| Definition | Shewanella amazonensis SB2B chromosome, complete genome. |
|---|---|
| Accession | NC_008700 |
| Length | 4,306,142 |
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The map label for this gene is 119774266
Identifier: 119774266
GI number: 119774266
Start: 1378582
End: 1379595
Strand: Reverse
Name: 119774266
Synonym: Sama_1129
Alternate gene names: NA
Gene position: 1379595-1378582 (Counterclockwise)
Preceding gene: 119774272
Following gene: 119774265
Centisome position: 32.04
GC content: 53.75
Gene sequence:
>1014_bases ATGGCAGAAATCACCAGCATCAGTCAATTTCTTTCCACCGCCAAGACCCAGTTTCAGGTGTACGATCTGGGGCGCCGTGT GCAACATATCGATGCCATGGCATTTGCCCAAATTGAAGCATTGCAGGCCCCTTATCCCTATCCCATCCAGGGACACGCCA AAATGGCACTGGTATTTTGGGATGCCAGCGAACAACACTTCGTGTGGTTTATCAGTCTGCCATTGGATGAGCGGGGTCTG CTGAGCCCCGCACCACGCAGTCACTTCATTCAAATGATTTTGGAGGCTCTGGGCCAGGATTTGACCCGGACGCTGAGCGA AGATGAACAGCAGAAAATGGCCAATCATCCGTTCAGCTTTAAACCCACACAGGAGAAACTGGCGGTATTTAATGCCCTGG TGCGCCGTCATCTCGGACGTTCGGCTTCCAGTCAGTATGAATTTGCTGCTCAGTATTTATCGGGCCAGCTACCGGCAGAG TCCTGGCCGAATGTGGGGTTTCAGGGGCTGGCTGACATCTGTGTCAGACTCGGTGAGCTGGACCATGCAGCCATGGTGGC CCGTGCCCTTAAAAATGCACCAATGGAAGTTCAAATAGCACTGTGTCAGTGCCTTGAGCATGTGCTGGTATCGGATGAAG TAAAAGACGCACTCTTGGCGGGGCTGGAAGAACACAGGGATGCACGCCTCATCTACTTTTTAAGGGCCTTGGGCAGCCAG TCTGATGCCTCTGTGCGAGCCATCGCGTCTCTGGCAGAGAAACGACTGCTCACCGAAGAGGTGTTGATCTGCATCGCCGG TCGGAACTGGTTGGCGCTGCGGGATGATGTGTGTCGCAAAAACTTCCTGGAAGCACTGGCGTTGATGCCGCAAGACTTTT TCAATCAAGTCTTTGCTGATATTGTGGCTATCCCGGCACTGCGCACGTCCATGTTGATGGCTATCCGGGATCCGAATCGC AGCGATGCCCTGTCTCTGGCCATCGGCGGACTGTTCAAGGCGACCAAATCATGA
Upstream 100 bases:
>100_bases CGGAAAGACTCTGCTGAAAAAGGGCAATTGTACCATCTTGCGCCACTTAACCCTATAATGGCGCCCCATCGGAACACTCT CTTTTACAGGCCGCTTTCAG
Downstream 100 bases:
>100_bases TGACCGACTTGCTTTTACTCCTTGGCGTTGCTCTGATTGCAGCGTTTTTCTGGCAATTGAGACAAATGGCGGAAATTGCC CGCATGTTCGCCGAAAAAGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 337; Mature: 336
Protein sequence:
>337_residues MAEITSISQFLSTAKTQFQVYDLGRRVQHIDAMAFAQIEALQAPYPYPIQGHAKMALVFWDASEQHFVWFISLPLDERGL LSPAPRSHFIQMILEALGQDLTRTLSEDEQQKMANHPFSFKPTQEKLAVFNALVRRHLGRSASSQYEFAAQYLSGQLPAE SWPNVGFQGLADICVRLGELDHAAMVARALKNAPMEVQIALCQCLEHVLVSDEVKDALLAGLEEHRDARLIYFLRALGSQ SDASVRAIASLAEKRLLTEEVLICIAGRNWLALRDDVCRKNFLEALALMPQDFFNQVFADIVAIPALRTSMLMAIRDPNR SDALSLAIGGLFKATKS
Sequences:
>Translated_337_residues MAEITSISQFLSTAKTQFQVYDLGRRVQHIDAMAFAQIEALQAPYPYPIQGHAKMALVFWDASEQHFVWFISLPLDERGL LSPAPRSHFIQMILEALGQDLTRTLSEDEQQKMANHPFSFKPTQEKLAVFNALVRRHLGRSASSQYEFAAQYLSGQLPAE SWPNVGFQGLADICVRLGELDHAAMVARALKNAPMEVQIALCQCLEHVLVSDEVKDALLAGLEEHRDARLIYFLRALGSQ SDASVRAIASLAEKRLLTEEVLICIAGRNWLALRDDVCRKNFLEALALMPQDFFNQVFADIVAIPALRTSMLMAIRDPNR SDALSLAIGGLFKATKS >Mature_336_residues AEITSISQFLSTAKTQFQVYDLGRRVQHIDAMAFAQIEALQAPYPYPIQGHAKMALVFWDASEQHFVWFISLPLDERGLL SPAPRSHFIQMILEALGQDLTRTLSEDEQQKMANHPFSFKPTQEKLAVFNALVRRHLGRSASSQYEFAAQYLSGQLPAES WPNVGFQGLADICVRLGELDHAAMVARALKNAPMEVQIALCQCLEHVLVSDEVKDALLAGLEEHRDARLIYFLRALGSQS DASVRAIASLAEKRLLTEEVLICIAGRNWLALRDDVCRKNFLEALALMPQDFFNQVFADIVAIPALRTSMLMAIRDPNRS DALSLAIGGLFKATKS
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37599; Mature: 37468
Theoretical pI: Translated: 6.24; Mature: 6.24
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 4.5 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAEITSISQFLSTAKTQFQVYDLGRRVQHIDAMAFAQIEALQAPYPYPIQGHAKMALVFW CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE DASEQHFVWFISLPLDERGLLSPAPRSHFIQMILEALGQDLTRTLSEDEQQKMANHPFSF ECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC KPTQEKLAVFNALVRRHLGRSASSQYEFAAQYLSGQLPAESWPNVGFQGLADICVRLGEL CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC DHAAMVARALKNAPMEVQIALCQCLEHVLVSDEVKDALLAGLEEHRDARLIYFLRALGSQ HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC SDASVRAIASLAEKRLLTEEVLICIAGRNWLALRDDVCRKNFLEALALMPQDFFNQVFAD CCHHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHH IVAIPALRTSMLMAIRDPNRSDALSLAIGGLFKATKS HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC >Mature Secondary Structure AEITSISQFLSTAKTQFQVYDLGRRVQHIDAMAFAQIEALQAPYPYPIQGHAKMALVFW CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEE DASEQHFVWFISLPLDERGLLSPAPRSHFIQMILEALGQDLTRTLSEDEQQKMANHPFSF ECCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC KPTQEKLAVFNALVRRHLGRSASSQYEFAAQYLSGQLPAESWPNVGFQGLADICVRLGEL CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHCCC DHAAMVARALKNAPMEVQIALCQCLEHVLVSDEVKDALLAGLEEHRDARLIYFLRALGSQ HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCC SDASVRAIASLAEKRLLTEEVLICIAGRNWLALRDDVCRKNFLEALALMPQDFFNQVFAD CCHHHHHHHHHHHHHHHHHHHHHEECCCCEEEHHHHHHHHHHHHHHHHCCHHHHHHHHHH IVAIPALRTSMLMAIRDPNRSDALSLAIGGLFKATKS HHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA