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The map label for this gene is syd

Identifier: 119774258

GI number: 119774258

Start: 1372614

End: 1373261

Strand: Direct

Name: syd

Synonym: Sama_1121

Alternate gene names: 119774258

Gene position: 1372614-1373261 (Clockwise)

Preceding gene: 119774256

Following gene: 119774261

Centisome position: 31.88

GC content: 52.93

Gene sequence:

>648_bases
GTGTCTTGTCTGGCTGCACTGACAAAATTTCACGAAATCTATAAGGCCGCCTTCGTGGAGCGATTGGGCGAATTGCCCCG
TTGTTTTACCCACGGCAGGCCTTCTCCTTGCCTGGCTGATGACGCACTTGCTGGCAGCGAAGAGCCCCAGCCATGGCAGA
TGGTCCCAAGGCGGGAAGTCGCGGTATTCAACAATGTATCCCACGCGATGGATATCGAGTTACACCATGATATCGACGAT
TTTTATGGGCATCTATTTGGCGGTCCGTTGCAATTTGATTCACCTTGGGGAGAAGGTGAATTGATACAAATTTGGAACGA
AGACGATTTTGTGTTGCTGCAGCAAAACATCCTCGGGCATCTGATGATGAAAAAGCAGCTCAAGCAGCCCCAGACCTGGT
TTGTCGGCTTGATTGGCGACGTGGATGAGATGGTCTCGGTAAACAATGCCGATGGCACTGTCTGGCGTGAAGTTGCCGGT
CAGGAGCCCCATGAGCAACTGGCTGAGAGTCTGGAAGCGTTTTTGCAGCAGTTGAAACCGAGGGTTGCGCCGCCTCAGTA
TCATCAGGAGCCTGCCGCTACGGTAAATCCGCATCCGGGCATTTTCGCCAGTTTAAAGCGCATGTGGCAAAACCTGACGG
GCCGCTGA

Upstream 100 bases:

>100_bases
AGCTCGGCGGCACCACTATAGGGATCGTGATTTCGTGTCATCAAACATCTTTCCGTGTCAAAATAGGGGCACATTATAAC
CTAGTTTGGACGGTTCTTAA

Downstream 100 bases:

>100_bases
AAATCAAATCTGAAGAATCAAAAGGGCGCCTTATGGCGCCTTTTTAGTTGGCCATGTTTTGTTTGCCATGGTGGGCCGAT
TTACCTGGTATCTATCCGGT

Product: SecY interacting protein Syd

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 214

Protein sequence:

>215_residues
MSCLAALTKFHEIYKAAFVERLGELPRCFTHGRPSPCLADDALAGSEEPQPWQMVPRREVAVFNNVSHAMDIELHHDIDD
FYGHLFGGPLQFDSPWGEGELIQIWNEDDFVLLQQNILGHLMMKKQLKQPQTWFVGLIGDVDEMVSVNNADGTVWREVAG
QEPHEQLAESLEAFLQQLKPRVAPPQYHQEPAATVNPHPGIFASLKRMWQNLTGR

Sequences:

>Translated_215_residues
MSCLAALTKFHEIYKAAFVERLGELPRCFTHGRPSPCLADDALAGSEEPQPWQMVPRREVAVFNNVSHAMDIELHHDIDD
FYGHLFGGPLQFDSPWGEGELIQIWNEDDFVLLQQNILGHLMMKKQLKQPQTWFVGLIGDVDEMVSVNNADGTVWREVAG
QEPHEQLAESLEAFLQQLKPRVAPPQYHQEPAATVNPHPGIFASLKRMWQNLTGR
>Mature_214_residues
SCLAALTKFHEIYKAAFVERLGELPRCFTHGRPSPCLADDALAGSEEPQPWQMVPRREVAVFNNVSHAMDIELHHDIDDF
YGHLFGGPLQFDSPWGEGELIQIWNEDDFVLLQQNILGHLMMKKQLKQPQTWFVGLIGDVDEMVSVNNADGTVWREVAGQ
EPHEQLAESLEAFLQQLKPRVAPPQYHQEPAATVNPHPGIFASLKRMWQNLTGR

Specific function: Interacts with the secY protein in vivo. May bind preferentially to an uncomplexed state of secY, thus functioning either as a chelating agent for excess secY in the cell or as a regulatory factor that negatively controls the translocase function

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein; Cytoplasmic side. Note=Loosely associated with the Cytoplasmic side of the inner membrane, probably via secY (By similarity)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Syd family

Homologues:

Organism=Escherichia coli, GI1789157, Length=150, Percent_Identity=36, Blast_Score=95, Evalue=3e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SYDP_SHEAM (A1S4M2)

Other databases:

- EMBL:   CP000507
- RefSeq:   YP_926998.1
- STRING:   A1S4M2
- GeneID:   4603373
- GenomeReviews:   CP000507_GR
- KEGG:   saz:Sama_1121
- NMPDR:   fig|326297.7.peg.1055
- eggNOG:   NOG05748
- HOGENOM:   HBG298615
- OMA:   FIATTRN
- PhylomeDB:   A1S4M2
- ProtClustDB:   PRK04968
- HAMAP:   MF_01104
- InterPro:   IPR009948

Pfam domain/function: PF07348 Syd

EC number: NA

Molecular weight: Translated: 24389; Mature: 24258

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSCLAALTKFHEIYKAAFVERLGELPRCFTHGRPSPCLADDALAGSEEPQPWQMVPRREV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCHHHCCCHHH
AVFNNVSHAMDIELHHDIDDFYGHLFGGPLQFDSPWGEGELIQIWNEDDFVLLQQNILGH
HHHHCCCHHEEEEHHCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEHHHHHHH
LMMKKQLKQPQTWFVGLIGDVDEMVSVNNADGTVWREVAGQEPHEQLAESLEAFLQQLKP
HHHHHHHCCCCCEEHHHHHCHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCC
RVAPPQYHQEPAATVNPHPGIFASLKRMWQNLTGR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SCLAALTKFHEIYKAAFVERLGELPRCFTHGRPSPCLADDALAGSEEPQPWQMVPRREV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCCCCCCCHHHCCCHHH
AVFNNVSHAMDIELHHDIDDFYGHLFGGPLQFDSPWGEGELIQIWNEDDFVLLQQNILGH
HHHHCCCHHEEEEHHCCHHHHHHHHCCCCCCCCCCCCCCCEEEEECCCCEEEEHHHHHHH
LMMKKQLKQPQTWFVGLIGDVDEMVSVNNADGTVWREVAGQEPHEQLAESLEAFLQQLKP
HHHHHHHCCCCCEEHHHHHCHHHHHHCCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHCC
RVAPPQYHQEPAATVNPHPGIFASLKRMWQNLTGR
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA