene sequence:
>348_bases ATGAAGATACAACACGCTTTTGCCGCACTGACTTTAGGATGCCTGAGTTTGGGTGCAACCGCCGCCATGAGCCCCGATGT GGAAAACAAACTGATTGCAGTATGTAAAACCGGATTGAGTGACAGCCAGGTGCAATTCCTTTCGACCATGAAAGAACACC GCATTAACGAAACCCGGGTGTTCCCTCGCTTGGTTTGCAACGGTGAAACCTTCTATGACTTCGCCGTATCCAACGGGTCA AACCGCACGGCCGAGCGCATTGCCCGCTACCTGCCAGGTAAAGTAACCATCAAAGATTTGGCCATGAATCACGCCGATGA AATGCTTTATGTAGAGTTCGACAAGTAG
Upstream 100 bases:
>100_bases GATAGTCACAAATTCATACAGAATGACATACTTTATGTGTCGATTTTGTGTAAGGAGAGAGCTGTAATCTAGGGGTGTCT GTACAACGAGGAGAGTACAA
Downstream 100 bases:
>100_bases CACAAAAAGGCGCCGAGGCGCCTTTTTGGTGGGTGCTGTGTTAAAACACCACGGTCTTGTTACCGTAAACCACGACCTTA TCGGCCAGTACCAAACCCAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 115; Mature: 115
Protein sequence:
>115_residues MKIQHAFAALTLGCLSLGATAAMSPDVENKLIAVCKTGLSDSQVQFLSTMKEHRINETRVFPRLVCNGETFYDFAVSNGS NRTAERIARYLPGKVTIKDLAMNHADEMLYVEFDK
Sequences:
>Translated_115_residues MKIQHAFAALTLGCLSLGATAAMSPDVENKLIAVCKTGLSDSQVQFLSTMKEHRINETRVFPRLVCNGETFYDFAVSNGS NRTAERIARYLPGKVTIKDLAMNHADEMLYVEFDK >Mature_115_residues MKIQHAFAALTLGCLSLGATAAMSPDVENKLIAVCKTGLSDSQVQFLSTMKEHRINETRVFPRLVCNGETFYDFAVSNGS NRTAERIARYLPGKVTIKDLAMNHADEMLYVEFDK
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 12774; Mature: 12774
Theoretical pI: Translated: 7.44; Mature: 7.44
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.6 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 7.0 %Cys+Met (Translated Protein) 2.6 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 7.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKIQHAFAALTLGCLSLGATAAMSPDVENKLIAVCKTGLSDSQVQFLSTMKEHRINETRV CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH FPRLVCNGETFYDFAVSNGSNRTAERIARYLPGKVTIKDLAMNHADEMLYVEFDK HHHEEECCCEEEEEEECCCCCHHHHHHHHHCCCCEEHHHHHHCCCCCEEEEEECC >Mature Secondary Structure MKIQHAFAALTLGCLSLGATAAMSPDVENKLIAVCKTGLSDSQVQFLSTMKEHRINETRV CCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCHHH FPRLVCNGETFYDFAVSNGSNRTAERIARYLPGKVTIKDLAMNHADEMLYVEFDK HHHEEECCCEEEEEEECCCCCHHHHHHHHHCCCCEEHHHHHHCCCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA