Definition Shewanella amazonensis SB2B chromosome, complete genome.
Accession NC_008700
Length 4,306,142

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The map label for this gene is 119774266

Identifier: 119774266

GI number: 119774266

Start: 1378582

End: 1379595

Strand: Reverse

Name: 119774266

Synonym: Sama_1129

Alternate gene names: NA

Gene position: 1379595-1378582 (Counterclockwise)

Preceding gene: 119774272

Following gene: 119774265

Centisome position: 32.04

GC content: 53.75

Gene sequence:

>1014_bases
ATGGCAGAAATCACCAGCATCAGTCAATTTCTTTCCACCGCCAAGACCCAGTTTCAGGTGTACGATCTGGGGCGCCGTGT
GCAACATATCGATGCCATGGCATTTGCCCAAATTGAAGCATTGCAGGCCCCTTATCCCTATCCCATCCAGGGACACGCCA
AAATGGCACTGGTATTTTGGGATGCCAGCGAACAACACTTCGTGTGGTTTATCAGTCTGCCATTGGATGAGCGGGGTCTG
CTGAGCCCCGCACCACGCAGTCACTTCATTCAAATGATTTTGGAGGCTCTGGGCCAGGATTTGACCCGGACGCTGAGCGA
AGATGAACAGCAGAAAATGGCCAATCATCCGTTCAGCTTTAAACCCACACAGGAGAAACTGGCGGTATTTAATGCCCTGG
TGCGCCGTCATCTCGGACGTTCGGCTTCCAGTCAGTATGAATTTGCTGCTCAGTATTTATCGGGCCAGCTACCGGCAGAG
TCCTGGCCGAATGTGGGGTTTCAGGGGCTGGCTGACATCTGTGTCAGACTCGGTGAGCTGGACCATGCAGCCATGGTGGC
CCGTGCCCTTAAAAATGCACCAATGGAAGTTCAAATAGCACTGTGTCAGTGCCTTGAGCATGTGCTGGTATCGGATGAAG
TAAAAGACGCACTCTTGGCGGGGCTGGAAGAACACAGGGATGCACGCCTCATCTACTTTTTAAGGGCCTTGGGCAGCCAG
TCTGATGCCTCTGTGCGAGCCATCGCGTCTCTGGCAGAGAAACGACTGCTCACCGAAGAGGTGTTGATCTGCATCGCCGG
TCGGAACTGGTTGGCGCTGCGGGATGATGTGTGTCGCAAAAACTTCCTGGAAGCACTGGCGTTGATGCCGCAAGACTTTT
TCAATCAAGTCTTTGCTGATATTGTGGCTATCCCGGCACTGCGCACGTCCATGTTGATGGCTATCCGGGATCCGAATCGC
AGCGATGCCCTGTCTCTGGCCATCGGCGGACTGTTCAAGGCGACCAAATCATGA

Upstream 100 bases:

>100_bases
CGGAAAGACTCTGCTGAAAAAGGGCAATTGTACCATCTTGCGCCACTTAACCCTATAATGGCGCCCCATCGGAACACTCT
CTTTTACAGGCCGCTTTCAG

Downstream 100 bases:

>100_bases
TGACCGACTTGCTTTTACTCCTTGGCGTTGCTCTGATTGCAGCGTTTTTCTGGCAATTGAGACAAATGGCGGAAATTGCC
CGCATGTTCGCCGAAAAAGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 337; Mature: 336

Protein sequence:

>337_residues
MAEITSISQFLSTAKTQFQVYDLGRRVQHIDAMAFAQIEALQAPYPYPIQGHAKMALVFWDASEQHFVWFISLPLDERGL
LSPAPRSHFIQMILEALGQDLTRTLSEDEQQKMANHPFSFKPTQEKLAVFNALVRRHLGRSASSQYEFAAQYLSGQLPAE
SWPNVGFQGLADICVRLGELDHAAMVARALKNAPMEVQIALCQCLEHVLVSDEVKDALLAGLEEHRDARLIYFLRALGSQ
SDASVRAIASLAEKRLLTEEVLICIAGRNWLALRDDVCRKNFLEALALMPQDFFNQVFADIVAIPALRTSMLMAIRDPNR
SDALSLAIGGLFKATKS

Sequences:

>Translated_337_residues
MAEITSISQFLSTAKTQFQVYDLGRRVQHIDAMAFAQIEALQAPYPYPIQGHAKMALVFWDASEQHFVWFISLPLDERGL
LSPAPRSHFIQMILEALGQDLTRTLSEDEQQKMANHPFSFKPTQEKLAVFNALVRRHLGRSASSQYEFAAQYLSGQLPAE
SWPNVGFQGLADICVRLGELDHAAMVARALKNAPMEVQIALCQCLEHVLVSDEVKDALLAGLEEHRDARLIYFLRALGSQ
SDASVRAIASLAEKRLLTEEVLICIAGRNWLALRDDVCRKNFLEALALMPQDFFNQVFADIVAIPALRTSMLMAIRDPNR
SDALSLAIGGLFKATKS
>Mature_336_residues
AEITSISQFLSTAKTQFQVYDLGRRVQHIDAMAFAQIEALQAPYPYPIQGHAKMALVFWDASEQHFVWFISLPLDERGLL
SPAPRSHFIQMILEALGQDLTRTLSEDEQQKMANHPFSFKPTQEKLAVFNALVRRHLGRSASSQYEFAAQYLSGQLPAES
WPNVGFQGLADICVRLGELDHAAMVARALKNAPMEVQIALCQCLEHVLVSDEVKDALLAGLEEHRDARLIYFLRALGSQS
DASVRAIASLAEKRLLTEEVLICIAGRNWLALRDDVCRKNFLEALALMPQDFFNQVFADIVAIPALRTSMLMAIRDPNRS
DALSLAIGGLFKATKS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 37599; Mature: 37468

Theoretical pI: Translated: 6.24; Mature: 6.24

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAEITSISQFLSTAKTQFQVYDLGRRVQHIDAMAFAQIEALQAPYPYPIQGHAKMALVFW
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE
DASEQHFVWFISLPLDERGLLSPAPRSHFIQMILEALGQDLTRTLSEDEQQKMANHPFSF
ECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KPTQEKLAVFNALVRRHLGRSASSQYEFAAQYLSGQLPAESWPNVGFQGLADICVRLGEL
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC
DHAAMVARALKNAPMEVQIALCQCLEHVLVSDEVKDALLAGLEEHRDARLIYFLRALGSQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
SDASVRAIASLAEKRLLTEEVLICIAGRNWLALRDDVCRKNFLEALALMPQDFFNQVFAD
CCHHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHH
IVAIPALRTSMLMAIRDPNRSDALSLAIGGLFKATKS
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEITSISQFLSTAKTQFQVYDLGRRVQHIDAMAFAQIEALQAPYPYPIQGHAKMALVFW
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE
DASEQHFVWFISLPLDERGLLSPAPRSHFIQMILEALGQDLTRTLSEDEQQKMANHPFSF
ECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
KPTQEKLAVFNALVRRHLGRSASSQYEFAAQYLSGQLPAESWPNVGFQGLADICVRLGEL
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC
DHAAMVARALKNAPMEVQIALCQCLEHVLVSDEVKDALLAGLEEHRDARLIYFLRALGSQ
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC
SDASVRAIASLAEKRLLTEEVLICIAGRNWLALRDDVCRKNFLEALALMPQDFFNQVFAD
CCHHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHH
IVAIPALRTSMLMAIRDPNRSDALSLAIGGLFKATKS
HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA